genome.fa.s18.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  16  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6785161--6785346	87	2.1	88	92	1	311	29	15	23	31	1.95
6785212--6785295	36	2.3	37	91	2	134	26	15	26	32	1.96
6785249--6785347	51	2.0	50	95	2	180	30	15	25	29	1.95
6790002--6790039	15	2.5	15	84	12	51	42	0	44	13	1.43
6790032--6790082	3	17.0	3	80	8	59	60	0	37	1	1.08
6790018--6790081	18	3.4	18	80	16	67	54	0	40	4	1.21
6794428--6794476	21	2.3	21	78	0	62	2	30	10	57	1.43
6798263--6798368	52	2.0	52	100	0	212	40	5	16	36	1.73
6809291--6809355	29	2.2	29	83	8	78	55	3	6	35	1.40
6818379--6818505	63	2.0	63	85	0	173	29	22	16	31	1.96
6821125--6821173	25	1.9	25	87	4	71	30	6	0	63	1.19
6823379--6823637	73	3.5	73	99	0	509	40	25	6	27	1.79
6827865--6828050	73	2.5	73	95	0	345	40	24	6	27	1.80
6829046--6829075	16	1.9	16	93	6	53	43	33	10	13	1.77
6832065--6832321	140	1.8	140	84	5	349	43	22	9	24	1.82
6842340--6842394	17	3.4	17	70	14	62	23	29	20	27	1.99
6842337--6842405	31	2.2	31	97	0	129	27	27	18	26	1.98
6856561--6856595	14	2.4	14	90	4	52	71	2	2	22	1.13
6865942--6866010	32	2.2	33	86	5	97	43	0	2	53	1.15
6865953--6866036	32	2.6	32	79	7	80	45	2	2	50	1.27
6874427--6874490	31	2.1	31	100	0	128	31	18	25	25	1.98
6874780--6874831	24	2.2	24	89	0	77	55	9	1	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6885630--6885680	19	2.8	19	82	11	54	39	0	0	60	0.97
6887121--6887158	15	2.6	15	83	4	51	63	2	0	34	1.09
6887209--6887256	18	2.7	17	77	3	51	31	2	0	66	1.03
6887209--6887258	12	4.0	13	77	15	52	32	2	0	66	1.03
6891969--6892008	21	1.9	21	89	0	62	0	25	12	62	1.30
6895351--6895378	6	4.7	6	100	0	56	17	0	0	82	0.68
6908165--6908198	18	1.9	18	88	5	52	14	14	2	67	1.34
6911140--6911211	29	2.4	31	88	4	103	22	11	16	50	1.77
6918139--6918193	20	2.6	21	75	16	60	40	3	1	54	1.28
6918139--6918194	21	2.7	20	80	5	67	41	3	1	53	1.29
6918772--6918819	11	4.5	12	73	26	54	39	0	0	60	0.97
6918782--6918820	19	2.1	19	100	0	78	35	0	0	64	0.94
6918786--6918827	19	2.2	19	91	0	66	33	0	4	61	1.17
6920186--6920345	76	2.1	74	97	2	302	50	1	6	41	1.37
6935071--6935095	2	12.5	2	100	0	50	0	48	0	52	1.00
6958780--6958810	15	2.1	15	93	0	53	22	25	32	19	1.97
6959974--6960046	33	2.2	33	83	11	89	56	12	12	19	1.67
6962024--6962091	29	2.3	31	79	5	77	47	4	1	47	1.31
6977414--6977444	16	1.9	16	93	0	53	16	3	12	67	1.35
6977799--6977833	13	2.7	13	100	0	70	28	0	20	51	1.47
6978429--6978472	22	2.0	21	86	4	61	40	4	11	43	1.61
6978456--6978526	22	3.2	22	63	21	58	38	7	12	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6978451--6978544	44	2.1	44	100	0	188	42	6	13	37	1.70
6981318--6981698	17	22.6	17	66	24	106	23	13	0	62	1.35
6981353--6981720	5	69.2	5	66	23	73	23	13	0	61	1.36
6981336--6981399	28	2.3	28	79	12	78	29	12	0	57	1.35
6981387--6981448	18	3.8	18	70	29	66	22	6	0	70	1.09
6981319--6981441	29	4.1	28	75	20	90	25	10	0	64	1.25
6981396--6981478	29	2.8	29	87	7	105	19	9	1	69	1.22
6981465--6981613	28	5.4	27	74	12	101	24	16	0	59	1.42
6981566--6981713	21	6.7	21	69	20	81	22	13	0	64	1.28
6981555--6981718	67	2.4	71	75	16	173	22	14	0	63	1.30
6981573--6981678	32	3.2	32	75	15	110	18	13	0	67	1.22
6981671--6981723	17	3.1	17	83	8	63	30	13	0	56	1.37
6981695--6981795	31	3.0	34	76	16	102	28	11	0	58	1.40
6981766--6981820	25	2.2	25	90	6	85	38	7	1	52	1.40
6983242--6983274	12	2.6	13	85	9	50	21	3	0	75	0.93
6983620--6983652	17	2.0	17	88	5	50	30	15	0	54	1.41
6983718--6983825	28	4.0	28	70	17	77	37	11	0	51	1.37
6983683--6983812	24	5.2	23	68	25	59	33	10	0	55	1.35
6984944--6985017	25	3.0	25	76	7	96	51	2	12	33	1.53
6987085--6987177	39	2.5	37	80	7	98	27	29	22	20	1.98
6987532--6987579	3	16.0	3	82	0	60	58	6	0	35	1.23
6987533--6987581	18	2.7	18	93	0	80	55	8	0	36	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6987532--6987579	12	4.0	12	91	0	69	58	6	0	35	1.23
6988285--6988324	20	2.0	20	85	9	55	2	15	5	77	1.04
6988455--6988522	31	2.3	28	78	9	73	41	2	1	54	1.24
6988501--6988539	21	1.9	20	84	5	51	46	2	0	51	1.14
6993439--6993481	21	2.0	21	82	8	52	23	20	4	51	1.66
6994527--6994619	39	2.5	37	80	7	98	27	29	22	20	1.98
6994974--6995021	3	16.0	3	82	0	60	58	6	0	35	1.23
6994975--6995023	18	2.7	18	93	0	80	55	8	0	36	1.30
6994974--6995021	12	4.0	12	91	0	69	58	6	0	35	1.23
6995729--6995767	19	2.0	20	85	5	53	2	15	5	76	1.06
6995898--6995965	31	2.3	28	78	9	73	41	2	1	54	1.24
6995944--6995982	21	1.9	20	84	5	51	46	2	0	51	1.14
6998546--6998587	20	2.0	21	81	9	50	33	2	2	61	1.21
7001700--7001733	12	2.8	12	95	0	59	38	0	0	61	0.96
7009127--7009369	50	4.8	50	92	0	396	20	30	23	26	1.98
7009464--7009494	13	2.4	13	94	0	53	54	12	0	32	1.38
7009707--7009764	30	1.9	30	85	0	80	31	22	3	43	1.70
7011206--7011259	25	2.2	25	100	0	108	38	14	7	38	1.75
7016434--7016474	21	2.0	21	85	9	57	17	12	4	65	1.42
7017235--7017284	22	2.2	23	85	3	66	50	2	4	44	1.32
7017260--7017299	16	2.5	16	91	0	62	47	2	7	42	1.45
7017353--7017505	35	4.5	35	66	14	120	38	4	10	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7017282--7017513	102	2.3	102	91	2	367	39	6	8	45	1.60
7017520--7017551	6	5.3	6	92	0	55	18	0	43	37	1.51
7017520--7017571	18	2.9	18	85	0	59	17	1	36	44	1.60
7017575--7017607	15	2.2	15	100	0	66	24	0	27	48	1.51
7017587--7017742	33	4.7	33	71	13	131	23	0	34	41	1.59
7017585--7017761	67	2.6	67	78	12	184	23	0	33	42	1.59
7017678--7017707	14	2.1	14	100	0	60	26	0	26	46	1.53
7017714--7017764	21	2.4	22	90	9	88	27	0	33	39	1.57
7017708--7017857	33	5.3	27	73	24	125	22	0	35	41	1.59
7017692--7017856	60	2.9	56	88	7	244	23	0	33	42	1.59
7017737--7017874	33	4.4	32	83	13	180	20	1	34	44	1.61
7024773--7024828	29	1.9	29	85	0	76	35	14	8	41	1.77
7032660--7032689	16	1.9	15	93	6	51	60	0	0	40	0.97
7032652--7032715	27	2.3	29	86	5	87	57	0	1	40	1.08
7032656--7032715	29	2.1	27	84	6	75	58	0	1	40	1.08
7033870--7033953	21	3.9	22	83	7	102	16	22	23	36	1.94
7049186--7049210	12	2.1	12	100	0	50	52	40	0	8	1.31
7056955--7057098	74	1.9	78	84	5	197	42	6	2	48	1.42
7057248--7057278	15	2.1	15	100	0	62	54	0	0	45	0.99
7057244--7057312	15	4.8	14	72	16	61	52	0	0	47	1.00
7058536--7058628	48	2.0	45	87	10	134	26	12	18	41	1.86
7058785--7058824	21	1.9	21	89	0	62	55	0	2	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7061218--7061611	87	4.6	87	77	11	386	26	25	16	30	1.96
7061367--7061505	75	1.9	75	84	0	188	27	22	17	32	1.97
7062361--7062445	39	2.2	39	89	4	136	12	21	21	44	1.85
7062970--7063406	213	2.0	213	95	0	775	23	28	14	33	1.94
7069005--7069036	16	2.0	16	100	0	64	31	6	18	43	1.75
7072819--7072867	24	2.0	24	96	0	89	14	28	20	36	1.92
7073103--7073149	18	2.6	18	82	0	58	27	34	10	27	1.90
7073394--7073419	3	8.7	3	100	0	52	30	34	34	0	1.58
7076390--7076423	2	17.0	2	100	0	68	50	0	0	50	1.00
7082559--7082599	2	20.5	2	100	0	82	51	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199