genome.fa.s18.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  127  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42550140--42550193	23	2.3	24	81	9	76	22	20	14	42	1.88
42555248--42555311	22	2.9	22	90	0	92	21	15	15	46	1.83
42556618--42556679	13	4.8	13	81	0	79	30	6	24	38	1.80
42556895--42556968	21	3.6	19	78	10	67	51	0	1	47	1.09
42568321--42568355	17	2.1	17	89	10	54	28	34	11	25	1.91
42569967--42570053	32	2.9	28	76	14	84	43	26	14	14	1.85
42569993--42570060	32	2.1	32	91	0	109	45	25	11	17	1.82
42571621--42571702	40	2.0	40	90	0	128	30	15	17	36	1.91
42575849--42576111	141	1.9	140	87	2	384	37	11	15	35	1.83
42584938--42584997	30	2.0	30	96	0	111	25	3	15	56	1.54
42591542--42591594	24	2.2	25	82	3	63	50	16	22	9	1.74
42591597--42591676	23	3.4	23	84	3	88	65	18	8	7	1.44
42591597--42591648	25	2.1	25	92	0	86	69	17	5	7	1.33
42595095--42595137	18	2.4	18	88	3	61	53	11	18	16	1.72
42596172--42596862	341	2.0	340	98	0	1328	32	16	14	36	1.89
42603870--42603987	61	1.9	61	98	0	227	31	17	11	38	1.86
42604649--42604682	17	2.0	17	94	0	59	52	5	14	26	1.64
42615401--42615427	14	1.9	14	100	0	54	22	18	7	51	1.70
42615592--42615616	13	1.9	13	100	0	50	68	0	0	32	0.90
42618053--42618090	18	2.1	19	90	5	60	60	5	0	34	1.19
42621915--42621989	20	3.7	20	68	18	55	20	28	18	33	1.96
42621916--42622022	41	2.6	41	89	0	151	20	29	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42621937--42622003	20	3.3	20	70	4	62	17	31	19	31	1.95
42629458--42629520	30	2.1	30	82	5	74	19	47	0	33	1.49
42629609--42629645	19	1.9	19	89	10	58	27	27	0	45	1.54
42630672--42630798	47	2.6	49	82	3	150	22	11	29	36	1.90
42631346--42631408	25	2.6	25	84	2	74	26	19	12	41	1.87
42633312--42633362	22	2.3	23	80	16	63	47	5	3	43	1.46
42633935--42633973	19	1.9	19	85	10	51	53	15	5	25	1.62
42635272--42635300	10	2.7	11	89	10	51	20	6	0	72	1.07
42640371--42640395	13	1.9	13	100	0	50	52	8	0	40	1.31
42640927--42641014	45	2.0	45	93	0	149	28	17	4	50	1.65
42644859--42644905	16	2.9	16	75	9	51	38	12	14	34	1.85
42645820--42645997	68	2.6	69	83	6	200	34	19	12	33	1.89
42646213--42646244	16	1.9	17	93	6	57	9	15	0	75	1.05
42648651--42648829	20	9.0	20	74	3	137	46	15	21	17	1.84
42648661--42648829	40	4.2	40	76	0	169	45	15	21	17	1.85
42648651--42648829	80	2.3	79	87	1	241	46	15	21	17	1.84
42653371--42653403	17	1.9	17	93	0	57	57	15	12	15	1.65
42663063--42663130	33	2.1	33	97	0	127	25	11	10	52	1.69
42663380--42663426	22	2.1	21	77	18	51	10	14	0	74	1.07
42663392--42663449	28	2.1	26	84	15	73	8	18	0	72	1.10
42663387--42663440	24	2.4	21	77	22	56	9	16	0	74	1.07
42666268--42666303	4	9.0	4	88	11	56	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42685742--42685767	13	2.0	13	100	0	52	46	7	7	38	1.61
42686641--42686685	22	2.0	22	91	0	72	51	17	17	13	1.77
42689272--42689454	40	4.6	40	81	8	187	24	20	26	28	1.99
42689272--42689451	80	2.3	81	83	10	212	23	21	27	27	1.99
42689352--42689501	40	3.8	38	80	10	131	25	22	28	24	1.99
42703723--42703785	22	2.9	22	80	4	65	47	17	17	17	1.83
42713937--42714035	52	1.9	50	83	4	126	50	5	5	39	1.46
42725774--42725825	26	2.0	26	96	0	95	13	23	34	28	1.92
42725595--42725856	103	2.6	102	90	4	404	18	20	30	30	1.96
42740707--42740763	30	1.9	30	92	0	96	29	10	5	54	1.56
42740714--42740763	15	3.3	15	75	10	57	28	10	4	58	1.49
42741536--42742261	363	2.0	363	88	1	1087	34	20	19	25	1.96
42749848--42749878	15	2.1	15	100	0	62	35	19	19	25	1.95
42756878--42756902	12	2.1	12	100	0	50	32	0	16	52	1.44
42762002--42762038	9	4.1	9	85	0	56	48	10	10	29	1.72
42762252--42762311	30	2.0	31	83	9	79	21	38	0	40	1.54
42762398--42762446	17	2.8	16	79	14	53	26	32	0	40	1.56
42764910--42765619	354	2.0	353	90	1	1127	30	11	21	37	1.88
42765592--42765643	24	2.2	24	89	0	77	36	5	7	50	1.55
42768784--42768974	95	2.0	95	85	0	256	23	21	23	30	1.99
42769973--42770021	25	2.0	25	87	0	71	46	6	20	26	1.73
42774378--42774430	24	2.2	24	83	6	63	35	5	11	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42776250--42776291	21	2.0	21	100	0	84	33	14	23	28	1.94
42777634--42777673	20	2.1	18	86	13	53	57	2	15	25	1.50
42779345--42780214	98	8.9	98	90	0	1317	21	20	24	32	1.98
42792223--42792262	20	2.1	18	86	13	53	57	2	15	25	1.50
42795418--42795643	42	5.3	43	81	3	244	30	30	17	22	1.96
42799479--42799506	14	2.0	14	100	0	56	64	21	7	7	1.43
42800078--42800125	21	2.3	21	100	0	96	41	20	8	29	1.81
42800612--42800653	16	2.5	17	92	7	68	45	0	0	54	0.99
42800759--42800955	7	28.0	7	69	8	69	41	35	0	22	1.58
42800839--42800968	14	9.2	14	72	12	88	46	30	0	22	1.57
42800839--42800968	28	4.6	28	74	9	102	46	30	0	22	1.57
42800839--42800968	7	18.4	7	72	7	75	46	30	0	22	1.57
42801190--42801242	22	2.4	22	71	9	54	60	3	1	33	1.26
42801273--42801425	42	3.7	42	94	1	256	26	32	22	18	1.97
42801469--42801603	40	3.2	40	82	11	173	19	20	24	35	1.96
42801469--42801594	45	2.9	45	85	8	165	20	20	23	34	1.96
42803343--42803398	9	6.2	9	83	8	78	28	8	23	39	1.85
42803343--42803394	18	2.9	18	94	0	86	26	9	25	38	1.86
42804034--42804104	29	2.4	29	85	0	88	36	8	22	32	1.84
42804092--42804243	29	5.3	29	79	9	159	40	11	25	23	1.88
42804092--42804222	57	2.3	57	88	4	183	39	11	26	22	1.88
42812403--42812489	39	2.2	39	89	0	138	33	2	18	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42818406--42818474	3	24.0	3	79	8	54	56	0	8	34	1.30
42818414--42818464	15	3.5	15	84	10	70	52	0	11	35	1.38
42819817--42819885	35	2.0	35	100	0	138	20	11	50	17	1.76
42820425--42820780	44	8.2	44	66	7	161	27	23	19	29	1.98
42820328--42820812	130	3.7	130	89	1	781	27	24	19	28	1.99
42820745--42821102	95	3.7	95	93	1	608	29	22	19	28	1.98
42820745--42821102	192	1.9	190	92	1	608	29	22	19	28	1.98
42821099--42821269	86	2.0	87	90	1	272	26	23	22	27	1.99
42821126--42821265	44	3.2	43	67	18	110	27	22	23	26	2.00
42825379--42825422	19	2.3	20	84	7	56	40	11	20	27	1.86
42827633--42827701	3	24.0	3	79	8	54	56	0	8	34	1.30
42827641--42827691	15	3.5	15	84	10	70	52	0	11	35	1.38
42829041--42829109	35	2.0	35	100	0	138	20	11	50	17	1.76
42833420--42833483	32	2.0	32	96	0	119	18	10	9	60	1.56
42835808--42835916	55	2.0	55	98	0	209	47	17	0	34	1.48
42839978--42840009	16	1.9	17	93	6	57	53	0	0	46	1.00
42840002--42840214	61	3.4	63	69	17	194	41	2	6	49	1.41
42840041--42840219	54	3.1	54	65	22	137	41	2	7	49	1.43
42839965--42840256	120	2.4	120	91	2	473	42	2	5	50	1.36
42840085--42840119	18	2.0	17	88	5	52	40	0	0	60	0.97
42840205--42840239	18	2.0	17	88	5	52	45	0	0	54	0.99
42840068--42840253	54	3.2	54	66	21	142	43	1	4	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42840193--42840467	147	1.9	149	96	1	509	47	2	3	46	1.33
42840352--42840386	18	2.0	17	88	5	52	45	0	0	54	0.99
42840548--42840642	45	2.1	45	88	1	138	32	27	5	34	1.79
42840623--42840674	16	3.2	16	94	0	86	34	36	0	28	1.58
42844061--42844111	13	3.9	13	77	10	59	37	0	1	60	1.08
42848581--42848618	19	1.9	19	89	5	58	52	15	0	31	1.43
42851805--42851844	9	4.1	9	82	17	53	22	30	2	45	1.66
42858257--42858281	13	1.9	13	100	0	50	64	16	8	12	1.49
42858826--42858904	29	2.8	29	86	5	99	32	26	6	34	1.82
42858906--42858961	27	2.1	26	86	3	76	60	17	0	21	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199