genome.fa.s18.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  197  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62209124--62209168	18	2.6	17	82	6	54	33	13	8	44	1.75
62209243--62209322	35	2.3	35	86	2	106	38	12	10	38	1.77
62209240--62209349	17	6.1	18	74	15	93	35	14	11	38	1.83
62209401--62209450	17	2.8	18	90	3	75	26	14	8	52	1.68
62209364--62209529	80	2.1	80	86	2	226	27	12	12	47	1.77
62209446--62209606	17	9.0	17	70	14	76	30	9	11	49	1.70
62209567--62209646	19	4.1	20	80	6	101	38	11	10	40	1.75
62214291--62214338	24	2.0	23	84	4	60	72	2	10	14	1.19
62217097--62217122	2	13.0	2	100	0	52	50	50	0	0	1.00
62221996--62222165	86	2.0	86	92	0	286	28	16	18	35	1.93
62230906--62230981	23	3.3	23	90	0	125	30	27	21	21	1.98
62231206--62231244	18	2.2	17	86	13	53	46	20	0	33	1.51
62234300--62234498	50	3.8	50	86	4	245	22	29	22	26	1.99
62237912--62237952	17	2.3	18	87	12	66	48	14	12	24	1.78
62237919--62237953	17	2.1	17	100	0	70	48	17	11	22	1.79
62238825--62238879	29	1.9	28	81	3	65	58	0	10	30	1.33
62239212--62239273	18	3.6	18	77	16	69	58	0	6	35	1.24
62239209--62239273	35	1.9	33	84	12	87	56	0	7	35	1.28
62240538--62240567	15	1.9	16	93	6	53	6	0	46	46	1.29
62241331--62241748	44	9.7	43	72	9	248	26	21	20	31	1.98
62241419--62241581	86	1.9	90	83	5	217	26	21	20	31	1.98
62253751--62253805	29	1.9	28	81	3	65	58	0	10	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62254138--62254199	18	3.6	18	77	16	69	58	0	6	35	1.24
62254135--62254199	35	1.9	33	84	12	87	56	0	7	35	1.28
62255460--62255489	15	1.9	16	93	6	53	6	0	46	46	1.29
62255922--62255965	22	2.0	22	82	8	54	77	6	4	11	1.11
62259558--62259620	28	2.2	29	78	13	69	39	0	0	60	0.97
62263424--62263489	23	2.9	23	93	4	107	40	4	9	45	1.56
62263754--62263814	33	1.9	32	83	6	79	37	14	11	36	1.83
62263745--62263886	31	4.5	31	67	8	79	32	12	14	40	1.84
62268759--62268796	4	9.8	4	82	5	51	71	2	2	23	1.12
62268759--62268796	15	2.4	16	91	4	60	71	2	2	23	1.12
62268760--62268795	11	3.2	11	92	4	54	69	2	2	25	1.15
62278351--62278389	13	3.0	13	88	7	53	48	28	7	15	1.72
62278626--62278660	16	2.2	16	89	0	52	42	14	14	28	1.84
62279670--62279708	4	9.0	4	84	15	51	23	2	5	69	1.21
62284916--62284946	5	6.2	5	100	0	62	41	19	19	19	1.90
62285854--62285914	30	2.0	31	93	3	106	37	0	42	19	1.52
62285963--62285999	9	4.1	9	85	0	56	29	8	13	48	1.71
62296411--62296453	22	2.0	22	90	0	68	25	11	27	34	1.91
62296329--62296497	82	2.1	82	87	2	250	33	15	20	29	1.94
62297991--62298120	63	2.1	63	98	0	251	23	40	11	24	1.87
62298627--62298653	5	5.4	5	100	0	54	37	0	0	62	0.95
62300018--62300044	4	6.8	4	100	0	54	51	22	0	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62300282--62300340	29	2.0	30	86	3	84	22	23	15	38	1.92
62303397--62303462	33	2.0	33	84	0	87	36	12	6	45	1.66
62304233--62304276	18	2.4	20	75	21	51	29	0	4	65	1.12
62309042--62310161	162	7.0	162	85	5	1467	22	16	20	39	1.92
62310256--62310383	61	2.1	62	97	2	249	29	10	17	41	1.84
62311723--62311853	62	2.1	63	84	10	173	44	9	4	41	1.57
62318454--62318577	62	2.0	61	81	7	144	45	11	4	39	1.59
62318901--62319010	54	2.0	54	89	0	166	50	8	12	29	1.69
62325019--62325081	28	2.2	28	77	8	65	61	1	12	23	1.39
62336533--62336580	11	4.7	11	77	15	50	75	2	4	18	1.07
62336640--62336702	29	2.2	28	78	13	67	66	7	0	25	1.18
62336902--62337026	9	13.4	9	70	20	62	35	5	0	58	1.27
62336933--62337028	8	10.9	8	78	14	59	38	4	0	57	1.18
62336984--62337008	11	2.3	11	100	0	50	40	0	0	60	0.97
62337025--62337082	32	1.9	32	83	13	79	32	0	3	63	1.11
62337100--62337320	92	2.5	91	84	7	274	31	8	23	36	1.85
62345291--62345319	15	2.0	15	93	6	51	44	0	0	55	0.99
62346169--62346277	54	2.0	54	92	0	182	48	9	11	30	1.71
62350468--62350728	89	3.0	87	80	5	240	34	19	8	37	1.81
62350534--62350727	89	2.2	85	84	7	264	35	19	9	36	1.84
62352500--62352620	50	2.4	50	88	2	172	33	11	19	36	1.87
62356012--62356135	62	2.0	61	85	3	169	33	9	16	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62356263--62356343	31	2.6	31	81	9	87	34	9	4	50	1.57
62356223--62356342	61	2.0	61	83	3	152	35	12	5	45	1.66
62358050--62358075	5	5.2	5	100	0	52	38	19	19	23	1.93
62358854--62358913	30	2.0	30	90	0	93	35	0	45	20	1.51
62358961--62358997	9	4.1	9	92	0	65	29	10	13	45	1.77
62359199--62359329	30	4.4	29	80	12	124	47	3	14	34	1.62
62629790--62629822	16	2.1	16	88	5	50	69	9	0	21	1.15
62629789--62629853	13	4.6	14	77	11	62	70	6	0	23	1.09
62632747--62632783	16	2.4	16	90	4	58	16	2	0	81	0.81
62632749--62632788	16	2.4	16	83	4	53	15	2	0	82	0.77
62634594--62634782	89	2.2	88	81	8	208	35	16	8	39	1.80
62634915--62634991	41	1.9	40	83	2	100	68	3	2	24	1.19
62634898--62634984	10	8.4	10	69	12	50	67	3	2	26	1.18
62635222--62635327	29	3.7	28	76	9	88	36	4	0	57	1.26
62635276--62635309	11	3.1	11	95	0	59	38	0	0	61	0.96
62635248--62635341	40	2.3	40	78	7	102	36	3	0	60	1.13
62635239--62635342	10	10.4	10	69	15	72	38	2	0	58	1.13
62635239--62635336	30	3.3	30	79	2	81	39	3	0	57	1.14
62635313--62635345	11	3.0	11	87	12	50	42	0	0	57	0.98
62640921--62640987	29	2.2	29	81	7	80	43	14	8	32	1.77
62642110--62642296	88	2.2	86	86	9	272	36	16	9	36	1.82
62642429--62642454	10	2.6	10	100	0	52	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62642684--62642808	9	13.4	9	70	20	62	34	5	0	59	1.27
62642715--62642823	8	12.5	8	74	17	51	35	3	0	60	1.14
62642672--62642817	19	7.9	18	68	10	71	34	5	0	58	1.26
62642881--62643100	92	2.5	90	83	7	261	30	9	23	36	1.86
62644973--62645071	51	1.9	51	93	0	171	32	9	18	40	1.82
62645532--62645556	13	1.9	13	100	0	50	16	0	0	84	0.63
62645574--62645613	20	2.0	20	85	5	53	30	0	7	62	1.23
62648779--62648903	62	2.0	61	85	1	169	34	8	16	40	1.79
62648778--62648875	29	3.2	29	65	10	70	33	9	18	38	1.82
62649113--62649189	30	2.6	30	75	4	84	45	10	2	41	1.52
62652195--62652244	17	2.7	20	78	18	70	10	0	44	46	1.37
62656824--62656873	17	2.7	20	78	18	70	10	0	44	46	1.37
62659454--62659540	42	2.1	42	100	0	174	25	19	11	43	1.84
62660181--62660211	7	4.4	7	100	0	62	12	48	0	38	1.42
62660164--62660211	20	2.3	21	85	3	62	12	45	0	41	1.42
62671943--62672073	67	2.0	67	95	0	235	27	33	16	22	1.95
62675847--62675881	12	2.8	12	91	4	52	31	8	0	60	1.27
62675970--62676004	4	8.8	4	87	0	52	25	2	0	71	1.00
62676070--62676111	19	2.2	19	87	8	59	30	0	2	66	1.04
62676265--62676530	130	2.0	130	90	2	417	38	13	12	36	1.82
62682417--62682509	18	5.2	18	84	0	114	31	15	24	29	1.95
62682417--62682509	36	2.6	36	87	0	141	31	15	24	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62684847--62684873	14	1.9	14	100	0	54	66	0	0	33	0.92
62687831--62687864	17	1.9	18	88	5	52	47	0	0	52	1.00
62690649--62690682	18	1.9	17	94	5	59	38	8	0	52	1.33
62691077--62691395	108	3.0	107	87	5	430	30	15	17	35	1.92
62693961--62694008	24	2.0	24	95	0	87	41	6	29	22	1.78
62695739--62695788	7	6.9	7	77	22	50	82	0	18	0	0.68
62695739--62695786	6	7.8	6	82	13	62	83	0	16	0	0.65
62695742--62695787	24	1.9	24	91	8	76	82	0	17	0	0.67
62695739--62695786	13	3.8	13	76	17	57	83	0	16	0	0.65
62697138--62698313	50	23.7	49	68	11	550	32	23	20	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199