genome.fa.s18.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  27  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11356884--11357191	43	7.2	43	85	0	375	27	30	16	25	1.96
11360802--11360845	22	1.9	24	86	9	65	70	4	2	22	1.17
11360782--11360844	21	3.0	20	75	13	54	71	7	1	19	1.19
11361010--11361061	5	10.4	5	100	0	104	38	0	0	61	0.96
11363339--11363395	27	2.1	27	96	0	105	21	15	3	59	1.51
11364001--11364075	7	10.7	7	72	5	53	42	46	1	9	1.44
11364001--11364080	35	2.3	35	82	0	97	43	45	1	10	1.45
11364135--11364184	14	3.7	13	77	20	50	40	44	0	16	1.47
11364137--11364184	20	2.3	21	82	3	62	37	45	0	16	1.48
11364625--11364776	41	3.7	41	85	4	218	28	26	24	20	1.99
11364789--11364924	39	3.4	39	77	6	157	20	22	22	35	1.96
11364791--11364922	40	3.3	38	76	10	122	21	22	22	33	1.97
11368985--11369009	13	1.9	13	100	0	50	32	4	24	40	1.73
11370804--11370914	41	2.7	41	97	0	204	29	22	28	18	1.98
11370776--11370949	41	4.2	41	85	1	152	31	18	25	23	1.98
11376004--11376063	19	3.0	20	80	11	61	58	0	1	40	1.08
11376025--11376104	28	2.9	28	68	22	69	55	1	2	41	1.21
11376027--11376104	19	4.2	18	70	14	61	56	1	2	39	1.21
11377237--11377305	11	6.5	11	69	21	58	40	4	1	53	1.30
11377270--11377305	18	2.0	18	100	0	72	38	0	0	61	0.96
11378511--11378574	31	2.3	27	74	25	69	51	9	6	32	1.59
11378862--11378923	24	2.5	25	74	10	65	46	4	0	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11383355--11383380	5	5.2	5	100	0	52	38	19	0	42	1.51
11400700--11400737	18	2.1	19	90	5	60	52	5	21	21	1.66
11406993--11407018	6	4.3	6	100	0	52	15	53	0	30	1.42
11409112--11409155	21	2.1	21	82	0	52	11	38	34	15	1.84
11411239--11411278	14	2.9	14	88	0	62	35	5	15	45	1.68
11411262--11411301	20	2.0	20	90	0	62	30	10	10	50	1.69
11411247--11411313	34	1.9	35	90	3	109	32	7	11	47	1.68
11411241--11411317	14	5.0	15	72	20	52	33	7	14	44	1.74
11414112--11414162	18	2.8	18	75	0	66	39	3	43	13	1.63
11427206--11427341	56	2.5	55	84	6	165	22	28	22	26	1.99
11427204--11427341	50	2.6	50	84	6	159	22	28	22	26	1.99
11429677--11429721	24	1.9	24	86	4	65	46	8	4	40	1.55
11448825--11448874	20	2.6	19	78	9	57	34	4	4	58	1.36
11451428--11451520	39	2.5	37	80	7	98	27	29	22	20	1.98
11451876--11451911	3	12.0	3	87	0	54	61	5	0	33	1.19
11451876--11451911	12	3.0	12	95	0	63	61	5	0	33	1.19
11452617--11452651	16	2.2	16	89	0	52	2	14	8	74	1.17
11467618--11467651	18	1.9	17	88	5	50	32	0	8	58	1.29
11468540--11468590	6	8.5	6	100	0	102	31	0	52	15	1.43
11475181--11475337	78	2.0	78	97	0	296	48	23	14	14	1.79
11479152--11479267	58	2.0	58	100	0	232	36	12	25	25	1.91
11479718--11479759	22	1.9	22	100	0	84	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11479727--11479858	17	8.1	16	65	23	71	58	0	1	40	1.07
11479748--11479819	11	6.9	11	77	20	75	55	0	1	43	1.08
11479732--11479808	40	1.9	41	91	2	129	58	0	1	40	1.06
11479748--11479849	51	2.0	52	96	1	188	57	0	1	40	1.10
11479792--11479857	30	2.3	30	89	5	100	62	0	1	36	1.05
11486253--11486285	13	2.6	13	90	4	50	30	3	0	66	1.06
11493357--11493403	23	2.1	23	81	18	55	34	6	0	59	1.23
11500295--11500344	21	2.3	22	86	3	66	54	6	2	38	1.37
11521928--11521976	6	8.7	6	78	13	50	20	36	12	30	1.89
11521942--11521982	18	2.3	18	86	0	55	24	36	9	29	1.87
11529150--11529198	20	2.5	19	81	15	55	61	0	2	36	1.08
11529373--11529419	14	3.3	14	80	16	60	55	4	0	40	1.19
11529549--11529612	19	3.4	19	81	16	71	25	7	1	65	1.28
11529571--11529612	10	4.3	10	81	6	50	21	7	2	69	1.25
11530542--11530587	13	3.5	13	81	0	56	43	17	0	39	1.49
11530859--11530939	40	2.0	40	90	0	126	43	16	2	38	1.61
11533108--11533163	22	2.6	21	77	5	67	17	7	10	64	1.47
11538135--11538211	40	1.9	39	82	10	93	24	25	24	24	2.00
11538962--11539272	83	3.4	95	77	16	323	38	15	1	44	1.55
11543747--11543813	35	1.9	35	93	0	116	43	8	20	26	1.82
11556468--11556510	6	7.3	6	89	5	70	0	60	0	39	0.97
11556570--11556619	25	2.0	25	92	0	82	4	36	4	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11559495--11559550	21	2.7	21	94	0	94	28	33	8	28	1.87
11561120--11561153	18	2.0	17	88	11	52	50	11	0	38	1.39
11564111--11564171	28	2.2	29	82	8	81	36	16	0	47	1.47
11568747--11568777	16	1.9	16	93	0	53	12	0	29	58	1.35
11568784--11568837	20	2.8	18	82	15	65	22	0	3	74	0.98
11568782--11568834	22	2.5	20	85	8	79	22	0	3	73	0.99
11568872--11568904	15	2.2	15	89	10	50	33	24	6	36	1.80
11571293--11571344	26	2.0	26	92	0	86	28	34	21	15	1.94
11571305--11571455	72	2.1	71	91	2	241	30	29	16	23	1.96
11571374--11571597	104	2.2	104	93	1	378	31	31	19	17	1.95
11571925--11571988	30	2.2	29	81	10	76	29	28	6	35	1.82
11571932--11571988	30	1.9	30	85	3	80	29	24	7	38	1.82
11574081--11574194	37	3.0	38	80	7	124	23	20	23	32	1.98
11580610--11580670	25	2.4	25	76	13	61	65	1	0	32	1.02
11587359--11587386	10	2.8	10	100	0	56	28	7	0	64	1.20
11587793--11587840	20	2.4	20	89	0	69	27	2	27	43	1.66
11587827--11587875	9	5.6	9	85	4	55	28	8	22	40	1.82
11587806--11587866	18	3.3	18	81	6	61	29	6	22	40	1.79
11587822--11587874	17	3.1	17	83	2	61	28	9	24	37	1.86
11588199--11588234	8	4.2	8	86	13	54	27	2	0	69	1.02
11588538--11588566	14	2.0	15	93	6	51	68	0	0	31	0.89
11588298--11588771	151	3.1	153	87	5	683	52	6	8	31	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11590263--11590301	9	4.3	9	80	0	51	35	0	0	64	0.94
11591994--11592040	23	2.0	24	88	8	71	34	2	0	63	1.06
11592007--11592055	23	2.1	24	85	11	66	38	2	0	59	1.09
11593544--11593577	17	2.0	17	88	0	50	61	2	0	35	1.11
11594862--11594940	13	6.5	13	75	16	71	44	1	7	46	1.40
11594859--11594926	23	3.0	23	93	0	118	45	1	5	47	1.36
11609882--11609952	29	2.4	29	79	9	72	49	9	7	33	1.63
11615743--11615767	5	5.0	5	100	0	50	80	0	0	20	0.72
11624707--11624801	31	3.1	30	76	11	88	37	11	11	38	1.78
11639387--11639435	24	2.0	24	84	7	64	20	10	2	67	1.30
11644208--11644321	58	2.0	58	92	3	194	22	17	21	38	1.93
11660055--11660129	22	3.3	23	74	17	75	49	1	2	46	1.24
11662671--11662705	6	5.8	6	100	0	70	68	0	0	31	0.90
11671882--11671928	21	2.2	22	92	3	78	21	38	19	21	1.94
11680504--11680537	2	17.0	2	93	0	59	0	47	0	52	1.00
11680913--11680946	14	2.3	15	90	5	52	0	17	0	82	0.67
11681388--11681412	7	3.6	7	100	0	50	12	0	0	88	0.53
11687147--11687184	19	2.0	19	85	10	51	65	2	0	31	1.06
11688902--11688934	13	2.5	13	95	0	57	15	39	24	21	1.91
11697702--11697752	26	2.0	26	92	0	84	33	11	11	43	1.78
11715709--11715749	21	2.0	21	90	0	64	51	12	12	24	1.73
11717196--11717234	20	1.9	21	89	5	62	64	0	5	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11719611--11719675	32	2.0	32	100	0	130	47	18	3	30	1.64
11726750--11726798	21	2.3	20	80	19	55	30	2	8	59	1.38
11727504--11727552	24	2.0	24	100	0	98	34	16	4	44	1.66
11733179--11733212	12	2.8	12	86	0	50	47	2	0	50	1.16
11736785--11736857	23	3.4	22	76	14	71	35	1	0	63	1.04
11736795--11736936	17	7.7	18	67	22	82	35	3	0	60	1.14
11736795--11736937	10	14.6	9	70	20	76	35	3	0	60	1.14
11736863--11736929	35	2.0	34	82	5	82	35	4	0	59	1.18
11736863--11736937	26	2.8	25	74	9	69	34	4	0	61	1.15
11736988--11737047	31	1.9	31	90	6	95	56	8	1	33	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199