genome.fa.s18.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  122  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40830682--40830898	80	2.7	79	87	3	301	24	20	27	26	1.99
40845558--40845596	18	2.2	18	90	9	62	71	2	20	5	1.17
40847750--40847791	22	2.0	21	90	4	66	30	4	35	28	1.78
40850107--40850144	10	3.8	10	80	13	51	28	28	15	26	1.96
40850098--40850166	20	3.5	20	86	13	90	26	27	13	33	1.93
40853387--40853470	15	5.7	15	73	16	61	7	16	1	75	1.09
40853433--40853476	19	2.2	20	88	4	63	6	11	2	79	1.01
40863300--40863485	40	4.7	40	86	5	225	24	22	27	26	2.00
40863301--40863518	80	2.7	79	80	7	210	25	21	27	25	1.99
40871185--40871370	40	4.7	40	86	5	225	24	22	27	26	2.00
40871186--40871393	80	2.6	79	81	8	208	25	21	26	25	2.00
40873076--40873131	23	2.5	23	77	11	62	7	19	5	67	1.34
40878959--40879197	47	5.1	47	92	0	379	32	9	30	27	1.89
40879316--40879394	37	2.1	37	88	4	115	25	18	30	25	1.98
40881258--40881360	43	2.4	43	100	0	206	22	15	35	26	1.94
40881342--40881415	29	2.6	29	89	4	105	25	16	32	25	1.96
40881805--40882268	40	11.6	40	94	0	784	25	22	26	24	2.00
40885974--40886065	47	2.0	47	95	0	166	33	8	27	30	1.87
40887848--40887945	27	3.5	28	87	5	119	24	13	28	33	1.93
40887876--40887958	27	3.0	27	84	5	87	28	12	25	33	1.92
40891560--40891605	15	3.0	15	78	15	58	23	32	13	30	1.93
40895520--40895652	66	2.0	66	98	0	257	27	24	9	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40903900--40903938	15	2.6	15	100	0	78	15	10	5	69	1.34
40905626--40905683	29	2.0	30	86	10	84	62	1	24	12	1.39
40913015--40913074	28	2.3	26	82	8	68	15	10	5	70	1.32
40915906--40915947	20	2.1	20	86	8	59	52	9	4	33	1.55
40914712--40916319	803	2.0	803	92	0	2675	38	16	16	28	1.90
40916649--40916776	64	2.0	64	92	0	211	25	18	17	38	1.92
40919130--40919163	16	2.1	16	100	0	68	58	0	5	35	1.22
40935472--40935505	12	2.8	12	100	0	68	70	0	17	11	1.16
40935484--40935521	18	2.1	18	90	9	60	71	0	21	7	1.11
40940795--40940869	33	2.2	34	92	2	125	37	6	13	42	1.70
40941432--40941559	64	2.0	64	96	0	238	27	17	16	38	1.91
40950814--40950998	79	2.3	81	82	7	218	24	23	27	24	2.00
40950815--40950998	40	4.6	39	80	9	194	25	23	27	23	2.00
40950867--40951031	79	2.1	79	83	6	201	26	21	27	24	1.99
40954915--40954941	14	1.9	14	100	0	54	33	14	14	37	1.88
40969788--40969854	24	2.7	25	77	11	75	64	2	7	25	1.34
40974185--40974246	23	2.7	23	84	0	79	37	25	6	30	1.81
40974605--40974651	19	2.4	19	75	10	51	19	25	17	38	1.92
40989412--40989469	20	2.9	21	77	12	59	31	12	34	22	1.91
40990958--40991015	29	2.0	30	83	10	75	63	5	20	10	1.44
40992095--40992128	17	2.0	17	94	0	59	23	26	11	38	1.89
40993755--40993792	18	2.2	17	86	9	51	47	5	39	7	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40994079--40994133	20	2.8	20	75	10	58	32	5	10	50	1.60
41001935--41002158	40	5.7	40	84	5	260	24	21	28	26	1.99
41001935--41002158	79	2.8	79	80	7	240	24	21	28	26	1.99
41002025--41002181	80	2.0	79	83	6	201	25	20	28	26	1.99
41001942--41002181	119	2.0	119	80	7	265	25	20	27	26	1.99
41009835--41010057	39	5.7	39	82	9	249	24	21	27	26	1.99
41009874--41010080	78	2.6	77	81	10	199	26	20	27	25	1.99
41014631--41014855	40	5.7	40	87	5	305	24	22	27	25	2.00
41014631--41014888	119	2.2	119	81	6	292	25	21	27	25	1.99
41017777--41018041	40	6.6	41	77	14	187	24	23	26	25	2.00
41017777--41018041	80	3.3	81	89	5	373	24	23	26	25	2.00
41017814--41018060	119	2.1	120	78	8	270	26	22	25	25	2.00
41025210--41025242	11	3.1	11	91	4	50	27	9	27	36	1.87
41038540--41038568	11	2.7	11	94	5	51	31	20	10	37	1.86
41043219--41043262	11	3.8	12	82	11	56	63	0	6	29	1.20
41048870--41048902	11	2.9	12	82	17	52	36	6	0	57	1.23
41049501--41049839	108	3.1	109	92	2	576	32	16	16	34	1.92
41055085--41055535	45	10.1	45	73	7	328	30	23	22	23	1.99
41055098--41055540	89	5.0	89	84	1	532	30	24	22	22	1.99
41055563--41056012	45	10.1	45	74	9	359	27	16	26	29	1.97
41055687--41055892	44	4.6	44	73	7	157	27	16	26	29	1.97
41055641--41056012	89	4.2	89	80	5	385	27	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41055641--41056012	134	2.8	135	78	8	434	27	15	26	30	1.96
41056022--41056322	44	6.9	43	69	10	171	31	19	20	27	1.97
41057781--41057813	11	2.9	12	82	17	52	36	6	0	57	1.23
41058408--41058748	109	3.1	109	93	2	562	32	16	16	34	1.92
41059293--41059424	50	2.6	52	76	8	137	38	13	15	32	1.86
41064158--41064233	30	2.4	32	82	10	93	52	7	11	27	1.65
41066431--41066475	20	2.2	20	85	14	58	28	4	13	53	1.59
41068722--41068781	30	2.1	27	81	9	66	63	5	26	5	1.36
41080885--41080927	15	2.7	16	85	10	61	39	2	9	48	1.48
41080997--41081030	18	1.9	18	94	5	61	26	8	11	52	1.67
41084290--41084340	19	2.7	19	74	17	52	66	3	1	27	1.20
41084235--41084330	10	10.6	9	70	18	65	64	3	2	30	1.20
41084606--41084656	9	5.4	9	84	11	59	27	3	1	66	1.20
41084605--41084656	19	2.8	18	83	13	61	26	3	1	67	1.18
41084649--41084715	29	2.3	29	79	5	73	38	2	1	56	1.24
41084873--41085095	85	2.5	86	80	9	263	36	9	19	34	1.85
41087022--41087075	19	3.0	17	86	8	72	33	14	7	44	1.73
41088184--41088302	50	2.3	52	91	2	188	31	16	13	38	1.88
41088849--41088900	27	1.9	27	96	0	95	40	15	23	21	1.91
41089557--41089606	21	2.2	24	86	10	70	24	14	16	46	1.83
41091613--41091660	20	2.4	20	96	0	87	33	14	25	27	1.94
41093716--41093746	13	2.5	12	94	5	53	77	0	6	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41093671--41093754	44	1.9	42	81	11	98	70	3	16	9	1.28
41094881--41094937	21	2.8	20	70	17	55	70	5	17	7	1.29
41099605--41099726	45	2.8	42	82	9	140	10	23	0	64	1.30
41099682--41099776	18	5.4	17	69	11	59	7	25	0	67	1.16
41099659--41099749	6	14.7	6	75	11	58	7	23	0	69	1.14
41102221--41102270	20	2.5	20	86	0	73	32	10	24	34	1.88
41104021--41104046	13	2.0	13	100	0	52	46	7	0	46	1.31
41104436--41104474	20	1.9	21	89	5	62	35	12	28	23	1.91
41105751--41105802	18	2.9	18	80	8	61	19	17	3	59	1.52
41105807--41105905	6	16.0	6	72	8	74	5	20	2	72	1.13
41108061--41108086	13	2.0	13	100	0	52	46	7	0	46	1.31
41108476--41108514	20	1.9	21	89	5	62	35	12	28	23	1.91
41110018--41110066	18	2.9	17	82	17	66	40	16	18	24	1.90
41113920--41113961	15	3.1	13	83	16	50	71	0	23	4	1.05
41115406--41115477	36	2.0	36	94	0	126	29	11	19	40	1.86
41122906--41123137	40	5.8	40	90	2	356	26	21	28	23	1.99
41122898--41123137	82	3.0	81	91	1	374	27	21	27	23	1.99
41126817--41126858	15	2.6	16	88	11	59	66	0	26	7	1.17
41139777--41139900	47	2.7	46	75	9	126	38	23	16	20	1.93
41143948--41144022	33	2.2	34	90	2	116	42	12	6	38	1.68
41145788--41145831	18	2.4	18	88	11	63	6	18	2	72	1.17
41147477--41147520	22	2.0	22	95	0	79	34	4	36	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41148314--41148380	31	2.1	32	81	13	77	31	29	11	26	1.92
41162002--41162173	40	4.3	40	91	3	240	27	26	20	25	1.99
41162031--41162225	40	4.9	40	89	4	229	27	26	21	25	1.99
41169932--41170159	40	5.7	40	88	6	266	26	26	21	25	1.99
41169932--41170159	122	1.9	120	82	8	284	26	26	21	25	1.99
41172880--41172927	20	2.4	19	86	6	60	33	12	27	27	1.92
41177538--41177594	28	2.0	28	86	6	80	31	8	8	50	1.64
41181305--41181455	28	5.4	28	92	1	223	33	28	11	25	1.92
41189505--41189655	28	5.4	28	92	1	223	33	28	11	25	1.92
41215345--41215529	79	2.3	81	84	7	236	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199