genome.fa.s18.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  97  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32968674--32968727	21	2.6	21	72	21	51	50	1	5	42	1.36
32968729--32968762	10	3.5	10	88	8	52	67	0	5	26	1.13
32968722--32968761	9	4.4	9	87	9	55	65	0	7	27	1.20
32968722--32968762	19	2.2	18	91	4	64	65	0	7	26	1.18
32968755--32968793	11	3.7	10	83	10	51	82	0	5	12	0.83
32968755--32968793	16	2.5	15	88	12	60	82	0	5	12	0.83
32975139--32975273	26	5.3	26	77	7	116	38	26	14	20	1.91
32975164--32975237	23	3.1	23	83	11	94	35	31	16	17	1.92
32975164--32975264	49	2.1	49	83	7	125	35	29	16	17	1.93
32980421--32980503	35	2.4	35	82	8	98	49	18	6	26	1.70
32988217--32988255	19	2.1	19	85	4	53	25	7	2	64	1.33
32988191--32988561	139	2.7	139	84	7	453	24	12	10	52	1.71
32988635--32988673	12	3.2	12	79	13	53	23	0	2	74	0.94
32988834--32989269	140	3.1	137	78	8	427	51	11	10	26	1.69
32988881--32989279	140	2.9	140	83	4	486	50	11	11	26	1.72
32990430--32990481	19	2.6	20	81	6	52	46	0	1	51	1.12
32990502--32990541	13	2.9	14	85	7	55	42	5	0	52	1.23
32995843--32995876	7	4.9	7	100	0	68	55	14	0	29	1.40
32997638--32997664	12	2.2	12	100	0	54	22	14	25	37	1.93
32998739--32998776	19	2.0	20	84	5	51	76	2	5	15	1.08
32999888--32999936	15	3.4	15	80	5	57	67	4	0	28	1.09
32999901--32999966	25	2.6	25	75	22	66	68	1	0	30	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33003309--33003345	18	2.1	18	89	0	56	45	5	10	37	1.62
33006619--33006926	108	2.8	106	85	5	413	27	17	20	34	1.95
33007229--33007443	108	2.0	107	83	4	272	32	20	15	31	1.94
33007622--33007660	18	2.1	19	85	4	53	35	0	2	61	1.10
33008998--33009421	106	4.0	105	79	6	408	28	16	18	36	1.93
33009002--33009426	105	4.0	107	80	6	409	27	16	18	36	1.93
33009518--33009793	109	2.5	109	85	6	380	29	16	17	36	1.92
33009518--33009794	110	2.5	109	86	5	382	29	16	17	36	1.92
33009812--33010148	107	3.2	103	78	7	327	34	19	15	30	1.93
33011772--33011806	18	1.9	18	88	11	54	42	5	0	51	1.25
33014484--33014510	12	2.2	12	100	0	54	92	0	7	0	0.38
33015485--33015518	3	11.3	3	100	0	68	32	0	0	67	0.91
33016680--33016763	38	2.3	38	95	4	154	42	10	20	26	1.84
33023320--33023358	7	5.6	7	100	0	78	43	15	15	25	1.86
33023418--33023466	22	2.2	22	85	0	62	34	22	22	20	1.97
33023999--33024029	3	10.3	3	100	0	62	32	0	0	67	0.91
33032937--33033053	33	3.5	33	86	0	171	30	17	24	26	1.97
33034425--33034595	36	4.8	36	91	0	279	29	20	11	38	1.88
33034425--33034595	72	2.4	72	97	0	324	29	20	11	38	1.88
33039803--33039827	12	2.1	12	100	0	50	92	8	0	0	0.40
33039805--33039829	13	1.9	13	100	0	50	92	8	0	0	0.40
33046479--33046515	17	2.0	20	85	15	53	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33046797--33047040	118	2.1	118	94	1	427	38	17	4	39	1.68
33047057--33047094	7	5.7	7	84	12	53	63	0	0	36	0.95
33047055--33047094	19	2.0	19	90	9	62	65	0	0	35	0.93
33047971--33048017	23	2.0	23	91	0	76	70	2	0	27	0.99
33047969--33048022	23	2.2	24	80	9	74	62	1	0	35	1.06
33048125--33049088	155	6.3	152	84	6	1238	30	9	7	52	1.62
33048125--33049088	304	3.2	301	85	6	1290	30	9	7	52	1.62
33051470--33051513	21	2.1	21	82	0	52	52	22	4	20	1.65
33052755--33052787	17	1.9	17	88	11	50	48	21	0	30	1.50
33055582--33055618	9	4.1	9	89	0	56	45	10	10	32	1.74
33056534--33056559	5	5.2	5	100	0	52	23	19	19	38	1.93
33065311--33065362	23	2.3	22	80	12	61	17	11	5	65	1.44
33068410--33068469	25	2.4	25	97	0	111	13	13	45	28	1.81
33070141--33070184	20	2.2	20	88	8	63	54	0	4	40	1.21
33072538--33072586	22	2.2	23	82	10	66	42	18	8	30	1.79
33084209--33084273	31	2.1	31	100	0	130	35	15	20	29	1.93
33089311--33089354	19	2.3	19	84	7	54	68	0	0	31	0.90
33089325--33089364	20	2.0	21	90	5	64	60	0	2	37	1.11
33092720--33092750	9	3.4	9	90	0	53	38	22	12	25	1.90
33093081--33093149	4	17.8	4	71	11	54	66	0	2	30	1.06
33093092--33093147	12	4.9	11	77	16	60	64	0	1	33	1.04
33098116--33098155	16	2.6	16	88	4	55	22	2	2	72	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33098552--33098653	51	2.0	51	100	0	204	21	7	19	50	1.72
33109235--33109440	40	5.2	40	91	0	304	12	15	27	44	1.82
33114487--33114524	19	2.0	19	89	0	58	23	7	0	68	1.16
33117618--33117775	27	5.9	27	77	6	142	40	20	9	29	1.84
33117621--33117756	53	2.5	53	79	8	141	39	20	10	29	1.86
33118235--33118298	28	2.3	28	86	2	85	15	21	23	39	1.92
33121361--33121484	55	2.3	55	91	0	203	22	26	25	25	2.00
33122967--33122999	17	2.0	17	94	5	59	48	6	3	42	1.43
33125093--33125148	29	1.9	29	85	7	78	35	7	44	12	1.70
33130843--33131023	84	2.2	83	88	2	272	22	16	23	37	1.94
33130843--33131023	42	4.3	42	75	12	167	22	16	23	37	1.94
33141952--33142083	66	2.0	66	93	0	228	37	17	12	32	1.88
33145556--33145644	28	3.2	28	88	1	144	31	20	23	24	1.98
33145983--33146099	27	4.3	27	78	11	114	23	14	22	40	1.90
33145995--33146110	27	4.3	26	80	7	142	21	14	19	43	1.87
33155412--33155455	14	3.3	14	81	18	58	54	0	2	43	1.12
33155409--33155448	21	1.9	21	89	0	62	52	0	0	47	1.00
33155409--33155446	12	3.0	12	85	14	58	52	0	0	47	1.00
33157126--33157151	11	2.4	11	100	0	52	30	0	0	69	0.89
33159811--33159838	2	14.0	2	100	0	56	50	50	0	0	1.00
33171042--33171084	23	1.9	22	86	13	61	37	2	9	51	1.47
33179800--33179842	23	1.9	22	86	13	61	37	2	9	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33529815--33529857	23	1.9	22	86	13	61	37	2	9	51	1.47
33538565--33538607	23	1.9	22	86	13	61	37	2	9	51	1.47
33547382--33547424	23	1.9	22	86	13	61	37	2	9	51	1.47
33560046--33560080	12	2.9	12	91	8	54	2	14	0	82	0.77
33561103--33561145	10	4.2	10	80	13	52	72	0	6	20	1.08
33561116--33561170	17	3.4	17	77	7	60	78	0	5	16	0.93
33561111--33561165	12	4.8	12	78	12	53	78	0	5	16	0.93
33569752--33569794	23	1.9	22	86	13	61	37	2	9	51	1.47
33572031--33572079	3	16.3	3	95	0	89	0	30	0	69	0.89
33576889--33576931	23	1.9	22	86	13	61	37	2	9	51	1.47
33587862--33587904	23	1.9	22	86	13	61	37	2	9	51	1.47
33598520--33598562	23	1.9	22	86	13	61	37	2	9	51	1.47
33620334--33620382	18	2.7	19	84	9	66	73	6	4	16	1.19
33622492--33623384	46	19.4	46	89	0	1239	31	26	15	26	1.96
33624272--33624587	97	3.0	106	82	10	398	49	7	15	27	1.72
33624849--33624932	7	11.9	7	74	20	68	5	15	0	78	0.93
33624849--33624932	15	5.9	14	74	20	68	5	15	0	78	0.93
33624851--33624933	28	3.0	29	75	10	84	6	15	0	78	0.94
33627261--33627294	12	2.8	12	81	0	50	8	23	23	44	1.81
33632481--33632813	42	7.9	42	90	1	540	33	22	21	21	1.97
33633135--33633184	21	2.4	21	75	0	55	2	44	18	36	1.61
33638699--33638929	9	26.4	9	70	15	146	31	2	20	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33638683--33638886	25	8.3	25	70	16	122	31	2	20	45	1.64
33639270--33639318	13	3.8	12	82	15	53	42	2	10	44	1.49
33639346--33639641	74	4.1	72	94	3	531	49	4	7	39	1.50
33639346--33639641	145	2.0	146	98	0	567	49	4	7	39	1.50
33639766--33639904	67	2.1	67	93	2	235	44	13	5	36	1.66
33639969--33640001	16	2.1	16	94	0	57	51	9	12	27	1.69
33642318--33642387	21	3.3	21	87	2	95	41	54	1	2	1.24
33642334--33642386	7	7.1	8	85	12	51	45	50	0	3	1.19
33642318--33642378	7	8.7	7	90	0	95	40	55	1	1	1.19
33643158--33643195	20	1.9	20	89	10	60	50	0	2	47	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199