genome.fa.s18.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  184  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58751615--58751648	15	2.3	15	90	5	52	67	23	5	2	1.26
58754219--58754250	9	3.6	9	91	0	55	28	0	25	46	1.53
58756090--58756129	19	2.1	19	85	4	53	55	0	5	40	1.22
58758526--58758554	14	2.1	14	93	6	51	37	0	6	55	1.27
58759011--58759174	43	3.8	43	85	0	211	31	25	16	27	1.96
58761722--58761753	9	3.4	10	91	8	50	37	0	15	46	1.46
58763835--58763901	8	8.0	8	73	6	53	43	0	2	53	1.16
58765730--58765949	21	10.8	21	70	10	143	47	32	1	18	1.57
58765750--58765827	36	2.2	36	85	0	111	42	32	3	21	1.71
58765730--58765949	7	31.4	7	71	3	129	47	32	1	18	1.57
58766271--58766610	115	3.0	115	86	3	436	28	22	16	32	1.95
58766595--58766699	40	2.7	40	83	4	124	24	21	20	32	1.98
58766695--58766785	41	2.2	42	83	13	109	17	23	21	37	1.94
58767231--58767261	16	1.9	16	100	0	62	45	0	3	51	1.17
58767558--58767644	22	3.7	22	85	14	129	54	13	0	32	1.40
58767511--58767649	49	2.9	50	87	8	182	52	15	0	31	1.48
58767905--58767956	19	2.8	19	94	5	90	50	11	0	38	1.39
58768167--58768207	19	2.2	19	90	0	64	48	17	2	31	1.60
58773808--58773860	22	2.3	23	78	15	56	45	26	5	22	1.74
58775218--58775252	3	11.7	3	93	0	61	0	31	2	65	1.07
58776426--58776459	17	2.0	17	94	0	59	35	8	23	32	1.86
58780846--58780900	3	18.3	3	100	0	110	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58780847--58780914	9	7.9	8	93	1	73	32	1	0	66	1.01
58784852--58784906	25	2.2	24	81	12	67	18	3	23	54	1.59
58797758--58797798	21	2.0	21	85	9	57	56	2	0	41	1.13
58799921--58799970	13	4.2	12	78	16	59	54	2	0	44	1.11
58802548--58802611	32	2.0	32	100	0	128	18	18	6	56	1.62
58803867--58803914	22	2.2	23	85	7	64	66	12	6	14	1.42
58824972--58825018	20	2.2	20	85	7	58	31	10	10	46	1.73
58827844--58827880	18	2.0	19	89	5	58	75	5	8	10	1.17
58830671--58831221	113	4.9	113	93	0	888	26	19	26	27	1.99
58831121--58831352	73	3.2	73	87	3	324	25	20	26	27	1.99
58831700--58831743	17	2.7	17	89	6	65	29	0	27	43	1.55
58832017--58832054	14	2.7	15	88	12	62	26	0	31	42	1.56
58832087--58832131	14	3.1	14	78	15	56	24	2	42	31	1.67
58832071--58832148	29	2.7	30	72	18	76	23	1	38	37	1.63
58832514--58832557	19	2.4	18	81	7	52	75	2	4	18	1.09
58832552--58832652	47	2.2	46	89	3	148	47	7	0	44	1.32
58837304--58837503	43	4.7	43	78	1	159	25	18	28	28	1.98
58862071--58862153	35	2.4	35	74	9	89	67	0	1	31	0.98
58872200--58872292	48	1.9	48	87	8	136	20	12	25	40	1.88
58874715--58874807	48	1.9	48	87	8	136	20	12	25	40	1.88
58879269--58879304	5	7.2	5	87	12	56	19	2	0	77	0.88
58880039--58880063	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58882279--58882326	22	2.2	23	85	7	64	66	12	6	14	1.42
58883026--58883069	12	3.8	11	80	11	52	25	4	2	68	1.20
58883027--58883065	20	2.0	20	85	10	53	25	5	2	66	1.25
58883946--58884366	108	3.8	109	93	1	700	31	15	19	33	1.93
58891114--58891234	52	2.3	52	86	6	158	28	28	14	28	1.95
58893265--58893331	3	22.3	3	100	0	134	32	0	0	67	0.91
58899183--58899282	40	2.5	40	81	4	103	22	19	27	32	1.97
58899827--58899876	14	3.4	14	78	8	55	28	0	34	38	1.57
58899863--58899901	21	1.9	20	89	5	60	23	0	41	35	1.55
58903918--58903956	19	2.1	19	100	0	78	48	15	15	20	1.81
58904023--58904075	26	2.0	26	100	0	106	32	7	7	52	1.58
58907365--58907540	91	1.9	91	92	0	298	32	22	12	32	1.91
58917899--58917929	6	5.2	6	100	0	62	16	0	0	83	0.64
58918110--58918134	3	8.3	3	100	0	50	68	0	0	32	0.90
58921223--58921262	20	1.9	22	85	10	57	35	30	10	25	1.88
58923325--58923362	20	1.9	20	94	0	67	15	28	13	42	1.85
58932449--58932667	108	2.0	108	82	6	266	35	14	15	35	1.88
58934580--58934661	43	1.9	43	87	0	119	45	19	7	28	1.77
58939806--58939860	26	2.1	27	83	10	69	72	3	3	20	1.15
58941900--58941954	18	3.1	18	75	17	60	50	0	1	47	1.11
58945742--58945936	41	4.8	40	87	7	259	35	2	0	62	1.07
58945792--58945936	11	13.9	11	72	17	87	37	1	0	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58945738--58945936	82	2.4	81	89	5	285	35	2	0	62	1.06
58945833--58945936	52	2.0	53	90	5	167	39	0	0	59	1.04
58947513--58947577	32	2.0	32	94	5	114	56	12	9	21	1.63
58948407--58948460	15	3.6	15	80	7	56	48	0	51	0	1.00
58948445--58948504	27	2.2	26	83	13	77	63	0	36	0	0.95
58948471--58948510	16	2.4	16	87	4	62	67	0	32	0	0.91
58948525--58948571	20	2.3	20	82	7	60	72	2	25	0	0.96
58948471--58948557	16	5.1	16	69	17	50	64	1	34	0	1.01
58952335--58952364	13	2.3	13	100	0	60	60	0	0	40	0.97
58954155--58954255	52	1.9	52	90	4	159	34	3	2	58	1.32
58955505--58955529	13	1.9	13	100	0	50	56	4	0	40	1.18
58957389--58957454	26	2.6	27	83	9	84	45	9	0	45	1.35
58957511--58957581	27	2.6	27	93	4	117	26	29	28	15	1.96
58957622--58957752	4	32.0	4	71	18	83	67	0	32	0	0.91
58957613--58957759	30	4.6	30	75	18	127	65	0	34	0	0.92
58957634--58957763	18	6.9	18	68	18	70	66	0	33	0	0.92
58957627--58957821	36	5.2	36	74	20	161	67	0	32	0	0.91
58957614--58957761	5	31.0	5	71	18	70	66	0	33	0	0.92
58957614--58957821	75	2.8	73	85	12	261	66	0	33	0	0.92
58958098--58958156	27	2.2	27	87	0	82	30	28	25	15	1.96
58958255--58958294	11	3.7	11	86	6	64	72	0	25	2	0.97
58958317--58958355	19	2.0	21	85	10	55	23	0	7	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58961991--58962309	109	3.0	105	81	9	373	34	13	15	36	1.87
58965036--58965541	106	4.9	105	85	7	650	29	16	15	39	1.89
58969651--58969685	18	1.9	18	94	0	61	11	48	8	31	1.69
58970548--58970615	3	22.7	3	93	0	118	66	30	1	1	1.10
58970681--58970719	20	2.0	21	85	10	55	66	10	0	23	1.22
58970850--58970977	27	4.7	27	90	3	179	17	28	29	25	1.97
58971398--58971605	104	2.0	104	99	0	407	32	9	19	38	1.83
58972674--58972720	16	2.7	17	84	12	60	25	0	12	61	1.31
58976593--58976639	19	2.7	18	84	12	62	61	12	0	25	1.31
58978070--58978139	37	1.9	35	85	5	95	22	18	21	37	1.94
58978135--58978263	45	2.8	45	80	4	123	24	21	24	30	1.99
58983270--58983337	33	2.1	33	88	0	100	26	42	14	16	1.86
58985700--58985775	31	2.5	31	82	4	100	64	2	5	27	1.28
58988216--58988251	13	2.7	14	87	12	58	30	5	0	63	1.17
58988216--58988257	13	3.1	14	83	10	52	28	4	0	66	1.12
58988453--58988496	21	2.0	22	91	4	72	13	9	6	70	1.33
59002776--59002829	27	2.0	27	85	0	72	42	1	9	46	1.46
59009283--59009336	21	2.9	18	72	17	56	48	9	5	37	1.59
59012965--59013131	42	3.9	42	84	5	192	30	17	17	34	1.94
59012965--59013131	84	2.0	87	83	5	216	30	17	17	34	1.94
59013011--59013125	21	5.5	21	74	10	101	31	16	15	36	1.90
59017222--59017286	23	3.0	22	84	8	80	40	23	16	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59019107--59019274	43	3.9	43	80	9	173	20	17	27	33	1.95
59020334--59020413	32	2.5	33	80	8	85	40	22	18	18	1.92
59020413--59020476	26	2.5	26	86	0	83	39	23	20	17	1.92
59020618--59020660	11	3.7	11	76	11	50	51	27	6	13	1.67
59020608--59020690	24	3.5	24	86	0	112	48	22	6	22	1.73
59020767--59020933	27	6.2	27	81	3	176	24	22	19	33	1.97
59024607--59024639	5	6.6	5	92	0	57	18	3	0	78	0.87
59024694--59024739	23	2.0	24	83	12	60	41	4	2	52	1.33
59024693--59024731	20	2.0	19	90	5	60	41	2	2	53	1.28
59024736--59024806	13	5.1	14	69	20	51	53	5	0	40	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199