genome.fa.s18.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  120  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39782658--39782704	21	2.2	22	92	3	78	21	38	19	21	1.94
39785584--39785623	18	2.2	18	86	8	55	30	5	2	62	1.29
39785680--39785721	19	2.2	19	87	8	59	33	2	0	64	1.07
39785689--39785733	20	2.2	20	84	7	56	35	2	0	62	1.08
39785767--39785815	18	2.9	17	77	19	50	32	2	0	65	1.04
39787031--39787088	19	3.1	19	85	5	73	36	0	10	53	1.35
39788175--39788225	11	4.6	11	87	4	68	21	33	1	43	1.64
39788229--39788272	11	4.0	11	81	0	52	18	22	4	54	1.61
39788289--39788319	12	2.6	12	100	0	62	41	0	0	58	0.98
39789422--39789446	7	3.6	7	100	0	50	28	0	12	60	1.32
39790097--39790131	18	1.9	18	94	0	61	28	28	5	37	1.80
39790391--39790441	21	2.4	21	86	0	75	39	29	25	5	1.79
39790521--39790607	44	2.0	44	88	8	133	36	0	13	49	1.43
39790588--39790654	25	2.7	25	97	0	125	43	2	16	37	1.63
39790670--39791000	29	12.3	29	73	17	261	44	26	0	28	1.59
39790764--39791089	29	13.3	23	72	22	176	45	26	0	27	1.56
39790807--39790866	21	2.9	21	95	5	104	50	25	0	25	1.50
39790735--39791089	177	2.0	176	92	0	593	44	26	0	27	1.60
39790984--39791053	21	3.4	21	84	9	92	47	22	1	28	1.60
39790752--39791089	148	2.3	142	82	12	384	45	26	0	27	1.56
39794248--39794600	126	2.8	125	88	0	535	31	21	16	30	1.95
39795599--39795641	22	2.0	21	82	13	52	48	4	2	44	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39796234--39796269	18	2.0	18	88	0	54	19	2	8	69	1.27
39798745--39798777	3	11.0	3	100	0	66	33	0	0	66	0.92
39800731--39800778	25	1.9	25	82	0	60	70	2	16	10	1.24
39802664--39803869	600	2.0	600	98	0	2313	32	20	17	29	1.96
39820605--39820932	29	11.3	29	81	3	347	21	25	14	39	1.90
39820615--39820956	87	3.9	87	88	1	470	21	25	12	40	1.89
39828978--39829055	38	2.0	39	90	2	122	46	10	10	33	1.72
39840303--39840342	18	2.2	18	90	0	62	25	2	7	65	1.32
39840350--39840397	21	2.2	21	85	10	62	52	2	2	43	1.24
39843559--39843614	29	2.0	28	89	6	87	37	12	14	35	1.84
39851904--39851948	18	2.6	17	83	13	56	40	8	17	33	1.81
39860050--39860088	20	2.0	20	85	10	53	33	7	2	56	1.41
39874381--39874406	5	5.2	5	100	0	52	0	19	0	80	0.71
39882845--39882886	14	2.8	15	75	10	50	50	9	11	28	1.70
39891709--39891760	24	2.2	24	89	0	77	50	9	3	36	1.54
39896055--39896104	24	2.1	24	88	0	73	48	10	4	38	1.56
39898839--39899094	45	5.7	45	97	0	467	26	20	16	37	1.93
39905254--39905486	45	5.2	45	94	2	396	25	20	15	38	1.92
39907492--39907887	196	2.0	196	98	0	765	29	18	11	41	1.85
39909521--39909641	43	2.8	43	83	3	147	32	25	15	26	1.96
39911000--39911050	27	1.9	26	96	4	93	15	23	31	29	1.95
39910922--39911122	103	2.0	103	94	0	357	20	17	28	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39911025--39911237	76	2.8	76	91	0	354	21	19	27	32	1.97
39911062--39911200	43	3.5	42	73	18	152	20	17	27	34	1.95
39915074--39915131	22	2.6	23	72	10	66	25	3	43	27	1.71
39915074--39915136	21	2.9	22	74	9	67	23	3	47	25	1.66
39915182--39915418	123	1.9	124	88	0	359	34	10	12	43	1.76
39916367--39916577	96	2.2	97	82	7	266	43	31	1	24	1.63
39916637--39916669	15	2.3	15	89	5	50	36	30	0	33	1.58
39925472--39925670	41	4.9	41	81	2	229	29	28	21	21	1.98
39933381--39934991	804	2.0	802	91	0	2576	34	24	17	23	1.96
39939045--39939099	27	2.0	27	96	0	101	30	25	18	25	1.98
39939431--39939487	26	2.2	26	83	0	69	42	19	15	22	1.89
39945623--39945673	25	2.0	25	88	7	77	62	3	3	29	1.31
39949907--39949990	10	8.2	10	70	12	55	30	1	0	67	0.98
39949876--39949960	40	2.1	42	91	4	138	31	3	0	64	1.10
39949895--39950001	30	3.6	28	80	14	115	32	2	0	64	1.08
39949874--39950027	11	14.9	11	68	20	66	35	2	0	61	1.10
39949876--39950042	72	2.3	70	80	14	198	35	2	0	61	1.09
39949937--39949980	20	2.2	20	95	0	79	34	2	0	63	1.07
39949955--39950049	41	2.3	42	82	8	124	43	1	0	55	1.06
39949916--39950012	30	3.2	30	84	8	133	35	1	0	63	1.01
39950296--39950356	20	3.3	19	73	17	56	32	4	1	60	1.28
39950305--39950371	17	3.8	17	71	13	55	28	5	1	64	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39950284--39950364	36	2.2	37	84	8	112	29	6	3	60	1.38
39950455--39950509	27	2.0	27	86	6	76	34	0	5	60	1.20
39954071--39954116	14	3.0	16	75	12	60	32	0	15	52	1.43
39954163--39954192	9	3.3	9	90	0	51	46	13	10	30	1.75
39954324--39954376	24	2.2	25	86	3	72	50	3	0	45	1.19
39954327--39954377	26	1.9	27	84	11	70	50	3	0	45	1.20
39954307--39954399	44	2.2	44	83	11	122	52	3	0	44	1.17
39955550--39955645	43	2.2	43	83	3	113	34	14	20	30	1.93
39957505--39957603	42	2.4	42	92	0	162	23	28	13	35	1.92
39961503--39962459	132	7.2	132	93	0	1581	28	24	18	29	1.98
39962205--39962400	44	4.5	44	65	10	121	28	23	15	32	1.95
39963268--39963292	13	1.9	13	100	0	50	56	8	24	12	1.62
39965621--39965842	40	5.6	40	92	1	365	27	21	28	22	1.99
39965621--39965869	119	2.1	120	89	1	376	26	20	28	24	1.99
39968249--39968290	20	2.1	20	91	8	68	66	4	14	14	1.40
39970593--39970807	118	1.8	119	84	7	294	25	26	21	25	2.00
39970591--39970814	40	5.7	40	84	7	278	25	27	22	24	2.00
39979113--39979281	76	2.2	80	89	4	256	26	28	20	24	1.99
39979115--39979332	116	1.9	118	83	5	291	25	27	21	25	1.99
39979113--39979334	40	5.7	40	85	7	276	25	27	21	24	1.99
39985633--39985667	18	1.9	18	88	0	52	57	5	11	25	1.56
39988877--39988975	30	3.3	30	80	2	119	30	10	33	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39988890--39988977	29	3.0	29	86	1	122	28	10	35	26	1.89
39991045--39991072	2	14.0	2	100	0	56	50	0	50	0	1.00
40002655--40002683	7	4.1	7	100	0	58	31	0	27	41	1.56
40002846--40002941	48	2.0	48	91	4	158	18	16	26	38	1.92
40005418--40005447	16	1.9	15	93	6	51	36	3	26	33	1.73
40011451--40011485	17	2.0	18	94	5	63	45	5	14	34	1.68
40012708--40013179	238	2.0	239	93	0	802	30	24	8	35	1.86
40015652--40015738	25	3.5	25	74	16	81	32	19	25	22	1.98
40015724--40015814	24	3.8	24	73	7	85	36	24	25	14	1.93
40015839--40015908	25	2.8	25	71	2	70	35	14	27	22	1.93
40026082--40026165	42	2.0	42	86	9	118	16	23	36	22	1.94
40030225--40030271	25	1.9	25	87	12	71	65	8	12	12	1.46
40031642--40031720	26	3.1	26	88	1	115	36	27	21	13	1.92
40031891--40032247	27	13.2	27	77	11	295	23	14	18	42	1.88
40031891--40032252	54	6.7	54	81	4	367	23	15	18	42	1.88
40031891--40032252	81	4.5	81	82	3	408	23	15	18	42	1.88
40034769--40035015	90	2.7	90	76	9	216	34	19	15	30	1.93
40038671--40038714	18	2.5	18	82	10	56	63	9	0	27	1.24
40039234--40039347	58	2.0	58	85	3	158	13	27	9	50	1.72
40040205--40040229	13	1.9	13	100	0	50	56	4	8	32	1.47
40041556--40041618	23	2.7	24	83	16	96	15	7	22	53	1.67
40044410--40044436	11	2.5	11	100	0	54	22	7	18	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40044491--40044548	22	2.8	20	80	12	62	37	0	3	58	1.15
40044489--40044548	7	8.4	7	77	3	66	38	0	3	58	1.15
40044491--40044575	46	1.9	43	92	7	143	35	0	5	58	1.22
40046033--40046690	120	5.5	120	97	0	1156	43	2	5	48	1.39
40046413--40046453	16	2.6	16	84	3	57	48	0	0	51	1.00
40046527--40046573	16	3.0	16	78	12	53	46	0	2	51	1.13
40046621--40046668	18	2.8	18	74	22	50	45	0	2	52	1.12
40046813--40046922	39	2.6	42	83	8	127	35	28	2	33	1.72
40046902--40046939	16	2.4	16	86	0	58	28	34	2	34	1.71
40052468--40052771	161	1.9	161	100	0	608	49	6	12	30	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199