genome.fa.s18.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  194  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61441236--61441265	16	1.9	16	93	6	53	36	3	0	60	1.14
61444128--61444288	42	3.8	44	75	17	137	31	26	17	24	1.97
61444136--61444283	41	3.5	40	77	9	127	30	27	17	25	1.97
61455474--61455514	21	2.0	21	90	0	64	29	21	29	19	1.98
61458362--61458409	21	2.4	18	80	13	51	58	2	0	39	1.10
61459055--61459369	136	2.3	138	84	4	406	42	11	8	37	1.71
61465596--61465638	15	2.8	15	86	13	61	34	4	0	60	1.17
61465673--61465728	29	1.9	29	88	0	85	35	1	5	57	1.32
61467030--61467101	29	2.4	29	93	4	117	37	18	11	33	1.86
61472300--61472332	15	2.2	15	89	10	50	18	15	0	66	1.25
61473230--61473281	22	2.4	22	84	9	63	65	3	1	28	1.21
61474885--61474928	21	2.1	21	83	8	54	27	4	0	68	1.09
61475376--61475426	20	2.6	20	85	14	63	58	7	0	33	1.27
61475405--61475451	23	2.0	24	87	4	69	55	2	0	42	1.12
61476089--61476143	27	2.0	27	96	0	101	23	34	18	23	1.96
61476248--61476301	25	2.2	24	75	18	56	11	20	24	44	1.83
61476254--61476305	27	2.0	26	92	7	88	7	23	23	46	1.78
61484787--61484856	34	2.1	34	100	0	140	28	11	15	44	1.81
61488332--61488366	17	2.1	17	89	5	54	54	0	0	45	0.99
61489052--61489078	13	2.1	13	100	0	54	51	0	0	48	1.00
61493240--61493282	21	2.0	21	81	4	50	60	4	2	32	1.30
61493242--61493289	19	2.6	17	78	18	51	60	2	2	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61495970--61496014	20	2.2	21	88	4	65	40	2	8	48	1.47
61495976--61496020	20	2.2	20	84	7	56	44	0	6	48	1.29
61498035--61498066	10	3.4	10	91	8	50	71	0	0	28	0.86
61500841--61501116	139	2.0	139	90	0	435	38	10	16	34	1.83
61509378--61509677	50	5.9	50	85	3	357	20	29	23	26	1.99
61509772--61509802	13	2.4	13	94	0	53	54	12	0	32	1.38
61514487--61514535	24	2.1	23	81	11	55	55	10	0	34	1.34
61516361--61516401	18	2.2	19	86	4	57	14	7	9	68	1.39
61516716--61516758	23	1.9	23	85	4	61	34	4	2	58	1.32
61518777--61518863	45	1.9	45	81	9	106	34	4	3	57	1.36
61519790--61519826	3	12.3	3	100	0	74	32	0	0	67	0.91
61520475--61520511	19	2.0	19	89	5	58	37	0	5	56	1.22
61520475--61520525	18	2.7	19	85	8	61	41	0	5	52	1.25
61520516--61520562	10	4.7	10	84	7	60	21	0	8	70	1.14
61520516--61520562	21	2.4	19	85	7	58	21	0	8	70	1.14
61523092--61523173	31	2.7	30	79	17	98	35	7	12	45	1.69
61525841--61525881	12	3.5	12	87	9	50	0	14	7	78	0.96
61525850--61525876	12	2.2	12	100	0	54	0	7	7	85	0.75
61533154--61533451	113	2.6	113	79	4	294	33	17	12	36	1.88
61535208--61535267	25	2.4	25	94	0	102	56	21	3	18	1.55
61536917--61536971	24	2.3	23	78	9	58	43	9	0	47	1.35
61541163--61541207	14	3.1	14	78	12	54	8	28	2	60	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61541154--61541199	15	3.0	16	81	12	69	8	26	4	60	1.44
61541218--61541279	9	6.9	9	81	7	63	1	38	0	59	1.07
61541214--61541262	3	16.3	3	95	0	89	0	34	0	65	0.93
61552067--61552135	32	2.2	31	87	5	95	55	1	0	43	1.08
61553171--61553217	21	2.2	22	85	11	71	59	8	2	29	1.39
61553173--61553245	20	3.7	20	82	10	80	57	8	1	32	1.37
61553980--61554036	25	2.1	28	81	15	68	47	0	3	49	1.18
61560758--61560808	18	2.8	18	91	5	77	39	1	1	56	1.22
61560997--61561049	16	3.3	16	91	0	88	24	33	3	37	1.74
61574492--61574637	37	4.0	37	92	5	235	25	21	16	36	1.94
61574601--61574967	46	7.6	46	85	7	428	29	21	14	34	1.93
61574644--61574961	52	6.3	52	86	7	408	28	22	13	35	1.92
61574601--61574953	196	1.8	196	91	0	589	28	21	14	35	1.93
61574601--61574967	98	3.7	97	84	9	483	29	21	14	34	1.93
61587873--61588161	18	16.5	17	70	14	151	46	10	10	33	1.72
61587906--61588007	17	6.0	16	76	12	80	47	9	8	34	1.68
61587878--61588161	70	4.1	67	75	14	227	45	10	10	33	1.72
61587886--61588112	53	4.4	53	75	6	180	47	9	11	32	1.71
61588030--61588160	35	3.7	34	77	13	115	48	11	11	29	1.74
61588489--61588527	9	4.2	9	83	6	51	0	20	0	79	0.73
61588836--61588934	7	14.1	7	78	8	69	0	26	0	73	0.83
61588836--61588934	12	8.3	11	80	15	51	0	26	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61588836--61588934	29	3.6	25	71	19	81	0	26	0	73	0.83
61589266--61589432	30	5.6	28	76	14	122	47	5	13	33	1.65
61589302--61589432	59	2.2	59	82	8	149	48	6	12	32	1.66
61592475--61592539	29	2.3	29	84	10	82	44	7	4	43	1.53
61594243--61594319	22	3.6	21	77	8	66	28	29	0	41	1.56
61594359--61594417	31	1.9	31	89	3	93	37	3	0	59	1.14
61595497--61595521	7	3.6	7	100	0	50	28	0	12	60	1.32
61596764--61597829	36	32.3	35	71	21	581	43	31	0	24	1.57
61596826--61598033	30	37.6	32	70	24	504	43	30	0	24	1.56
61596861--61596887	6	4.5	6	100	0	54	37	48	0	14	1.45
61596817--61596920	23	4.6	23	75	17	110	45	28	0	25	1.60
61596956--61596985	6	5.0	6	91	0	51	33	46	0	20	1.51
61596956--61597086	56	2.3	56	77	16	146	41	32	1	23	1.64
61597006--61597074	24	2.8	24	88	4	93	46	30	0	23	1.53
61596995--61597107	56	2.0	54	81	14	131	46	29	0	24	1.53
61597274--61597329	24	2.3	24	93	0	94	46	28	0	25	1.53
61597342--61597404	18	3.5	18	68	8	56	44	28	0	26	1.55
61597372--61597434	24	2.6	24	97	0	117	44	31	0	23	1.54
61597432--61597590	24	6.6	24	69	16	114	44	30	0	25	1.54
61597498--61597560	18	3.5	18	65	8	56	44	28	0	26	1.55
61597624--61597675	24	2.2	24	100	0	104	46	30	0	23	1.53
61597576--61597638	6	10.5	6	79	6	65	39	41	0	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61597558--61597656	18	5.5	18	67	9	76	43	34	0	22	1.53
61597797--61597833	18	2.0	20	89	10	60	45	27	0	27	1.54
61597789--61598245	24	19.0	24	70	13	246	44	30	0	24	1.59
61597848--61598143	36	8.9	34	75	20	208	43	32	0	23	1.59
61597106--61598167	132	8.3	119	67	22	223	43	31	0	24	1.56
61598176--61598211	18	2.0	18	94	0	63	41	41	0	16	1.48
61601053--61601398	124	2.8	124	87	1	516	30	24	16	28	1.97
61603567--61603605	20	2.0	20	94	0	69	33	17	23	25	1.96
61605444--61605473	6	5.0	6	91	0	51	33	46	0	20	1.51
61605494--61606149	24	25.7	24	67	23	260	43	31	0	24	1.57
61605502--61605558	18	3.5	18	66	26	54	45	28	0	26	1.54
61605496--61606155	30	21.5	30	74	21	488	43	31	0	24	1.57
61605496--61606259	36	22.1	36	71	20	464	43	31	0	24	1.59
61605605--61605673	6	11.5	6	75	6	59	39	39	0	21	1.54
61605635--61605673	6	6.5	6	87	0	60	35	43	0	20	1.52
61605720--61605817	18	5.4	18	61	9	56	41	33	1	23	1.61
61605773--61605799	6	4.5	6	100	0	54	37	48	0	14	1.45
61605853--61605915	18	3.5	18	72	8	65	44	26	0	28	1.55
61605994--61606053	6	10.0	6	76	7	50	38	40	0	21	1.54
61606135--61606162	6	4.7	6	100	0	56	35	50	0	14	1.43
61606190--61606369	30	6.4	30	76	15	204	43	31	0	24	1.54
61606191--61606374	24	6.9	24	72	21	134	44	30	0	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61606298--61606372	19	4.1	18	68	21	66	44	36	0	20	1.52
61609247--61609591	123	2.8	124	87	1	514	31	24	15	28	1.95
61610494--61610532	20	2.0	20	89	0	60	33	17	20	28	1.96
61614456--61614488	16	2.1	16	94	0	57	21	12	15	51	1.75
61615919--61615985	30	2.3	28	87	5	98	52	0	7	40	1.30
61616019--61616064	20	2.4	19	81	3	56	54	2	2	41	1.25
61616212--61616289	31	2.5	31	79	8	79	57	5	3	33	1.39
61621344--61621382	12	3.6	12	74	25	50	53	10	0	35	1.35
61621339--61621431	20	4.7	20	84	12	113	58	8	0	33	1.29
61621450--61621527	10	7.5	10	70	12	59	64	1	3	30	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199