genome.fa.s18.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  109  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36312706--36312782	32	2.4	32	80	0	91	24	24	6	44	1.77
36318013--36318068	25	2.2	25	83	0	67	35	16	12	35	1.86
36318021--36318073	25	2.1	25	92	0	88	32	16	13	37	1.88
36318845--36319016	73	2.4	72	88	1	245	25	23	27	23	2.00
36318916--36319453	114	4.7	114	90	0	788	25	21	27	26	1.99
36320128--36320232	28	3.8	27	72	14	79	28	0	37	34	1.58
36320850--36321041	91	2.0	92	83	8	235	47	12	10	28	1.75
36320947--36321300	106	3.3	107	87	3	473	48	12	11	28	1.75
36323679--36323778	13	7.6	13	68	10	60	42	10	5	43	1.60
36323703--36323786	26	3.2	26	71	15	91	44	10	4	40	1.60
36323818--36323861	19	2.4	19	82	14	56	47	4	2	45	1.35
36325737--36325780	22	2.0	22	90	0	70	45	27	15	11	1.81
36326710--36326752	21	2.1	20	91	4	68	48	39	0	11	1.40
36326800--36326844	20	2.2	20	92	4	72	15	0	37	46	1.46
36326800--36326847	14	3.5	14	77	2	53	16	0	39	43	1.48
36327354--36327413	3	20.0	3	100	0	120	66	0	0	33	0.92
36327464--36327657	98	2.0	97	94	1	343	36	10	19	32	1.87
36330023--36330058	18	2.0	18	94	0	63	30	0	25	44	1.54
36330023--36330059	17	2.1	18	90	5	58	32	0	24	43	1.55
36331475--36331704	41	5.6	41	88	1	327	20	29	15	34	1.94
36331475--36331700	81	2.8	82	87	2	321	20	29	15	34	1.94
36331634--36331701	21	3.3	21	67	19	61	19	35	16	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36331475--36331698	122	1.8	122	90	3	362	20	29	15	33	1.94
36339259--36339287	12	2.5	12	94	5	51	37	0	20	41	1.53
36343496--36343555	3	20.0	3	75	0	57	61	5	1	31	1.27
36345140--36345594	219	2.1	219	89	1	689	28	20	18	33	1.96
36365232--36365278	23	2.1	23	84	7	62	51	12	4	31	1.59
36370610--36370671	16	3.7	16	89	6	79	24	11	3	61	1.44
36371725--36371784	23	2.6	23	100	0	120	51	10	6	31	1.61
36379571--36379850	82	3.4	80	82	5	328	16	23	22	37	1.94
36379572--36379851	41	6.8	41	75	6	210	17	23	22	37	1.94
36384742--36384782	13	2.8	15	85	14	59	46	19	0	34	1.50
36384861--36384914	22	2.3	22	87	9	72	48	11	0	40	1.39
36384871--36384921	22	2.4	22	90	3	86	49	9	0	41	1.36
36384846--36384955	56	2.0	56	98	0	211	47	10	0	40	1.45
36384981--36385111	9	15.9	9	69	17	70	44	16	3	35	1.64
36384973--36385098	25	5.2	25	71	9	91	46	15	2	34	1.59
36384987--36385106	16	7.9	16	66	19	78	45	16	2	35	1.61
36390258--36390291	13	2.7	13	95	4	61	64	0	17	17	1.29
36390547--36390717	66	2.6	65	83	4	200	40	19	26	12	1.88
36390688--36390759	21	3.4	21	78	0	63	34	15	41	8	1.77
36390746--36390798	21	2.5	21	90	0	79	35	11	47	5	1.63
36391103--36391453	43	8.1	43	73	5	251	23	19	29	27	1.98
36391122--36391374	87	2.9	86	86	2	337	22	17	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36391596--36391638	22	2.0	22	85	0	59	41	23	20	13	1.88
36393694--36393766	29	2.4	29	81	4	83	32	9	9	47	1.68
36398360--36398411	27	1.9	27	96	0	95	40	11	32	15	1.83
36404883--36404949	34	1.9	35	87	3	100	31	8	14	44	1.76
36404898--36404937	20	2.0	20	90	0	62	27	10	12	50	1.72
36404883--36404953	14	4.5	15	71	20	56	29	9	16	43	1.80
36405024--36405100	20	3.8	20	73	13	86	33	3	3	58	1.35
36405034--36405124	40	2.3	40	81	7	96	39	3	4	52	1.38
36405116--36405151	18	2.0	18	88	0	54	61	8	0	30	1.26
36406023--36406052	14	2.1	14	93	0	51	40	20	10	30	1.85
36410315--36410358	22	2.0	23	86	4	63	63	2	2	31	1.19
36423592--36423643	24	2.2	24	89	0	77	50	9	3	36	1.54
36426232--36426416	79	2.3	82	84	7	238	25	27	22	24	2.00
36426213--36426416	40	5.1	40	82	8	238	25	27	22	25	2.00
36427843--36427958	56	2.1	56	98	0	223	23	23	8	44	1.80
36434379--36434563	79	2.3	82	84	7	238	25	27	22	24	2.00
36434360--36434563	40	5.1	40	82	8	238	25	27	22	25	2.00
36435988--36436107	56	2.1	56	98	0	231	22	23	9	45	1.81
36439555--36439606	24	2.2	24	89	0	77	50	9	3	36	1.54
36442135--36442210	39	1.9	39	97	0	143	35	15	5	43	1.70
36443820--36443901	38	2.2	38	93	0	137	40	13	17	29	1.87
36445561--36445588	13	2.2	13	100	0	56	28	0	10	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36450566--36450629	20	3.2	20	75	0	74	35	17	32	14	1.89
36450536--36450625	40	2.2	40	80	7	103	35	18	33	12	1.88
36455228--36455273	15	3.0	16	68	12	51	17	32	26	23	1.97
36455207--36455273	30	2.2	30	89	0	98	20	34	23	20	1.97
36465170--36465242	7	10.4	7	76	5	67	32	15	0	52	1.43
36465168--36465243	28	2.7	28	80	8	91	32	15	0	51	1.44
36465170--36465242	21	3.5	21	78	0	74	32	15	0	52	1.43
36465238--36465271	7	4.9	7	100	0	68	29	41	0	29	1.57
36465780--36465805	7	3.7	7	100	0	52	30	30	0	38	1.58
36471055--36471119	25	2.6	25	82	0	76	32	16	27	23	1.96
36471110--36471190	24	3.4	24	81	3	101	34	22	28	14	1.94
36471147--36471372	25	9.2	24	70	14	95	35	22	24	16	1.95
36474004--36474058	28	1.9	30	92	7	96	49	12	12	25	1.76
36474003--36474066	28	2.3	27	84	10	83	50	12	12	25	1.75
36474004--36474066	30	2.2	28	88	5	90	50	12	12	23	1.75
36474444--36474617	10	17.6	10	67	15	76	62	3	2	31	1.26
36474438--36474482	22	2.0	22	82	0	54	64	2	0	33	1.06
36474445--36474557	49	2.3	49	82	10	124	61	3	2	31	1.26
36475023--36475186	9	17.6	9	72	14	102	31	1	5	60	1.30
36475035--36475141	10	11.2	10	69	22	61	33	0	3	61	1.20
36475023--36475076	19	2.8	20	81	10	60	31	0	7	61	1.24
36475033--36475183	37	4.1	36	73	18	114	31	1	5	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36475348--36475540	19	10.3	18	72	17	108	32	0	5	62	1.21
36475339--36475540	9	21.8	9	74	14	137	31	0	4	62	1.23
36475339--36475540	47	4.3	47	73	17	147	31	0	4	62	1.23
36475813--36475858	24	1.9	24	90	0	74	69	2	0	28	1.00
36475965--36475999	15	2.2	16	90	5	54	31	0	0	68	0.90
36475907--36476000	20	5.2	17	69	21	66	34	2	2	61	1.20
36480952--36481007	29	1.9	30	85	3	78	39	10	8	41	1.71
36481848--36481889	22	1.9	22	85	0	57	71	2	2	23	1.10
36484907--36484950	20	2.2	20	88	8	63	18	18	4	59	1.55
36486885--36487110	40	5.7	40	90	4	280	26	26	21	25	2.00
36490337--36490558	122	1.8	122	82	1	284	32	22	14	30	1.94
36493993--36494439	95	4.7	95	80	2	441	32	17	12	37	1.87
36493993--36494432	190	2.3	189	83	2	490	32	17	12	37	1.87
36506634--36506660	4	6.8	4	100	0	54	77	0	0	22	0.76
36508263--36508300	13	2.7	14	84	12	51	15	0	7	76	1.01
36508661--36508786	44	2.9	44	85	4	139	31	22	17	28	1.96
36508762--36508914	41	3.5	41	72	17	146	33	16	17	32	1.93
36508762--36509066	95	3.3	92	87	4	411	31	17	17	33	1.93
36508885--36509201	51	6.7	50	70	14	181	31	19	16	33	1.93
36508981--36509242	137	1.9	137	89	1	409	30	21	16	32	1.95
36509362--36509528	44	3.6	44	71	17	156	28	22	20	28	1.99
36509357--36509564	98	2.1	98	93	3	357	27	21	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36508975--36509528	143	3.9	141	80	6	545	28	21	18	31	1.97
36509226--36509680	241	1.9	241	88	0	685	28	22	19	29	1.98
36509357--36509627	98	2.8	98	86	3	341	28	21	19	29	1.98
36516195--36516306	41	2.7	41	85	0	152	29	19	19	31	1.97
36525948--36526001	12	4.7	12	75	15	51	40	1	0	57	1.09
36526426--36526491	4	16.0	4	73	17	55	3	24	0	72	0.98
36526426--36526501	10	8.4	9	76	16	61	3	22	0	73	0.99
36526437--36526491	22	2.8	18	75	21	56	3	23	0	72	1.00
36526973--36527016	13	3.1	14	78	15	54	54	0	0	45	0.99
36526979--36527015	16	2.3	16	86	13	58	59	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199