genome.fa.s18.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  25  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10285930--10285992	26	2.3	28	89	8	94	52	0	7	39	1.31
10285930--10285994	29	2.4	26	89	7	94	50	0	9	40	1.34
10293284--10293373	46	2.0	46	93	0	153	37	15	13	33	1.86
10293668--10293746	30	2.5	32	78	12	83	46	5	6	41	1.51
10309868--10309911	23	1.9	23	90	0	70	56	6	6	29	1.51
10310542--10310639	27	3.6	27	85	0	133	10	34	31	23	1.88
10310672--10310733	16	3.7	16	79	12	70	9	9	11	69	1.37
10310654--10310733	37	2.2	35	93	4	133	10	10	11	68	1.39
10310657--10310733	19	4.1	19	81	13	97	10	10	10	68	1.39
10311175--10311199	12	2.1	12	100	0	50	36	0	0	64	0.94
10311449--10311476	7	4.0	7	100	0	56	42	0	0	57	0.99
10313811--10313916	25	4.4	24	81	5	126	37	21	23	16	1.93
10314338--10314403	33	1.9	33	81	9	78	12	25	4	57	1.53
10315019--10315084	33	2.1	31	83	11	80	56	6	0	37	1.24
10315670--10315705	14	2.6	14	95	0	63	33	19	8	38	1.82
10320438--10320661	113	2.0	113	99	0	439	43	16	5	34	1.70
10325144--10325202	24	2.5	24	77	0	64	27	55	3	13	1.54
10334672--10334700	7	4.1	7	100	0	58	86	13	0	0	0.58
10335969--10336006	20	1.9	20	88	0	58	50	0	2	47	1.15
10335967--10336012	20	2.3	20	76	0	56	50	0	2	47	1.13
10348087--10348332	120	2.0	120	96	0	447	33	24	6	35	1.80
10353017--10353084	37	1.9	37	82	11	90	55	2	2	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10354401--10354462	31	2.0	32	93	3	108	54	0	12	32	1.38
10355609--10355648	21	1.9	21	85	10	55	52	12	10	25	1.70
10356816--10356855	19	2.1	19	86	9	55	35	0	5	60	1.19
10381934--10381989	27	2.1	27	83	6	69	42	28	23	5	1.76
10391203--10391227	2	12.5	2	100	0	50	52	0	0	48	1.00
10396028--10396052	5	5.0	5	100	0	50	80	0	0	20	0.72
10396805--10397176	46	8.6	45	82	12	451	28	22	14	34	1.93
10396940--10397094	36	4.0	36	76	15	157	28	20	14	36	1.92
10396847--10397176	128	2.6	123	84	9	400	29	22	13	34	1.92
10396894--10397140	82	3.0	82	93	0	422	29	21	13	35	1.92
10410480--10410859	190	2.0	190	98	0	742	35	11	19	32	1.88
10411809--10411854	21	2.2	21	88	0	65	67	0	6	26	1.15
10427103--10427140	18	2.1	19	85	5	51	34	28	7	28	1.85
10434901--10434973	27	2.7	27	84	0	92	20	20	28	30	1.98
10435687--10435817	53	2.3	58	84	12	209	49	11	3	35	1.54
10435698--10435809	53	2.1	53	100	0	224	47	12	3	36	1.59
10435716--10435801	28	3.2	28	68	15	90	45	13	3	37	1.61
10435817--10435851	17	2.1	17	88	0	52	74	5	0	20	1.02
10442717--10442800	32	2.5	32	83	11	89	44	4	0	51	1.22
10446019--10446077	21	3.0	21	70	22	56	61	5	5	28	1.39
10458949--10459177	112	2.0	111	90	3	361	37	14	13	34	1.85
10461931--10461960	12	2.5	12	88	0	51	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10462643--10462696	21	2.6	19	78	16	54	62	1	1	33	1.16
10462810--10462852	9	4.8	9	85	5	52	72	0	2	25	0.97
10463164--10463199	18	2.0	18	94	0	63	38	8	22	30	1.83
10471122--10471182	31	2.0	31	87	6	88	49	8	6	36	1.59
10473874--10473965	46	2.0	46	87	4	132	47	13	9	29	1.74
10477866--10478235	183	2.0	183	88	0	551	25	24	18	31	1.98
10482967--10483010	2	22.0	2	100	0	88	50	0	50	0	1.00
10487410--10487478	5	13.8	5	82	17	90	40	0	0	59	0.97
10487411--10487487	25	3.1	24	83	10	102	41	0	0	58	0.98
10487410--10487487	30	2.6	30	88	10	106	41	0	0	58	0.98
10487496--10487590	40	2.3	40	89	1	145	64	8	27	0	1.22
10488298--10488354	30	1.9	30	88	0	87	42	3	22	31	1.71
10488566--10488592	13	2.1	13	100	0	54	29	0	7	62	1.22
10488692--10488933	50	4.7	50	87	4	306	26	24	28	19	1.99
10488692--10488941	100	2.4	103	88	6	373	26	24	28	20	1.99
10490532--10490656	64	2.0	64	91	0	205	20	20	25	33	1.97
10493104--10493162	25	2.5	23	81	10	73	27	25	11	35	1.91
10495371--10495440	24	2.9	24	76	6	61	42	21	18	17	1.89
10496008--10496048	21	2.0	21	85	0	55	41	21	4	31	1.74
10504237--10504301	29	2.3	29	82	12	89	60	1	7	30	1.34
10504614--10504658	24	1.9	23	82	13	56	40	0	4	55	1.20
10543083--10543162	39	2.1	39	81	9	92	56	2	2	38	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10543696--10543754	25	2.3	26	91	8	95	30	0	0	69	0.89
10543697--10543772	25	3.0	26	84	7	68	34	0	3	61	1.14
10554432--10554489	30	1.9	30	89	0	89	41	3	24	31	1.71
10554701--10554732	13	2.5	13	94	0	55	31	0	12	56	1.37
10554827--10555067	50	4.7	50	86	5	297	26	24	29	19	1.99
10554827--10555075	100	2.4	103	87	7	355	26	23	29	20	1.99
10557518--10557626	57	1.9	57	86	3	157	31	20	23	24	1.98
10557756--10557887	67	2.0	67	93	0	228	21	19	32	26	1.97
10571580--10571627	13	3.7	13	77	0	60	41	25	0	33	1.55
10584349--10584400	20	2.7	18	80	11	59	75	1	3	19	1.06
10584629--10584692	32	2.0	32	85	11	87	37	9	9	43	1.69
10585754--10585817	21	3.0	21	86	0	74	31	26	9	32	1.88
10586132--10586176	20	2.2	20	84	0	54	28	0	8	62	1.25
10589457--10589491	18	2.0	18	88	5	54	37	0	14	48	1.44
10591585--10591632	22	2.2	22	82	17	57	58	6	4	31	1.42
10598640--10598673	3	11.7	3	87	6	52	67	2	0	29	1.05
10598643--10598689	11	4.5	10	82	15	51	68	2	2	27	1.13
10609224--10609265	20	2.1	20	86	8	59	52	2	0	45	1.13
10613835--10613874	20	2.0	21	85	5	55	40	15	30	15	1.87
10616514--10616543	3	9.7	3	92	7	51	66	30	0	3	1.07
10616833--10616867	15	2.3	15	90	0	52	17	37	11	34	1.85
10621660--10621773	50	2.3	51	87	1	167	28	25	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10641586--10641626	15	2.5	17	80	11	59	65	0	0	34	0.93
10643169--10643208	20	2.0	22	85	14	59	57	2	0	40	1.12
10645882--10645916	18	2.0	17	88	5	52	54	0	0	45	0.99
10645981--10646031	14	3.6	15	80	17	56	54	1	0	43	1.11
10645868--10646276	120	3.4	120	94	1	705	49	4	2	43	1.38
10646315--10646399	39	2.2	40	95	2	154	60	11	5	22	1.53
10658482--10658521	20	2.0	21	85	5	55	57	0	5	37	1.21
10658664--10658712	24	2.1	23	84	3	62	46	4	0	48	1.20
10658732--10658795	17	3.8	17	68	13	51	46	3	1	48	1.27
10658767--10658917	60	2.5	60	81	7	189	47	3	3	45	1.40
10658823--10658861	16	2.4	17	87	12	55	48	2	2	46	1.29
10658767--10658915	61	2.5	61	84	5	189	47	4	4	44	1.40
10658879--10658912	15	2.3	15	94	0	59	47	2	0	50	1.16
10661494--10661529	18	1.9	19	88	5	56	0	27	0	72	0.85
10662754--10662825	30	2.5	30	79	4	85	59	5	8	26	1.48
10663051--10663133	39	2.1	37	82	10	94	32	4	2	60	1.31
10663122--10663163	9	4.8	9	83	11	52	35	0	0	64	0.94
10674019--10674065	20	2.2	23	78	17	57	59	0	4	36	1.17
10675784--10675823	8	4.8	8	88	11	62	87	0	0	12	0.54
10675789--10675823	18	1.9	18	100	0	70	88	0	0	11	0.51
10676447--10676476	15	2.0	15	100	0	60	33	6	0	60	1.23
10694583--10694615	2	16.5	2	93	0	57	45	3	51	0	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10701335--10701363	3	9.7	3	100	0	58	0	31	0	68	0.89
10725420--10725444	6	4.2	6	100	0	50	84	0	0	16	0.63
10725494--10725543	8	6.2	8	84	15	68	44	0	0	56	0.99
10725491--10725551	25	2.4	25	100	0	122	42	0	0	57	0.98
10725501--10725543	17	2.6	18	85	14	65	44	0	0	55	0.99
10725480--10725543	33	1.9	32	87	12	94	42	0	1	56	1.09
10725974--10726088	46	2.5	45	91	2	185	58	12	1	27	1.44
10734212--10734250	19	2.1	18	85	4	51	30	10	12	46	1.75
10734301--10734346	15	2.9	16	78	15	51	78	0	10	10	0.97
10743896--10743945	23	2.2	22	86	13	75	46	14	6	34	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199