genome.fa.s18.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  117  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38940009--38940049	19	2.0	22	86	13	61	21	9	0	68	1.18
38942661--38942718	16	3.6	15	71	15	53	3	22	1	72	1.09
38950222--38950422	63	3.2	63	81	5	201	22	22	29	24	1.99
38958021--38958126	50	2.1	50	82	6	126	25	21	32	20	1.98
38960270--38960298	14	2.1	14	100	0	58	27	0	27	44	1.54
38977060--38977093	16	2.2	15	89	5	50	55	2	0	41	1.15
38977159--38977218	30	2.0	30	87	3	86	45	11	11	31	1.77
38988954--38988988	13	2.7	13	95	0	61	40	14	2	42	1.60
39002400--39002438	18	2.2	18	90	0	60	25	20	10	43	1.83
39002470--39002535	13	5.1	12	75	14	51	30	0	27	42	1.56
39003796--39003851	25	2.3	24	78	6	58	41	7	10	41	1.67
39010861--39011292	89	4.9	88	83	3	474	33	19	19	28	1.96
39010861--39011345	134	3.6	133	86	2	618	34	19	18	27	1.96
39010861--39011475	44	13.6	44	75	11	467	33	19	19	27	1.96
39012139--39012232	47	2.0	47	87	0	134	24	26	20	28	1.99
39021897--39021964	21	3.4	20	80	6	75	57	0	1	41	1.08
39021897--39021984	19	4.4	20	80	11	74	57	1	2	38	1.18
39021933--39021983	10	5.2	10	76	11	52	56	1	3	37	1.29
39021938--39021985	9	5.1	9	80	9	60	60	2	4	33	1.27
39022173--39022244	10	7.2	10	74	12	51	33	1	1	63	1.11
39022173--39022305	9	13.7	9	68	17	70	33	1	2	62	1.17
39022222--39022304	29	2.9	28	75	12	87	33	1	2	62	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39028949--39028985	19	1.9	19	100	0	74	37	13	5	43	1.67
39030524--39030596	25	3.0	25	92	6	114	30	19	27	23	1.98
39030532--39030608	25	3.0	26	88	9	115	28	19	28	23	1.98
39036478--39036565	25	3.6	25	80	10	92	28	25	22	23	1.99
39042127--39042171	7	6.4	7	86	0	54	37	37	6	17	1.76
39056636--39056685	25	2.0	25	100	0	100	60	12	0	28	1.32
39059437--39059476	21	1.9	21	89	0	62	52	12	10	25	1.70
39060506--39060543	19	2.0	20	94	5	69	18	34	10	36	1.85
39063305--39063502	36	5.5	36	86	0	279	37	28	15	19	1.92
39070203--39070429	69	3.3	69	87	1	285	18	23	25	32	1.97
39074109--39074352	40	6.1	40	89	0	355	20	29	17	31	1.96
39077379--39077407	12	2.3	13	94	5	51	17	0	6	75	1.01
39077902--39077969	35	1.9	36	96	3	129	41	2	23	32	1.69
39084714--39085009	75	3.9	75	78	3	272	38	19	17	23	1.93
39109737--39109781	23	1.9	24	86	4	65	26	51	2	20	1.59
39112921--39113115	51	3.8	51	82	3	234	23	18	29	29	1.98
39113119--39113205	45	1.9	45	92	0	147	24	16	25	34	1.95
39113280--39113352	37	1.9	37	84	13	96	42	1	23	32	1.63
39119630--39119710	29	2.8	30	75	16	80	34	1	2	61	1.17
39119641--39119704	28	2.2	28	84	13	78	32	1	3	62	1.20
39119631--39119713	38	2.2	38	80	6	98	36	1	2	60	1.18
39119640--39119717	30	2.8	29	77	11	74	35	1	2	60	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39122251--39122299	15	3.1	15	82	8	53	34	4	2	59	1.28
39124373--39124416	22	2.0	23	82	13	56	31	2	20	45	1.64
39124397--39124433	16	2.3	16	95	0	65	32	2	13	51	1.55
39126684--39126729	24	1.9	24	81	0	56	30	23	28	17	1.97
39126720--39126812	48	1.9	49	84	6	127	37	18	25	18	1.93
39126720--39126799	25	3.3	24	74	13	74	35	16	27	21	1.94
39126779--39126847	26	2.7	26	73	8	77	40	21	20	17	1.91
39130984--39131051	33	2.1	33	83	5	84	33	16	7	42	1.76
39133038--39133062	9	2.8	9	100	0	50	60	0	8	32	1.26
39133480--39133549	36	1.9	35	83	11	88	38	2	4	54	1.35
39133480--39133604	48	2.6	48	84	3	144	40	3	3	52	1.33
39143820--39143879	24	2.5	24	84	10	77	16	28	23	31	1.96
39147267--39147297	9	3.6	9	91	8	55	12	0	0	87	0.55
39147462--39147519	21	3.0	20	80	9	66	62	3	3	31	1.29
39147456--39147536	20	4.2	19	76	10	74	64	2	4	28	1.27
39147761--39147827	20	3.3	20	71	8	64	34	1	4	59	1.26
39147752--39147845	10	9.7	10	70	14	54	30	2	3	63	1.21
39147782--39147838	30	1.9	29	85	3	78	31	1	1	64	1.13
39147747--39147846	40	2.6	39	86	7	143	30	3	3	64	1.24
39147851--39147897	20	2.3	20	79	13	60	44	2	0	53	1.12
39148873--39148994	51	2.4	51	86	2	174	30	23	1	44	1.63
39149769--39149796	14	2.0	14	100	0	56	21	21	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39150119--39150150	7	4.6	7	100	0	64	28	0	12	59	1.34
39150800--39150839	18	2.2	18	100	0	80	20	30	5	45	1.72
39151264--39151311	25	1.9	25	87	8	71	43	0	18	37	1.51
39151272--39151733	71	6.5	71	96	0	847	38	0	12	48	1.43
39151272--39151733	141	3.3	142	96	0	847	38	0	12	48	1.43
39151555--39151662	25	4.5	25	67	15	75	40	0	12	46	1.42
39151731--39151910	23	7.8	23	91	0	297	43	22	6	27	1.78
39155162--39155520	122	2.9	123	92	2	589	33	21	16	29	1.95
39161938--39161977	20	2.0	20	85	0	53	42	15	22	20	1.88
39164790--39165391	114	5.3	114	89	2	879	25	21	26	26	2.00
39165639--39165687	14	3.4	14	91	2	71	26	0	38	34	1.57
39165936--39165976	14	2.9	14	88	3	55	29	2	34	34	1.71
39165965--39166051	35	2.4	36	82	3	104	26	1	36	35	1.64
39166485--39166700	106	2.0	108	87	5	314	50	11	11	25	1.72
39166593--39166831	131	1.8	129	87	5	356	49	11	12	26	1.74
39166722--39167155	107	4.0	107	82	8	549	51	10	10	27	1.69
39166472--39167156	237	3.0	233	92	4	1121	50	10	11	27	1.72
39166724--39167178	218	2.1	221	93	2	776	49	10	10	28	1.71
39169867--39170153	142	2.0	142	97	0	547	33	14	15	36	1.88
39170728--39170962	129	1.8	128	86	2	337	26	17	28	27	1.97
39170728--39170962	43	5.5	43	87	0	283	26	17	28	27	1.97
39172718--39172789	28	2.6	28	90	0	108	30	12	27	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39175567--39175651	22	4.0	22	72	14	70	34	4	3	57	1.37
39178633--39178723	42	2.2	42	84	4	112	34	3	0	62	1.11
39181799--39182022	104	2.2	105	86	4	321	20	29	23	26	1.99
39183994--39184036	10	4.3	10	84	0	50	48	11	32	6	1.66
39193516--39193671	41	3.8	41	89	6	235	28	20	22	28	1.98
39193885--39193981	33	2.8	33	84	7	106	29	10	22	37	1.87
39201119--39201274	41	3.8	41	89	6	235	28	20	22	28	1.98
39201489--39201586	33	2.9	33	84	7	108	30	10	22	36	1.87
39211850--39212208	143	2.5	142	83	1	448	29	20	20	29	1.97
39212751--39212788	19	2.0	20	89	5	60	50	42	0	7	1.31
39214170--39214226	20	2.8	19	84	5	60	19	3	12	64	1.40
39214994--39215033	19	2.2	18	86	4	53	40	2	0	57	1.12
39215802--39215850	19	2.5	20	80	9	57	53	0	2	44	1.12
39218962--39219013	21	2.5	21	82	17	65	57	1	0	40	1.10
39240350--39240653	140	2.2	140	90	2	493	30	21	21	26	1.98
39240926--39240978	23	2.4	23	84	9	67	37	1	1	58	1.20
39241466--39241505	20	2.0	20	90	0	62	27	10	12	50	1.72
39241451--39241517	34	1.9	35	90	3	109	32	7	11	47	1.68
39242980--39243020	20	2.0	20	85	4	55	51	2	2	43	1.28
39248001--39248043	22	2.0	22	81	9	52	55	13	4	25	1.58
39249711--39249760	19	2.7	18	84	9	73	60	0	0	40	0.97
39250876--39250924	25	2.0	25	84	8	64	44	2	4	48	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39259524--39259575	20	2.6	19	75	6	59	19	7	3	69	1.29
39263405--39263668	40	6.7	39	82	10	245	25	21	28	25	1.99
39263405--39263668	119	2.2	119	82	7	315	25	21	28	25	1.99
39263458--39263701	79	3.1	80	83	6	223	26	21	28	24	1.99
39263485--39263701	119	1.8	118	83	4	285	25	21	28	24	1.99
39272381--39272486	33	3.2	33	80	0	122	31	16	24	28	1.96
39275876--39275992	62	1.9	60	82	5	146	48	3	5	41	1.44
39277688--39277718	16	1.9	16	100	0	62	74	6	6	12	1.21
39281945--39281988	23	1.9	23	95	0	79	13	27	34	25	1.93
39294153--39294274	23	5.3	23	86	3	165	29	24	20	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199