genome.fa.s18.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  144  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47880266--47880313	24	2.0	25	83	4	62	37	18	14	29	1.91
47881733--47881936	79	2.6	79	84	4	239	37	10	17	34	1.84
47881767--47881936	79	2.1	80	89	1	261	37	8	17	37	1.81
47881870--47882036	89	1.9	86	82	6	210	38	11	15	33	1.84
47882094--47882124	16	1.9	16	93	0	53	48	0	3	48	1.17
47893058--47893115	24	2.5	23	81	16	66	62	0	5	32	1.18
47893386--47893543	49	3.2	48	95	2	273	31	7	31	30	1.85
47893661--47893739	37	2.1	37	90	0	122	24	18	31	25	1.98
47895605--47895749	43	3.4	43	98	1	283	22	14	35	26	1.93
47895725--47895801	26	2.8	26	92	5	118	22	15	36	25	1.93
47895731--47895830	29	3.6	28	88	6	125	24	16	34	26	1.95
47896220--47896531	40	7.9	40	88	2	391	25	21	27	26	1.99
47896141--47896516	80	4.8	80	85	4	426	25	21	27	25	2.00
47899676--47899733	24	2.5	23	81	16	66	62	0	5	32	1.18
47900003--47900159	48	3.2	48	93	4	264	31	7	30	30	1.85
47900276--47900354	37	2.1	37	90	0	122	24	18	31	25	1.98
47902953--47903006	26	2.1	26	85	0	72	40	9	1	48	1.46
47907822--47908299	129	3.7	129	81	6	502	32	20	20	26	1.97
47907822--47908257	44	10.0	43	74	10	208	32	21	20	25	1.98
47908053--47908266	88	2.4	89	85	3	263	31	21	21	26	1.98
47908053--47908295	88	2.8	88	81	3	249	32	20	20	26	1.97
47910053--47910159	56	1.9	56	84	3	144	34	11	4	49	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47910189--47910242	26	2.1	26	85	0	72	40	9	1	48	1.46
47913629--47913658	7	4.4	7	91	8	53	13	0	36	50	1.42
47913629--47913654	13	2.0	13	100	0	52	15	0	38	46	1.46
47913618--47913679	7	8.0	8	77	13	51	14	0	33	51	1.43
47917212--47917410	100	2.0	100	91	0	326	27	11	26	35	1.90
47920144--47920351	40	5.3	40	80	7	239	27	27	20	23	1.99
47920144--47920352	80	2.7	78	89	3	305	27	27	20	23	1.99
47927691--47927800	39	2.8	41	84	12	133	29	7	22	40	1.81
47932586--47932625	21	2.0	21	85	9	57	30	15	40	15	1.87
47933904--47934145	50	4.7	50	78	4	182	26	22	27	24	2.00
47939981--47940007	9	3.0	9	100	0	54	33	11	22	33	1.89
47944494--47944596	35	3.0	35	78	4	120	38	31	11	18	1.87
47950756--47950794	19	2.2	17	86	13	53	51	5	20	23	1.67
47951086--47951121	18	1.9	19	88	5	56	47	11	2	38	1.54
47958113--47958149	16	2.3	16	86	13	58	40	10	8	40	1.70
47958448--47958536	46	1.9	46	95	4	162	37	13	6	42	1.71
47960222--47960378	64	2.5	64	82	0	179	34	26	8	30	1.86
47962680--47962893	48	4.5	48	90	1	326	22	27	21	27	1.99
47968528--47968565	20	1.9	20	84	10	51	57	10	5	26	1.53
47976422--47976538	62	1.9	59	84	5	153	50	3	4	41	1.38
47980470--47980503	5	6.8	5	100	0	68	17	0	0	82	0.67
47981658--47981723	27	2.4	27	84	0	96	33	18	15	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47982085--47982109	12	2.1	12	100	0	50	32	24	16	28	1.96
47986711--47986855	50	2.9	50	81	1	175	22	26	22	28	1.99
47989125--47989176	25	2.0	26	85	3	70	40	11	7	40	1.70
47992605--47992661	15	3.6	15	72	11	51	50	1	3	43	1.29
48008122--48008183	29	2.1	29	85	11	83	29	14	20	35	1.93
48008262--48008371	29	3.8	29	79	4	105	28	14	22	34	1.94
48008267--48008344	28	2.7	29	84	4	104	26	16	24	32	1.96
48010105--48010144	19	2.1	19	90	9	64	27	10	10	52	1.66
48010105--48010288	91	2.0	91	98	0	359	26	10	14	49	1.75
48018141--48018236	31	3.1	31	87	3	138	44	14	10	30	1.79
48023752--48023845	35	2.7	35	93	3	154	2	14	10	72	1.21
48024288--48024383	31	3.1	31	92	3	156	45	13	9	31	1.75
48025363--48025418	20	2.9	19	78	17	55	23	32	0	44	1.53
48026555--48026683	47	2.7	47	85	1	168	26	23	16	34	1.95
48026655--48026909	91	2.8	92	82	4	320	29	21	14	34	1.93
48026707--48026858	47	3.3	47	66	9	123	28	21	14	35	1.93
48029084--48029179	31	3.1	31	93	3	165	45	12	9	32	1.74
48032500--48032621	46	2.8	45	86	10	173	10	13	10	64	1.49
48032500--48032620	42	2.7	46	88	8	180	9	14	10	65	1.48
48033139--48033234	31	3.1	31	95	3	174	45	13	9	31	1.75
48035647--48035710	10	6.9	10	70	25	52	34	3	1	60	1.22
48035641--48035717	18	4.3	17	73	16	66	31	2	1	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48035641--48035717	9	8.6	9	74	8	59	31	2	1	64	1.15
48054250--48054397	76	2.0	75	84	1	197	51	16	4	27	1.63
48055498--48055549	18	2.8	18	85	2	68	75	1	0	23	0.91
48055638--48055705	33	2.1	33	97	0	127	25	29	27	17	1.97
48055823--48055847	9	2.8	9	100	0	50	88	0	0	12	0.53
48062756--48062791	9	4.1	9	85	7	56	47	13	11	27	1.77
48062756--48062791	17	2.1	17	89	5	54	47	13	11	27	1.77
48063005--48063064	30	2.0	31	83	3	77	21	40	0	38	1.54
48063158--48063202	19	2.6	16	83	16	54	31	28	0	40	1.57
48063569--48063630	29	2.1	28	82	11	72	56	0	16	27	1.40
48064719--48064810	46	2.0	46	100	0	184	21	26	8	43	1.81
48067034--48067230	50	3.8	50	78	4	187	23	27	20	28	1.99
48080473--48080530	9	6.4	9	85	0	80	27	10	20	41	1.85
48080468--48080539	27	2.6	27	85	10	101	27	9	19	43	1.82
48080468--48080539	18	3.9	18	73	8	56	27	9	19	43	1.82
48082307--48082338	10	2.8	12	86	13	50	9	28	0	62	1.26
48086600--48086664	22	3.0	22	72	0	58	46	16	18	18	1.85
48086671--48086791	32	3.8	32	86	4	172	38	19	19	23	1.93
48086778--48086835	26	2.4	22	75	22	62	39	29	17	13	1.88
48086785--48086840	26	2.2	26	93	0	94	35	30	17	16	1.92
48086785--48086850	26	2.5	26	87	4	80	36	27	18	18	1.94
48086838--48086902	27	2.5	26	80	14	80	32	23	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48086966--48087099	24	5.6	24	83	0	160	44	20	7	27	1.79
48086966--48087099	72	1.9	72	83	0	178	44	20	7	27	1.79
48087117--48087342	27	8.5	27	82	2	278	24	23	19	31	1.98
48087118--48087369	54	4.7	54	84	2	285	24	23	19	32	1.97
48087092--48087309	105	2.1	106	78	6	226	27	22	19	30	1.98
48087118--48087373	27	9.6	27	76	9	161	24	23	19	32	1.97
48087328--48087393	27	2.4	27	89	0	96	24	21	13	40	1.89
48095963--48096011	26	1.9	26	87	4	73	34	8	30	26	1.86
48100204--48100254	17	3.0	17	94	0	84	39	21	11	27	1.88
48100211--48100262	17	3.1	17	94	0	86	40	21	11	26	1.87
48106531--48106595	31	2.1	31	94	0	112	20	21	33	24	1.97
48113902--48114056	78	2.0	79	82	6	190	25	21	27	24	1.99
48113903--48114086	40	4.6	40	80	9	189	25	22	28	23	2.00
48119096--48119279	79	2.3	81	81	8	209	25	23	27	24	2.00
48119096--48119279	40	4.7	40	82	7	207	25	23	27	24	2.00
48121286--48121326	20	2.0	20	85	0	55	36	12	24	26	1.91
48129559--48129592	17	2.0	17	100	0	68	41	23	11	23	1.87
48129560--48129600	17	2.4	17	91	0	64	39	19	12	29	1.88
48137470--48137564	46	2.1	46	97	0	181	33	2	22	42	1.65
48137475--48137556	22	3.6	22	69	18	69	36	2	23	37	1.68
48149115--48149202	44	2.0	43	89	4	133	27	10	11	51	1.70
48150830--48150930	20	4.8	21	72	7	71	50	14	12	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48150830--48150910	22	3.8	22	70	8	69	49	13	14	22	1.78
48158481--48158565	30	2.8	30	85	5	118	20	2	4	72	1.13
48167289--48167328	22	1.9	22	90	10	66	25	10	15	50	1.74
48171864--48171906	20	2.2	20	100	0	86	16	30	4	48	1.66
48176477--48176627	28	5.4	28	94	1	241	27	11	27	33	1.92
48181006--48181383	47	7.9	47	94	2	639	31	8	29	29	1.87
48181006--48181442	145	3.0	143	91	4	673	31	8	30	29	1.87
48181006--48181437	49	8.9	49	91	4	648	31	8	30	29	1.87
48181561--48181639	37	2.1	37	90	0	122	24	18	31	25	1.98
48182147--48182241	27	3.4	28	89	2	129	26	12	28	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199