genome.fa.s18.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  135  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45046984--45047214	115	2.0	115	84	1	302	29	17	20	32	1.96
45052555--45052949	47	8.4	47	93	0	646	32	9	29	28	1.88
45052703--45052778	24	3.2	24	62	23	61	30	11	30	27	1.92
45053072--45053146	37	2.0	37	87	5	107	21	21	30	26	1.98
45056481--45056507	13	2.1	13	100	0	54	29	7	29	33	1.85
45062589--45062619	13	2.4	13	100	0	62	48	16	12	22	1.80
45069170--45069235	22	2.9	23	80	13	91	9	43	30	16	1.79
45069374--45069821	41	10.8	40	71	19	178	16	29	33	20	1.95
45077412--45077526	42	2.7	43	80	6	144	16	32	32	19	1.94
45077400--45077526	43	3.0	42	80	4	148	15	32	33	18	1.93
45077994--45078161	42	4.0	42	86	5	212	19	28	33	19	1.96
45077997--45078161	85	1.9	86	83	3	217	19	28	32	19	1.96
45083104--45083255	42	3.6	42	86	2	171	18	32	32	17	1.94
45083726--45083868	43	3.4	42	78	6	126	18	30	30	20	1.97
45083730--45083894	42	3.9	43	78	8	151	20	28	30	20	1.97
45083966--45083996	15	2.1	15	100	0	62	16	25	32	25	1.96
45095674--45095816	42	3.4	41	85	5	189	17	32	33	16	1.93
45096285--45096453	42	4.0	41	80	6	167	18	28	32	19	1.96
45101392--45101465	24	3.1	24	82	3	87	10	37	31	20	1.87
45101415--45101469	23	2.3	24	84	6	76	10	38	32	18	1.85
45101566--45102304	42	17.4	42	85	3	917	15	28	35	20	1.93
45101566--45102304	85	8.7	85	86	3	952	15	28	35	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45101567--45102304	212	3.5	211	86	4	993	15	28	36	20	1.93
45101608--45102281	254	2.6	254	89	2	1005	15	28	36	19	1.93
45109643--45109794	42	3.6	42	81	6	173	20	31	29	18	1.96
45115565--45115637	24	3.1	24	75	11	78	16	41	26	16	1.89
45115741--45116536	42	18.7	42	82	5	866	15	27	36	21	1.93
45115740--45116536	85	9.4	84	82	4	906	15	26	36	21	1.93
45115737--45116536	212	3.8	211	84	4	1002	15	27	36	21	1.93
45129766--45129856	40	2.3	39	87	7	123	27	28	20	23	1.99
45133392--45133520	43	3.0	42	76	13	136	16	31	32	19	1.94
45134082--45134671	85	6.9	85	78	6	568	21	34	26	17	1.96
45134074--45134671	42	14.1	41	71	12	316	21	34	26	17	1.95
45134074--45134671	255	2.3	255	83	4	733	21	34	26	17	1.95
45146647--45146691	23	2.0	23	91	4	74	35	4	13	46	1.63
45148890--45148946	30	1.9	30	85	3	80	42	5	21	31	1.75
45149283--45149526	50	4.9	50	89	2	355	25	21	31	21	1.98
45156870--45157001	50	2.6	51	87	1	185	24	24	31	20	1.98
45157167--45157239	36	2.0	36	97	0	137	43	10	23	21	1.84
45158257--45160385	710	3.0	710	99	0	4159	24	24	18	32	1.97
45160373--45160681	127	2.4	127	86	1	413	24	32	25	17	1.97
45160377--45160709	42	7.9	42	75	6	314	23	32	25	18	1.97
45161476--45161645	50	3.3	50	82	5	196	28	23	27	21	1.99
45161634--45161798	49	3.3	49	69	11	147	35	18	20	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45161587--45161807	99	2.2	99	92	0	370	33	20	22	23	1.97
45168697--45168883	50	3.6	50	81	4	194	27	21	29	21	1.98
45173640--45173724	27	3.2	27	67	18	79	28	28	9	34	1.88
45173626--45173782	52	3.0	52	97	0	287	30	26	9	33	1.88
45173667--45173749	25	3.2	25	64	18	62	30	27	8	33	1.86
45174988--45175185	50	3.8	50	81	4	180	27	19	27	25	1.99
45175433--45175471	12	3.2	12	85	0	51	51	5	23	20	1.67
45178043--45178128	19	4.4	19	75	12	77	66	0	33	0	0.92
45178051--45178198	44	3.5	44	80	11	141	68	0	29	1	0.97
45178052--45178194	10	14.3	10	68	17	66	69	0	28	1	0.96
45178552--45179103	157	3.5	156	73	13	491	52	7	9	30	1.61
45178545--45179317	319	2.4	315	90	2	1165	50	8	10	30	1.66
45178720--45179228	160	3.2	155	72	15	491	51	7	10	31	1.63
45181432--45181458	11	2.5	11	100	0	54	37	7	14	40	1.74
45183712--45183752	18	2.3	18	91	0	64	17	48	2	31	1.60
45186307--45186351	20	2.2	20	84	7	56	26	11	15	46	1.79
45193312--45193362	26	2.0	25	88	3	75	23	5	3	66	1.30
45202952--45203175	40	5.7	40	86	6	296	24	22	27	25	2.00
45202952--45203175	78	2.8	80	84	8	296	24	22	27	25	2.00
45210994--45211218	40	5.7	40	86	5	296	24	22	28	25	2.00
45210994--45211251	119	2.2	119	81	6	283	25	21	27	24	1.99
45217088--45217267	50	3.6	50	72	5	159	28	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45216661--45217257	267	2.2	266	88	1	867	28	21	25	25	1.99
45217146--45217300	49	3.1	49	74	3	168	30	19	21	27	1.98
45217094--45217399	99	3.1	99	87	3	420	30	20	21	26	1.98
45217452--45217606	44	3.5	44	81	7	147	29	18	23	28	1.98
45217623--45217746	45	2.6	45	81	6	131	27	20	25	26	1.99
45219060--45219098	18	2.1	18	85	4	51	30	0	7	61	1.24
45219102--45219142	19	2.1	19	86	13	57	24	4	7	63	1.40
45219657--45219707	26	2.0	25	88	3	75	23	5	3	66	1.30
45221619--45221663	20	2.2	20	88	0	63	28	13	13	44	1.81
45222611--45222673	23	2.7	23	75	7	65	39	33	3	23	1.71
45226127--45226169	21	2.0	22	86	4	61	32	4	6	55	1.47
45238380--45238416	13	2.8	13	87	0	56	37	24	5	32	1.78
45238752--45238776	12	2.1	12	100	0	50	52	8	0	40	1.31
45246916--45247035	59	2.0	59	100	0	240	23	10	15	51	1.72
45252517--45252594	25	3.2	25	75	14	81	52	3	1	42	1.27
45265269--45265302	13	2.6	14	86	13	54	41	5	0	52	1.25
45269771--45269880	54	2.0	54	98	1	211	40	10	10	39	1.74
45269943--45269990	21	2.3	21	88	0	69	39	4	2	54	1.32
45273971--45274006	11	3.3	11	88	11	56	63	0	0	36	0.94
45276980--45277150	73	2.3	72	77	8	168	36	19	23	20	1.95
45277774--45277822	20	2.5	20	76	6	55	32	12	2	53	1.50
45280480--45280681	98	2.1	98	84	10	263	43	2	2	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45280936--45280973	17	2.2	18	86	13	53	39	2	0	57	1.12
45283965--45284015	21	2.4	21	76	0	57	17	21	15	45	1.86
45283959--45284087	42	3.1	42	78	8	127	19	22	13	44	1.86
45286273--45286303	6	5.2	6	92	0	53	3	45	35	16	1.63
45287061--45287102	21	2.0	21	90	0	66	38	19	14	28	1.90
45287897--45287927	15	2.1	15	94	5	55	67	0	12	19	1.22
45288807--45288894	25	3.5	25	75	6	88	22	25	19	32	1.97
45289003--45289098	50	1.9	51	80	6	115	22	23	20	32	1.98
45298993--45299129	40	3.4	40	82	3	159	44	27	16	11	1.82
45313701--45313735	16	2.1	17	89	5	54	42	0	11	45	1.40
45315233--45315273	21	2.0	21	85	9	57	48	9	14	26	1.75
45317361--45317398	12	3.3	12	82	14	53	44	0	0	55	0.99
45317355--45317408	22	2.5	22	76	11	56	40	1	3	53	1.29
45320184--45320351	27	6.2	27	82	1	149	24	24	13	37	1.92
45320171--45320340	54	3.1	54	83	3	164	27	24	13	34	1.93
45320172--45320340	81	2.1	81	81	6	191	27	24	13	34	1.92
45331607--45331669	32	2.0	31	93	3	108	12	15	19	52	1.74
45331611--45331686	32	2.4	32	82	6	93	15	11	19	52	1.73
45334465--45334880	153	2.7	153	86	5	581	41	10	4	43	1.60
45335723--45336023	42	7.2	42	85	1	381	35	24	18	20	1.95
45340220--45340275	26	2.2	25	83	3	67	44	21	16	17	1.86
45355082--45355126	20	2.2	21	88	4	65	68	6	4	20	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45357771--45358186	151	2.7	152	86	5	577	41	9	5	43	1.59
45357728--45358199	151	3.1	149	84	6	569	41	9	4	43	1.59
45358223--45358258	18	1.9	19	88	5	56	38	11	8	41	1.71
45360721--45360778	20	2.9	19	78	12	62	68	3	1	25	1.14
45360726--45360774	21	2.3	21	83	10	64	73	4	0	22	1.00
45365438--45365479	22	1.9	22	85	0	57	52	16	9	21	1.72
45367480--45367732	46	5.6	46	93	2	424	28	22	15	33	1.94
45367480--45367730	91	2.8	91	95	1	434	28	23	14	33	1.94
45367480--45367732	137	1.9	134	93	2	434	28	22	15	33	1.94
45370358--45370527	48	3.5	48	74	12	134	16	23	21	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199