genome.fa.s18.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  151  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50000933--50001005	29	2.5	29	93	0	119	32	9	13	43	1.77
50006629--50006667	20	2.0	20	90	5	62	17	17	30	33	1.94
50013729--50013940	31	6.8	31	74	0	145	21	14	40	23	1.90
50013729--50013940	93	2.3	93	79	0	235	21	14	40	23	1.90
50024513--50024553	19	2.2	19	86	0	55	31	7	14	46	1.72
50026485--50026552	28	2.4	28	83	9	86	30	26	11	30	1.92
50030640--50030772	53	2.5	53	82	2	151	39	15	18	27	1.90
50033662--50033727	29	2.3	28	84	2	78	46	16	4	31	1.67
50033756--50033831	32	2.3	33	90	4	118	43	21	3	31	1.71
50034343--50034374	11	2.9	11	90	0	55	65	0	6	28	1.16
50035202--50035358	46	3.5	45	70	24	136	45	3	3	48	1.34
50035489--50035530	15	2.7	16	82	14	52	45	0	2	52	1.13
50035480--50035521	15	2.9	15	82	10	52	47	0	0	52	1.00
50035672--50035766	45	2.1	45	88	1	138	32	27	5	34	1.79
50035747--50035814	16	4.2	16	92	0	109	36	35	0	27	1.58
50037179--50037208	2	15.0	2	100	0	60	50	0	0	50	1.00
50040693--50040751	31	1.9	31	89	0	91	22	47	16	13	1.82
50040874--50040981	40	2.7	39	83	7	130	37	17	23	22	1.94
50041047--50041338	41	7.1	41	82	3	338	22	19	27	30	1.98
50041899--50041936	14	2.7	15	84	12	53	26	2	28	42	1.69
50042452--50042494	15	2.9	15	79	6	52	20	2	30	46	1.63
50042447--50042493	22	2.2	21	84	3	58	23	2	27	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50042447--50042568	64	1.9	64	84	0	163	22	0	31	45	1.58
50042512--50042543	15	2.2	14	94	5	55	21	0	40	37	1.54
50042447--50042587	7	19.7	7	71	7	50	22	0	32	43	1.58
50043290--50043316	14	1.9	14	100	0	54	14	51	0	33	1.43
50046311--50046401	43	2.1	43	83	2	112	34	10	10	43	1.75
50046806--50047043	43	5.7	41	78	7	210	26	18	26	28	1.98
50046776--50047043	43	6.3	41	78	8	209	25	17	27	29	1.98
50046776--50047043	84	3.2	84	79	7	265	25	17	27	29	1.98
50047734--50047811	6	12.2	6	77	12	66	78	3	12	5	1.06
50047728--50047812	39	2.2	39	91	6	136	76	3	15	4	1.09
50047751--50047810	13	4.6	13	79	8	68	78	3	15	3	1.01
50049881--50049918	19	1.9	20	89	10	60	57	2	7	31	1.41
50054620--50054657	16	2.4	16	86	8	51	63	2	5	28	1.30
50054850--50054907	25	2.3	26	79	8	66	55	3	6	34	1.44
50056583--50057558	44	20.7	44	67	12	333	26	22	20	30	1.98
50056580--50057570	143	7.0	143	87	1	1346	26	22	20	30	1.98
50057903--50057948	24	1.9	24	90	0	74	26	21	15	36	1.93
50058793--50058888	48	2.0	48	89	0	147	13	21	18	45	1.84
50059836--50059878	11	4.0	11	85	14	54	0	23	0	76	0.78
50059836--50059878	16	2.7	16	96	0	77	0	23	0	76	0.78
50059835--50059878	5	8.4	5	85	9	61	0	22	0	77	0.77
50059905--50059948	18	2.5	17	78	10	52	15	0	9	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50059888--50059949	10	6.5	10	75	18	53	17	1	8	72	1.17
50065388--50065443	12	4.7	12	74	14	53	64	0	23	12	1.27
50069112--50069149	16	2.4	16	86	8	51	63	2	5	28	1.30
50069337--50069394	25	2.3	26	82	8	75	56	3	6	32	1.42
50072109--50072266	45	3.5	45	79	1	183	24	20	18	36	1.94
50077210--50077235	12	2.2	12	100	0	52	23	7	15	53	1.67
50078670--50078791	59	2.1	59	100	0	244	36	1	20	41	1.62
50082551--50082692	40	3.6	40	78	12	141	24	21	28	25	1.99
50082917--50083084	47	3.6	47	90	0	255	33	8	30	27	1.86
50092820--50092945	61	2.1	61	100	0	252	34	17	9	38	1.82
50092997--50093053	3	19.0	3	100	0	114	66	0	0	33	0.92
50093662--50093689	14	2.0	14	100	0	56	35	7	14	42	1.73
50110323--50110466	50	2.9	50	82	0	171	22	29	20	27	1.99
50117934--50118074	49	2.8	49	78	6	140	26	24	17	31	1.97
50117946--50118187	50	4.7	50	77	4	173	24	26	19	29	1.99
50119662--50119722	15	3.9	15	72	16	52	29	1	22	45	1.62
50137195--50137232	20	1.9	20	94	0	67	68	0	7	23	1.16
50139492--50139554	30	2.1	30	82	8	74	50	11	7	30	1.66
50155117--50155301	79	2.3	82	83	7	229	24	27	22	24	2.00
50155098--50155301	40	5.1	40	81	8	229	24	27	22	25	2.00
50163996--50164038	22	2.0	21	86	4	59	46	6	20	25	1.76
50212689--50212866	27	6.6	27	83	3	196	26	14	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50212689--50212866	54	3.3	55	84	4	236	26	14	29	29	1.95
50214586--50215015	141	3.0	141	93	2	702	26	13	17	41	1.87
50214586--50214973	23	16.5	23	74	9	291	27	14	16	41	1.87
50214586--50215030	71	6.3	71	88	1	626	27	13	17	41	1.87
50216222--50216330	41	2.6	41	83	1	137	34	12	19	33	1.90
50219310--50219354	22	2.1	22	83	4	56	48	2	0	48	1.13
50219717--50219848	46	2.9	46	89	0	201	53	9	0	36	1.40
50219747--50219823	21	3.5	21	66	13	55	54	11	0	33	1.37
50222315--50222430	50	2.3	50	79	5	135	29	24	24	22	1.99
50230319--50230357	20	1.9	21	89	5	62	23	28	12	35	1.91
50230747--50230772	13	2.0	13	100	0	52	46	0	7	46	1.31
50260655--50260697	6	7.2	6	79	10	52	79	2	18	0	0.85
50260655--50260689	19	1.9	19	88	11	56	80	2	17	0	0.84
50262839--50263061	44	5.1	44	65	16	147	24	23	26	26	2.00
50262791--50263105	44	7.2	44	62	17	134	26	25	24	24	2.00
50262698--50263124	88	4.9	88	92	1	660	25	24	24	25	2.00
50264754--50264830	3	25.7	3	75	15	52	25	5	3	64	1.31
50265139--50265207	22	3.1	22	75	20	72	18	4	7	69	1.29
50265148--50265207	4	15.0	4	77	10	52	20	3	6	70	1.25
50265313--50265625	111	2.8	110	88	3	461	31	15	18	34	1.92
50268654--50268680	2	13.5	2	100	0	54	0	48	0	51	1.00
50276683--50276722	12	3.4	12	82	6	55	17	5	5	72	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50276686--50276715	11	2.7	11	94	0	51	10	6	3	80	1.01
50288643--50288703	6	10.5	6	89	3	81	78	0	21	0	0.75
50288643--50288715	17	4.2	17	80	13	78	76	0	21	1	0.86
50297526--50297584	30	2.0	30	93	0	100	22	28	27	22	1.99
50298823--50298863	23	1.9	21	85	14	57	73	0	9	17	1.09
50302103--50302131	8	3.6	8	100	0	58	75	0	0	24	0.80
50305307--50305457	28	5.4	28	92	1	223	25	11	28	33	1.92
50314601--50314726	28	4.5	28	96	1	218	26	11	28	33	1.92
50319115--50319191	38	2.0	38	92	0	127	37	28	19	14	1.91
50319476--50319502	14	1.9	14	100	0	54	29	14	22	33	1.94
50321342--50321368	14	1.9	14	100	0	54	29	14	22	33	1.94
50322275--50322301	14	1.9	14	100	0	54	29	14	22	33	1.94
50323207--50323233	14	1.9	14	100	0	54	29	14	22	33	1.94
50319385--50340723	933	22.9	933	99	0	41755	27	18	15	38	1.91
50324140--50324166	14	1.9	14	100	0	54	29	14	22	33	1.94
50325073--50325099	14	1.9	14	100	0	54	29	14	22	33	1.94
50326006--50326032	14	1.9	14	100	0	54	29	14	22	33	1.94
50326939--50326965	14	1.9	14	100	0	54	29	14	22	33	1.94
50327871--50327897	14	1.9	14	100	0	54	29	14	22	33	1.94
50328804--50328830	14	1.9	14	100	0	54	29	14	22	33	1.94
50329737--50329763	14	1.9	14	100	0	54	29	14	22	33	1.94
50330670--50330696	14	1.9	14	100	0	54	29	14	22	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50331602--50331628	14	1.9	14	100	0	54	29	14	22	33	1.94
50332535--50332561	14	1.9	14	100	0	54	29	14	22	33	1.94
50333468--50333494	14	1.9	14	100	0	54	29	14	22	33	1.94
50334401--50334427	14	1.9	14	100	0	54	29	14	22	33	1.94
50335334--50335360	14	1.9	14	100	0	54	29	14	22	33	1.94
50336267--50336293	14	1.9	14	100	0	54	29	14	22	33	1.94
50337200--50337226	14	1.9	14	100	0	54	29	14	22	33	1.94
50338132--50338158	14	1.9	14	100	0	54	29	14	22	33	1.94
50339984--50340010	14	1.9	14	100	0	54	29	14	22	33	1.94
50361001--50361053	23	2.4	22	75	9	54	9	18	1	69	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199