genome.fa.s18.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  152  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50361046--50361085	18	2.2	18	86	0	53	7	25	2	65	1.32
50361090--50361152	21	3.1	20	81	4	74	9	23	1	65	1.31
50364299--50364623	165	2.0	165	91	0	533	24	30	22	22	1.99
50364699--50364734	17	2.1	17	89	0	54	19	25	30	25	1.98
50377970--50378016	22	2.3	19	85	14	58	44	2	0	53	1.12
50377972--50378013	16	2.7	15	79	20	50	45	2	0	52	1.13
50378533--50378574	21	2.0	20	82	13	50	21	47	9	21	1.79
50378683--50378736	25	2.1	26	86	10	76	33	3	0	62	1.12
50378761--50378809	24	2.0	24	100	0	98	20	12	16	51	1.76
50379651--50379689	3	13.0	3	94	0	69	69	0	30	0	0.89
50384019--50384060	20	2.2	19	87	12	59	16	21	4	57	1.58
50384522--50384561	18	2.2	18	86	0	53	22	20	12	45	1.84
50388327--50388390	23	2.8	23	87	0	83	15	17	26	40	1.89
50388329--50388400	23	3.1	23	80	4	74	15	18	26	40	1.90
50393834--50393892	30	2.0	30	100	0	118	37	18	13	30	1.90
50394706--50394778	25	2.9	25	83	0	101	32	8	17	41	1.79
50394706--50394818	25	4.5	25	82	5	79	29	12	17	40	1.86
50398201--50398236	18	2.0	18	89	10	56	55	13	11	19	1.68
50400244--50400463	40	5.6	40	82	6	234	24	27	21	25	1.99
50400244--50400463	79	2.8	77	81	6	244	24	27	21	25	1.99
50400395--50400472	40	1.9	41	82	10	97	26	28	20	24	1.99
50408199--50408417	39	5.5	39	82	4	210	25	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50408199--50408418	79	2.8	79	84	4	239	25	27	20	26	1.99
50408199--50408418	40	5.6	40	83	4	241	25	27	20	26	1.99
50417256--50417328	25	2.9	25	85	0	101	32	5	17	43	1.72
50417259--50417368	25	4.4	25	79	6	84	30	10	18	41	1.83
50422212--50422255	23	1.9	23	85	0	61	52	6	2	38	1.41
50434859--50435179	85	3.8	85	87	1	430	23	16	25	34	1.95
50434897--50435134	43	5.6	43	77	9	236	23	15	25	34	1.95
50443616--50443707	33	2.8	33	77	9	89	23	31	18	26	1.97
50443648--50443844	105	1.9	101	83	8	254	25	25	16	31	1.97
50445849--50445908	20	3.0	20	80	0	75	35	18	30	16	1.93
50448485--50448556	27	2.7	27	93	0	126	26	19	25	29	1.99
50455336--50455484	41	3.6	41	82	1	156	35	24	17	22	1.95
50459268--50459295	10	2.8	10	100	0	56	71	0	7	21	1.09
50472115--50472265	76	2.0	76	85	0	203	27	25	5	41	1.78
50476991--50477045	20	2.8	20	83	10	76	23	21	16	38	1.93
50481256--50481280	10	2.5	10	100	0	50	60	8	24	8	1.52
50483782--50483861	27	3.0	27	77	14	76	50	11	11	27	1.72
50486656--50486709	25	2.2	25	86	6	74	27	11	42	18	1.84
50487125--50487157	13	2.5	13	100	0	66	6	27	0	66	1.15
50488209--50488277	27	2.5	27	81	6	77	50	18	14	15	1.78
50489479--50489523	18	2.6	16	89	10	63	4	17	2	75	1.07
50489479--50489513	6	5.8	6	86	0	52	2	17	2	77	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50500638--50500679	22	2.1	19	86	13	57	45	0	0	54	0.99
50500638--50500676	16	2.5	15	83	8	51	46	0	0	53	1.00
50503888--50503982	27	3.5	27	82	7	104	42	21	22	14	1.89
50524243--50524276	11	3.1	11	91	0	50	23	0	5	70	1.09
50528057--50528091	15	2.3	15	100	0	70	82	5	0	11	0.82
50529120--50529225	48	2.2	47	85	9	135	59	1	24	14	1.45
50533566--50533607	18	2.4	18	84	4	59	4	19	4	71	1.22
50533559--50533612	27	2.0	26	82	3	63	3	18	5	72	1.20
50533654--50533707	24	2.2	24	83	0	63	11	24	0	64	1.25
50534628--50534652	12	2.1	12	100	0	50	16	0	8	76	1.02
50537911--50537948	17	2.3	17	86	4	51	5	18	5	71	1.25
50548905--50548929	7	3.6	7	100	0	50	40	16	12	32	1.84
50549147--50549187	20	2.0	20	90	0	64	43	21	26	7	1.79
50551151--50551227	10	7.9	9	84	13	91	22	29	14	33	1.93
50551151--50551221	20	3.5	20	85	14	110	22	29	14	33	1.93
50552544--50552590	20	2.3	20	81	0	58	29	34	12	23	1.92
50556461--50556508	21	2.4	19	80	13	51	8	20	0	70	1.12
50557576--50557620	12	3.4	13	81	12	56	15	8	4	71	1.28
50559152--50559213	10	5.9	10	74	10	52	33	32	3	30	1.74
50559152--50559214	21	3.0	21	88	2	90	33	33	3	30	1.74
50563801--50563847	20	2.3	20	81	0	58	23	12	34	29	1.92
50568026--50568093	36	1.9	35	84	3	91	32	29	14	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50572110--50572160	26	1.9	27	84	4	68	41	13	11	33	1.81
50573918--50574095	27	6.6	27	85	3	133	29	28	14	26	1.95
50573918--50574094	54	3.3	54	83	5	214	29	28	14	26	1.95
50573939--50574094	81	1.9	82	88	3	235	29	28	14	26	1.95
50579918--50580141	47	4.7	47	93	2	385	33	8	27	30	1.87
50580121--50580160	19	2.1	19	95	0	71	37	7	22	32	1.82
50580027--50580243	113	1.9	113	97	0	407	32	7	29	30	1.86
50580074--50580207	66	2.0	66	98	0	259	33	8	27	30	1.86
50579980--50580291	160	2.0	160	91	0	507	32	8	29	29	1.87
50580140--50580291	47	3.2	47	88	1	216	31	7	31	28	1.86
50582180--50582239	29	2.1	29	87	0	84	25	38	20	16	1.93
50582451--50582486	19	1.9	18	88	5	54	75	2	13	8	1.15
50584742--50584778	4	10.0	4	83	16	53	78	0	0	21	0.75
50584742--50584778	10	3.3	12	82	17	53	78	0	0	21	0.75
50588111--50588233	28	4.4	28	90	2	176	33	28	12	26	1.92
50589982--50590028	16	2.8	17	96	3	87	63	2	4	29	1.25
50592196--50592231	10	3.6	10	84	0	54	22	22	19	36	1.95
50593383--50593421	19	2.1	18	90	4	60	20	12	0	66	1.24
50604227--50604260	11	3.2	11	87	8	52	29	14	29	26	1.95
50606824--50607047	40	5.7	40	86	6	296	24	22	27	25	2.00
50606824--50607047	78	2.8	80	84	8	296	24	22	27	25	2.00
50606824--50607045	118	1.9	117	84	6	288	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50613784--50614046	40	6.6	39	85	4	287	26	27	21	24	1.99
50618018--50618242	40	5.7	40	86	5	287	24	21	28	25	1.99
50629249--50629342	46	2.0	46	93	4	163	35	22	18	24	1.96
50633493--50633582	45	2.0	45	84	4	119	33	15	13	37	1.86
50634315--50634371	20	2.8	20	75	15	64	10	28	22	38	1.87
50637062--50637368	27	11.4	27	68	15	138	43	17	14	24	1.87
50637051--50637326	54	5.1	54	79	5	272	44	17	13	23	1.85
50637052--50637353	81	3.8	80	74	11	251	43	17	14	24	1.86
50637573--50637678	26	4.1	26	82	3	126	18	19	25	35	1.95
50637573--50637678	52	2.1	51	85	1	140	18	19	25	35	1.95
50638087--50638133	19	2.5	18	82	6	58	19	0	12	68	1.21
50642947--50642998	23	2.3	22	75	21	54	9	23	1	65	1.32
50642992--50643030	18	2.2	18	85	0	51	12	23	2	61	1.43
50646078--50646521	221	2.0	221	98	0	852	26	19	23	30	1.98
50650615--50650968	27	13.1	27	85	4	394	42	18	16	22	1.89
50651163--50651269	52	2.1	52	83	0	133	20	19	23	36	1.95
50651163--50651269	26	4.1	26	79	4	117	20	19	23	36	1.95
50652822--50652962	70	2.2	63	83	14	166	39	12	24	23	1.90
50652843--50652978	70	2.0	69	95	1	245	33	12	26	27	1.92
50654198--50654264	27	2.4	30	80	16	90	76	1	10	11	1.10
50654191--50654265	29	2.5	31	75	20	88	72	1	13	13	1.20
50655116--50655147	15	2.1	16	94	5	57	71	0	21	6	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50655247--50655291	21	2.3	18	85	11	54	55	0	26	17	1.42
50657162--50657303	70	2.2	63	84	13	175	39	12	24	23	1.89
50657183--50657319	70	2.0	70	97	0	256	34	12	26	27	1.92
50662892--50662954	28	2.1	31	85	11	96	23	19	7	49	1.74
50662899--50662954	28	2.0	28	96	0	103	23	17	8	50	1.74
50669473--50669498	13	2.0	13	100	0	52	46	7	0	46	1.31
50670127--50670173	20	2.3	20	85	0	67	29	36	12	21	1.91
50676525--50676552	14	2.0	14	100	0	56	57	0	7	35	1.26
50687696--50687849	28	5.5	28	96	0	256	26	11	27	34	1.90
50687671--50687849	56	3.2	56	90	1	261	26	11	27	34	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199