genome.fa.s18.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  116  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38625922--38625982	15	4.0	15	77	12	61	11	22	1	63	1.36
38627351--38627457	26	4.1	26	83	0	115	36	21	19	22	1.95
38636807--38636874	26	2.6	26	85	0	91	33	22	19	25	1.97
38637206--38637303	29	3.4	29	83	8	112	25	36	20	17	1.94
38641005--38641135	49	2.6	49	81	4	147	25	23	18	32	1.97
38641105--38641199	50	1.9	50	89	4	147	22	29	23	25	1.99
38648762--38648791	4	7.8	4	92	7	53	76	0	0	23	0.78
38653163--38653311	39	3.8	39	83	7	162	17	23	24	34	1.96
38657756--38657794	18	2.1	19	86	13	55	20	15	15	48	1.81
38667879--38667907	13	2.1	14	93	6	51	10	6	13	68	1.37
38673121--38673160	18	2.2	18	86	4	53	12	27	0	60	1.33
38673255--38673295	18	2.3	18	86	0	55	4	12	7	75	1.16
38674218--38674269	13	4.0	13	92	7	88	23	13	0	63	1.29
38674312--38674350	10	3.7	10	93	6	60	15	0	7	76	0.99
38674310--38674363	12	4.7	12	86	9	76	12	1	9	75	1.11
38674312--38674362	22	2.3	22	93	0	84	13	1	9	74	1.15
38676467--38676560	25	3.8	24	69	16	66	26	20	23	29	1.99
38679906--38679970	27	2.4	27	85	7	80	38	21	20	20	1.94
38680103--38680299	27	7.3	26	83	7	216	27	15	18	38	1.91
38680103--38680303	54	3.7	53	85	5	251	26	15	19	38	1.91
38680114--38680301	81	2.3	81	85	1	252	27	16	17	38	1.91
38680517--38680550	17	1.9	17	88	5	50	20	44	23	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38686709--38686735	13	2.1	13	100	0	54	37	40	0	22	1.54
38688522--38688560	20	2.0	20	90	10	62	15	23	5	56	1.59
38688834--38688956	50	2.5	50	82	0	156	21	27	22	28	1.99
38691616--38691646	11	2.8	11	95	0	53	41	32	9	16	1.80
38693115--38693154	21	1.9	21	100	0	80	35	25	5	35	1.78
38706538--38706588	16	3.2	16	88	0	84	29	25	1	43	1.66
38707489--38707612	34	3.7	33	83	6	142	42	16	8	32	1.79
38707748--38707840	46	2.0	46	95	4	170	41	11	13	32	1.81
38708919--38708958	17	2.4	17	83	4	55	77	0	22	0	0.77
38711081--38711256	28	6.3	28	83	0	226	32	22	19	25	1.98
38711618--38711977	27	13.3	27	82	8	324	20	17	22	39	1.93
38711618--38711977	81	4.4	81	84	3	386	20	17	22	39	1.93
38714539--38714590	27	1.9	27	84	7	70	7	21	5	65	1.40
38715770--38715799	15	2.0	15	100	0	60	20	33	26	20	1.97
38718719--38719387	27	24.9	27	87	0	912	18	18	21	41	1.91
38728812--38728879	12	6.0	12	83	16	76	55	0	0	44	0.99
38728812--38728884	5	14.6	5	77	16	71	56	1	0	42	1.08
38731161--38731209	26	2.0	22	85	14	62	36	14	10	38	1.80
38731485--38731511	14	1.9	14	100	0	54	37	11	0	51	1.37
38734777--38735021	51	4.8	51	85	3	300	31	26	15	25	1.96
38734776--38735021	101	2.4	102	83	4	302	31	27	15	25	1.96
38737829--38738120	75	3.9	75	73	6	234	30	19	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38737829--38738120	25	11.6	25	75	5	198	30	19	19	30	1.96
38737829--38738122	50	5.9	49	75	6	236	31	19	19	30	1.96
38739188--38739252	27	2.4	27	82	7	80	38	23	21	16	1.93
38739411--38739513	27	3.8	27	86	0	152	26	15	20	37	1.92
38747542--38747578	18	2.0	19	89	5	58	51	0	43	5	1.24
38751039--38751102	25	2.6	25	80	12	69	60	0	3	35	1.12
38751068--38751106	20	2.0	20	89	0	60	61	0	7	30	1.24
38752403--38752607	32	6.4	32	75	5	173	37	22	20	20	1.95
38752403--38752607	64	3.2	64	72	8	200	37	22	20	20	1.95
38752651--38752714	27	2.4	27	84	7	78	29	21	28	20	1.98
38752782--38752836	24	2.3	24	87	6	76	47	27	7	18	1.74
38752905--38753024	26	4.5	26	83	4	150	18	20	23	37	1.94
38752905--38753095	27	7.1	27	76	4	147	19	19	21	39	1.93
38752901--38753024	53	2.3	53	92	0	203	19	20	22	37	1.94
38754019--38754078	30	2.0	30	87	6	86	46	11	6	35	1.67
38761594--38761619	12	2.2	12	100	0	52	69	0	0	30	0.89
38783356--38783428	21	3.5	21	69	9	51	16	35	23	24	1.95
38783783--38783811	15	1.9	15	100	0	58	31	0	13	55	1.39
38785094--38785272	33	5.3	34	71	9	98	30	13	25	30	1.94
38785094--38785349	101	2.6	101	85	3	331	30	14	26	28	1.95
38785227--38785304	33	2.4	32	78	6	84	32	15	24	28	1.95
38787087--38787209	35	3.5	35	86	0	174	34	33	16	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38791487--38791604	40	3.0	41	90	6	147	5	30	8	55	1.54
38791526--38791594	5	13.6	5	72	14	52	2	33	4	59	1.32
38792123--38792239	27	4.3	27	74	8	103	42	18	18	19	1.89
38792282--38792350	28	2.5	28	81	6	79	28	26	15	28	1.96
38795696--38795724	15	1.9	15	100	0	58	27	13	24	34	1.93
38798111--38798213	27	3.8	27	82	1	134	39	23	20	16	1.92
38807011--38807055	20	2.2	21	92	4	74	22	20	35	22	1.96
38814468--38814567	39	2.5	39	85	1	128	34	21	30	15	1.93
38815333--38815359	14	1.9	14	100	0	54	40	0	0	59	0.98
38818165--38818531	103	3.6	103	91	0	592	19	19	28	32	1.96
38829721--38829765	15	2.8	16	77	16	56	28	4	0	66	1.11
38842331--38842386	23	2.4	23	75	0	67	28	12	19	39	1.88
38845062--38845262	51	4.0	51	75	8	212	29	29	17	23	1.97
38845070--38845254	101	1.8	102	87	3	275	30	28	17	23	1.97
38848393--38848474	42	2.0	42	85	4	112	31	24	13	30	1.93
38851129--38851323	51	3.8	51	80	8	227	30	28	16	24	1.97
38851131--38851315	101	1.8	102	88	3	284	30	27	17	24	1.97
38860259--38860312	12	4.6	11	81	4	54	7	0	9	83	0.82
38860261--38860300	9	4.4	9	84	12	55	7	0	10	82	0.84
38860252--38860294	20	2.1	21	87	12	63	11	0	9	79	0.95
38860257--38860321	32	2.1	31	85	8	87	6	1	10	81	0.93
38860252--38860306	18	2.8	19	82	17	60	9	0	10	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38860260--38860321	20	3.0	20	76	19	56	6	1	9	82	0.91
38860872--38860953	42	2.0	42	90	0	128	32	19	8	39	1.82
38863737--38863999	40	6.6	40	87	3	316	24	20	28	26	1.99
38863776--38864034	80	3.3	80	84	3	238	25	20	28	25	1.99
38871687--38871949	40	6.6	40	87	3	316	24	20	28	26	1.99
38871726--38871984	80	3.3	80	84	3	238	25	20	28	25	1.99
38873565--38873624	25	2.4	25	86	5	77	26	20	20	33	1.97
38873576--38873628	25	2.1	25	92	0	88	26	16	20	35	1.94
38876467--38876496	16	1.9	16	93	6	53	30	0	20	50	1.49
38878831--38878931	50	2.0	51	86	1	141	24	25	18	30	1.98
38885715--38885830	61	1.9	61	83	3	153	25	24	23	27	2.00
38887463--38887498	15	2.6	14	91	8	56	52	11	0	36	1.37
38889924--38890010	45	1.9	45	95	0	156	28	14	16	40	1.88
38896510--38896651	75	1.9	75	80	8	164	29	4	6	59	1.41
38898276--38898411	68	2.0	68	95	0	245	33	20	17	27	1.95
38919268--38919630	183	2.0	182	89	2	557	41	9	15	33	1.80
38920042--38920080	21	1.9	20	89	5	60	20	15	17	46	1.84
38920933--38920967	17	2.1	17	94	0	61	17	25	28	28	1.97
38921085--38921183	42	2.3	43	81	8	105	18	25	29	27	1.98
38922670--38922718	22	2.2	22	85	0	62	20	26	20	32	1.97
38924626--38924717	25	3.7	25	79	1	96	22	26	19	31	1.98
38925978--38926018	17	2.5	16	85	14	57	26	0	12	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38927841--38927918	35	2.2	35	81	2	93	41	26	12	19	1.87
38927852--38927933	35	2.3	35	85	2	101	42	26	12	18	1.85
38931522--38931588	31	2.2	31	86	5	91	34	13	8	43	1.75
38933198--38933231	17	2.0	17	94	0	59	41	14	0	44	1.45
38933897--38933957	25	2.4	25	78	13	70	62	4	6	26	1.40
38935283--38935333	22	2.5	20	84	9	66	31	23	3	41	1.73
38935285--38935327	22	2.0	21	90	4	68	25	25	4	44	1.73
38935493--38935625	40	3.4	40	70	11	103	33	25	15	25	1.95
38936551--38936586	5	7.4	5	93	6	65	58	0	0	41	0.98
38939054--38939151	49	2.0	49	87	0	142	26	14	11	47	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199