genome.fa.s18.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  183  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58476679--58476713	18	2.0	17	88	5	52	45	0	0	54	0.99
58476910--58476946	17	2.2	17	95	4	67	37	37	0	24	1.56
58479381--58479430	26	1.9	26	91	0	82	44	0	8	48	1.32
58485246--58485529	43	6.6	43	84	2	320	30	28	16	24	1.96
58485246--58485529	129	2.2	128	84	3	356	30	28	16	24	1.96
58488314--58488427	57	2.0	57	86	3	158	27	21	14	35	1.93
58488926--58489884	149	6.4	149	89	3	1349	30	16	15	36	1.91
58488926--58489886	296	3.2	297	90	3	1419	30	16	15	36	1.90
58489899--58489927	15	1.9	15	100	0	58	31	0	0	68	0.89
58490478--58490539	14	4.4	14	91	4	90	32	46	0	20	1.51
58490478--58490539	7	8.9	7	78	0	70	32	46	0	20	1.51
58490562--58490603	14	2.9	14	82	6	57	35	35	0	28	1.58
58490558--58490604	15	3.3	15	82	8	62	40	31	0	27	1.57
58490805--58490887	7	11.6	7	78	10	60	33	44	0	21	1.53
58490805--58490859	15	3.7	15	81	11	69	32	49	0	18	1.48
58490854--58490902	14	3.4	14	88	5	71	34	40	0	24	1.55
58490861--58490905	15	3.1	15	90	3	65	35	42	0	22	1.54
58491055--58491280	73	3.1	73	88	2	323	26	26	19	28	1.98
58491180--58491487	113	2.7	113	91	1	492	25	28	21	24	1.99
58492390--58492591	101	2.0	101	98	0	386	30	21	12	36	1.90
58495871--58496119	50	4.8	50	83	4	282	20	28	23	26	1.99
58495870--58496119	100	2.4	104	86	5	337	21	28	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58496214--58496244	13	2.4	13	94	0	53	54	12	0	32	1.38
58496456--58496512	30	1.9	29	85	3	78	33	24	1	40	1.66
58502485--58502552	26	2.6	26	72	9	66	38	5	19	36	1.76
58502747--58502792	24	1.9	24	86	0	65	47	2	4	45	1.34
58502859--58502896	19	2.0	20	84	5	51	39	0	0	60	0.97
58504236--58504282	22	2.1	22	100	0	94	34	17	27	21	1.95
58504331--58504506	83	2.1	83	98	1	345	48	10	7	32	1.67
58526075--58526164	18	5.0	18	90	0	144	32	15	23	28	1.95
58530962--58531089	44	2.9	44	82	9	154	14	20	14	50	1.77
58533666--58533713	18	2.9	15	79	14	51	22	2	2	72	1.05
58533843--58533896	28	1.9	28	85	7	74	57	1	1	38	1.20
58545746--58545785	15	2.5	17	76	23	50	60	0	7	32	1.25
58554010--58554049	15	2.5	17	76	23	50	60	0	7	32	1.25
58562272--58562311	15	2.5	17	76	23	50	60	0	7	32	1.25
58570538--58570577	15	2.5	17	76	23	50	60	0	7	32	1.25
58578139--58578309	90	1.9	90	85	4	238	24	18	17	39	1.92
58579130--58579410	154	1.8	154	86	1	411	30	18	22	28	1.97
58579244--58579339	40	2.4	39	82	6	113	30	19	22	27	1.98
58579701--58579900	7	28.3	7	75	6	143	18	0	33	48	1.52
58579706--58579947	7	33.9	7	74	8	139	17	0	35	46	1.52
58580693--58580720	12	2.3	12	100	0	56	46	7	10	35	1.66
58580742--58580775	15	2.3	15	94	0	59	47	2	11	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58581004--58581139	43	3.2	43	78	13	147	31	20	18	29	1.96
58580919--58581139	86	2.6	84	79	13	220	31	17	19	31	1.95
58583272--58583314	23	1.9	23	90	4	70	27	4	2	65	1.25
58584011--58584065	24	2.3	24	75	15	60	41	7	1	49	1.41
58584572--58584604	16	2.1	16	94	0	57	48	6	12	33	1.65
58588582--58588613	13	2.4	14	85	15	50	71	0	0	28	0.86
58588588--58588618	16	2.0	15	93	6	53	70	0	0	29	0.87
58588809--58588871	29	2.2	29	91	8	103	63	11	3	22	1.41
58588809--58588887	29	2.8	27	85	12	81	62	10	3	24	1.44
58590489--58591024	129	4.0	129	79	13	520	26	23	18	31	1.97
58591020--58591247	46	5.0	45	75	15	168	29	25	17	27	1.98
58591019--58591289	94	3.0	91	79	14	240	29	25	17	26	1.97
58591041--58591289	47	5.4	45	71	19	183	30	24	17	26	1.97
58593288--58593321	6	5.5	6	86	6	50	0	14	0	85	0.60
58593326--58593382	22	2.9	21	77	17	59	10	0	14	75	1.05
58593328--58593382	18	2.7	21	83	13	71	10	0	14	74	1.07
58601242--58601294	26	2.0	28	92	7	92	16	22	11	49	1.78
58610439--58610467	14	2.1	14	100	0	58	37	13	20	27	1.91
58613004--58613046	21	2.0	23	82	17	56	53	0	0	46	1.00
58613569--58613605	3	12.3	3	100	0	74	64	0	0	35	0.94
58615245--58615303	31	1.9	30	86	3	82	35	10	6	47	1.64
58616984--58617102	60	2.0	60	84	0	157	42	3	12	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58617992--58618140	61	2.4	60	77	8	149	36	6	14	42	1.72
58620328--58620430	26	4.0	26	76	9	102	32	3	2	61	1.29
58620421--58620471	21	2.2	24	83	10	63	31	7	1	58	1.37
58620439--58620515	38	2.1	38	85	7	104	24	2	5	67	1.24
58620475--58620543	25	2.9	24	78	16	72	23	1	2	72	1.06
58620464--58620543	14	5.8	14	69	16	51	22	1	3	72	1.08
58621126--58621186	30	2.0	30	100	0	122	36	13	0	50	1.41
58624456--58624539	38	2.4	33	81	16	107	35	13	19	32	1.90
58628298--58628380	38	2.4	33	83	16	114	33	13	20	32	1.91
58631000--58631025	13	2.0	13	100	0	52	30	0	38	30	1.58
58632476--58632509	16	2.1	16	88	0	50	50	11	23	14	1.76
58634052--58634084	16	2.0	17	88	5	50	24	3	12	60	1.46
58638654--58638705	20	2.6	21	78	9	63	36	0	5	57	1.23
58640796--58640845	20	2.5	20	86	0	73	18	22	18	42	1.90
58642373--58642407	17	2.1	17	88	0	52	28	20	25	25	1.99
58646764--58646799	18	2.0	18	88	0	54	55	2	0	41	1.14
58647500--58647534	17	2.0	17	88	5	52	40	0	5	54	1.24
58649977--58650009	16	2.1	16	100	0	66	57	6	0	36	1.23
58649985--58650069	38	2.1	38	81	12	91	54	3	1	41	1.25
58662569--58662617	18	2.7	18	90	0	71	36	6	30	26	1.81
58662780--58662903	64	1.9	64	98	0	239	37	15	11	35	1.83
58677403--58677438	18	2.0	18	88	0	54	55	2	0	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58689453--58689518	32	2.1	32	97	0	123	21	12	22	43	1.85
58691185--58691241	26	2.1	27	81	15	66	47	0	5	47	1.24
58691450--58691554	52	2.0	52	96	0	192	34	17	21	26	1.95
58695016--58695378	112	3.2	113	86	5	497	25	15	13	45	1.82
58695860--58695902	22	2.0	22	85	0	59	25	9	4	60	1.47
58695873--58695907	14	2.5	14	90	0	52	25	2	5	65	1.28
58696002--58696026	13	1.9	13	100	0	50	32	0	0	68	0.90
58696056--58696097	16	2.6	17	77	7	52	26	0	4	69	1.08
58702878--58702919	22	1.9	22	90	0	66	16	9	7	66	1.42
58702878--58702930	22	2.4	22	83	0	61	15	11	5	67	1.38
58703071--58703095	13	1.9	13	100	0	50	32	0	0	68	0.90
58703126--58703167	16	2.6	17	77	7	52	26	0	4	69	1.08
58709642--58709682	3	13.7	3	94	0	73	65	2	0	31	1.05
58717369--58717411	22	2.0	22	85	0	59	62	11	4	20	1.46
58723142--58723350	72	2.9	71	77	5	222	29	16	20	33	1.95
58725673--58725763	11	8.5	11	70	21	59	37	3	0	59	1.14
58725697--58725730	17	2.0	17	94	0	59	32	0	0	67	0.91
58725665--58725751	41	2.1	41	91	4	149	37	2	0	59	1.10
58725685--58725763	23	3.1	24	77	15	63	35	3	0	60	1.15
58732179--58732252	29	2.5	29	84	4	94	27	13	13	45	1.81
58733999--58734054	21	2.6	21	77	8	60	23	1	7	67	1.24
58747824--58747869	21	2.2	21	88	0	65	2	47	19	30	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58748249--58748302	16	3.4	16	89	0	72	31	0	33	35	1.58
58748535--58748569	18	2.0	17	88	5	52	54	0	0	45	0.99
58748422--58748738	157	2.0	157	96	0	589	44	3	5	47	1.42
58748672--58748713	15	2.7	16	82	14	52	52	2	0	45	1.13
58748681--58748722	15	2.9	15	82	10	52	52	0	0	47	1.00
58748670--58748967	120	2.5	121	93	3	512	50	4	2	42	1.37
58748791--58748842	15	3.6	15	80	12	56	53	1	0	44	1.11
58749008--58749061	15	3.9	15	72	16	53	51	3	0	44	1.19
58748983--58749187	88	2.3	89	87	5	279	46	3	4	45	1.41
58750120--58750144	6	4.2	6	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199