genome.fa.s18.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  130  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43528303--43528350	23	2.1	22	85	11	62	27	4	14	54	1.59
43529975--43530003	14	2.1	14	100	0	58	34	6	0	58	1.25
43531152--43531178	13	2.1	13	100	0	54	55	14	7	22	1.64
43534668--43534717	20	2.5	20	77	6	57	14	32	20	34	1.92
43539600--43539633	16	2.2	16	89	5	52	26	2	5	64	1.30
43544787--43544814	6	4.7	6	100	0	56	0	85	0	14	0.59
43554517--43554606	39	2.2	41	88	3	130	38	1	7	52	1.38
43562194--43562235	21	2.0	21	90	0	66	40	0	19	40	1.51
43563062--43563096	18	1.9	18	88	0	52	68	0	2	28	1.04
43564104--43564200	25	3.8	24	76	9	77	22	25	21	29	1.99
43564116--43564235	24	4.9	24	74	12	86	21	25	19	33	1.97
43564181--43564320	25	5.7	25	76	8	110	20	24	22	33	1.97
43565238--43565276	13	3.0	13	84	0	51	12	23	35	28	1.91
43566605--43566631	14	1.9	14	100	0	54	14	11	14	59	1.62
43566665--43566727	30	2.1	30	93	0	108	22	4	15	57	1.57
43569283--43569322	20	2.0	20	90	0	62	60	10	5	25	1.49
43572521--43572602	24	3.4	25	77	5	87	35	19	29	15	1.93
43572420--43572602	25	7.5	24	70	10	102	33	20	26	19	1.96
43572541--43572613	24	3.0	24	70	4	67	34	19	28	17	1.95
43572978--43573019	21	2.0	21	85	0	57	42	19	0	38	1.51
43577394--43577471	31	2.6	31	78	11	85	56	14	12	16	1.68
43577453--43577589	32	4.5	31	74	17	128	52	12	13	21	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43584550--43584610	29	2.1	30	79	14	74	55	6	4	32	1.47
43585258--43585286	15	1.9	15	100	0	58	31	0	0	68	0.89
43587066--43587120	22	2.6	21	82	2	65	45	18	21	14	1.85
43587081--43587128	22	2.2	22	81	7	53	35	20	25	18	1.95
43588265--43588296	8	4.0	8	91	0	55	59	0	3	37	1.13
43588266--43588296	16	1.9	16	100	0	62	58	0	3	38	1.15
43588267--43588302	16	2.2	16	90	0	54	61	2	2	33	1.25
43590728--43590806	20	4.0	19	70	8	68	13	34	17	34	1.90
43592967--43593019	18	2.9	18	83	5	63	35	18	3	41	1.69
43595913--43595945	16	2.0	17	88	5	50	48	6	0	45	1.27
43599791--43599879	35	2.5	35	85	0	124	15	11	34	38	1.83
43604453--43604578	40	3.2	39	78	8	130	31	19	24	23	1.98
43604642--43604722	41	2.0	41	95	4	146	19	22	27	30	1.98
43604933--43605071	7	19.6	7	69	11	59	20	1	31	46	1.59
43605000--43605051	15	3.5	15	75	15	54	23	0	32	44	1.54
43605032--43605071	20	2.0	20	90	5	62	20	0	27	52	1.46
43604953--43605072	14	8.5	14	71	15	77	20	1	33	45	1.61
43605303--43605343	21	2.0	20	85	4	55	21	0	36	41	1.54
43605350--43605403	22	2.5	22	84	0	72	24	0	37	38	1.56
43605369--43605397	14	2.0	15	93	6	51	24	0	34	41	1.55
43610945--43611196	87	2.9	87	80	7	233	26	21	21	29	1.99
43611032--43611330	131	2.3	131	80	9	324	25	23	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43611035--43611286	87	2.9	90	79	8	250	25	22	21	30	1.99
43610905--43611376	218	2.2	218	94	0	829	26	22	21	30	1.99
43610995--43611324	87	3.8	87	76	7	224	24	22	23	29	1.99
43610957--43611330	44	8.6	44	73	7	280	25	22	21	30	1.99
43612577--43612609	1	33.0	1	100	0	66	0	0	0	100	0.00
43621100--43621134	1	35.0	1	94	0	61	97	2	0	0	0.19
43622563--43622801	43	5.5	42	73	8	167	29	22	21	26	1.99
43624778--43624811	17	2.0	17	94	0	59	20	8	5	64	1.43
43628254--43628306	21	2.4	21	87	6	70	37	37	0	24	1.56
43628273--43628315	14	3.0	14	82	3	50	34	41	0	23	1.55
43635593--43635724	40	3.3	40	90	3	178	26	27	21	25	1.99
43635593--43635777	79	2.3	82	83	7	229	25	27	22	24	2.00
43649495--43649541	12	3.8	12	83	5	67	55	0	4	40	1.19
43649495--43649543	25	2.0	25	95	0	89	53	0	8	38	1.31
43650860--43650901	22	2.0	22	85	4	59	38	11	7	42	1.69
43652331--43652356	13	2.0	13	100	0	52	53	30	0	15	1.42
43654463--43654494	16	2.0	16	93	0	55	59	0	15	25	1.36
43657559--43657597	20	2.0	20	85	5	53	30	2	2	64	1.21
43667306--43667368	18	3.4	18	73	4	72	50	6	3	39	1.44
43667322--43667380	19	3.2	19	70	4	66	50	8	6	33	1.59
43667306--43667380	37	2.0	37	100	0	150	49	8	5	37	1.55
43675755--43675813	25	2.4	24	77	5	64	35	5	16	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43678845--43678963	59	2.0	59	91	0	193	21	20	18	40	1.92
43680442--43680532	26	3.6	25	81	12	100	17	27	20	34	1.95
43680584--43680655	25	2.8	26	72	4	67	25	20	19	34	1.96
43694000--43694040	19	2.0	21	86	9	59	31	0	2	65	1.05
43694223--43694257	17	1.9	19	88	11	56	65	11	2	20	1.37
43694273--43694314	11	3.8	11	80	0	57	50	9	16	23	1.75
43694274--43694320	22	2.2	22	84	3	60	55	6	17	21	1.64
43702424--43702532	43	2.6	42	82	7	141	26	27	18	27	1.98
43719793--43719845	27	1.9	27	88	3	79	30	1	0	67	1.01
43719783--43719851	27	2.5	28	80	4	77	34	1	0	63	1.03
43731505--43731535	16	2.0	15	93	6	53	70	0	29	0	0.87
43732406--43732545	40	3.5	40	75	6	142	27	16	24	32	1.96
43737476--43737674	100	2.0	100	91	2	319	36	23	9	31	1.87
43743653--43743709	18	3.2	18	79	0	69	26	3	50	19	1.63
43743690--43743735	24	1.9	24	81	0	56	34	0	47	17	1.48
43755214--43755257	3	14.7	3	100	0	88	65	0	0	34	0.93
43758249--43758280	3	10.7	3	100	0	64	68	31	0	0	0.90
43767743--43767806	19	3.4	19	64	23	53	60	6	14	18	1.54
43767725--43767806	38	2.2	38	93	0	137	56	8	14	20	1.65
43768441--43768484	20	2.1	21	84	12	56	27	2	18	52	1.57
43769260--43769296	19	1.9	19	88	0	56	45	0	5	48	1.25
43770938--43770990	26	2.0	27	92	3	90	41	7	13	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43774940--43774973	16	2.1	16	89	10	52	14	17	11	55	1.68
43775170--43775221	26	2.0	26	84	0	68	42	5	13	38	1.68
43779890--43779967	29	2.7	28	84	11	104	25	15	30	28	1.96
43779920--43780246	173	1.9	174	92	0	557	30	14	23	31	1.94
43784833--43784884	26	2.0	26	92	0	86	40	7	11	40	1.70
43785700--43785751	26	2.0	26	96	0	95	42	7	13	36	1.73
43787719--43787770	26	2.0	26	96	0	95	40	9	11	38	1.74
43789514--43789556	21	2.0	21	81	0	50	58	6	0	34	1.25
43794558--43794600	21	2.0	21	82	8	52	23	20	4	51	1.66
43795642--43795734	39	2.5	37	80	7	98	27	29	22	20	1.98
43796090--43796146	3	19.0	3	85	0	78	59	5	0	35	1.20
43796802--43796827	11	2.4	11	100	0	52	0	42	7	50	1.31
43797182--43797224	21	2.0	21	81	0	50	58	6	0	34	1.25
43797805--43797856	26	2.0	26	92	7	88	38	9	13	38	1.77
43801981--43802032	26	2.0	26	88	7	79	44	7	11	36	1.70
43809071--43809170	50	2.0	50	96	0	182	32	10	26	32	1.89
43811382--43811433	26	2.0	26	92	0	86	40	9	13	36	1.77
43814552--43814604	26	2.0	26	85	0	70	41	5	9	43	1.61
43817747--43817798	26	2.0	26	92	0	86	40	9	13	36	1.77
43819490--43819541	26	2.0	26	88	0	77	38	7	11	42	1.70
43825072--43825123	26	2.0	26	92	0	86	42	7	11	38	1.70
43828462--43828686	119	1.9	120	84	6	305	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43828462--43828686	40	5.7	40	86	6	296	25	27	22	24	2.00
43836491--43836713	119	1.9	120	84	6	301	25	27	22	24	2.00
43836489--43836713	40	5.7	40	85	6	287	25	28	22	24	2.00
43840535--43840586	26	2.0	26	96	0	95	40	7	13	38	1.73
43843696--43843747	26	2.0	26	92	0	86	42	7	13	36	1.73
43844768--43844819	26	2.0	26	96	0	95	40	7	13	38	1.73
43845841--43845892	26	2.0	26	92	0	86	42	7	11	38	1.70
43847961--43848012	26	2.0	26	92	0	86	42	7	11	38	1.70
43849033--43849084	26	2.0	26	96	0	95	40	7	13	38	1.73
43851154--43851205	26	2.0	26	92	0	86	38	9	13	38	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199