genome.fa.s18.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  171  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55309332--55309405	29	2.5	29	77	4	76	28	14	10	45	1.79
55316182--55316246	28	2.4	27	82	14	80	20	20	20	40	1.92
55318171--55318230	20	3.0	20	76	9	77	38	3	3	55	1.33
55318171--55318254	40	2.1	40	84	8	109	40	2	4	52	1.35
55321430--55321470	21	2.0	21	90	0	64	29	21	29	19	1.98
55328050--55328102	24	2.2	24	90	6	81	39	7	3	49	1.49
55331320--55331393	24	3.1	24	73	7	69	24	10	9	55	1.64
55331319--55331393	25	3.1	25	69	7	64	24	10	9	56	1.63
55332397--55332464	11	5.6	12	78	14	68	35	2	0	61	1.11
55332399--55332464	26	2.6	26	92	2	107	34	3	0	62	1.11
55332399--55332464	12	5.2	12	81	15	71	34	3	0	62	1.11
55333872--55333910	16	2.4	17	82	8	53	51	0	10	38	1.36
55333943--55333978	18	2.1	16	90	10	54	61	0	5	33	1.19
55334812--55334857	24	1.9	24	81	0	56	78	10	8	2	1.05
55335428--55335480	21	2.5	21	93	0	97	39	20	3	35	1.71
55337318--55337696	165	2.3	161	90	4	589	26	20	17	35	1.94
55337904--55337990	43	2.0	43	100	0	174	44	22	0	32	1.53
55337910--55337978	21	3.2	21	63	25	54	43	23	0	33	1.54
55341284--55341336	26	2.0	28	88	7	83	49	13	22	15	1.79
55341528--55341591	33	1.9	33	100	0	128	43	6	28	21	1.77
55342077--55342257	90	2.0	90	95	0	326	46	12	6	34	1.67
55345818--55345984	28	6.0	28	87	0	226	28	22	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55346366--55346547	27	6.7	27	78	7	163	20	18	21	39	1.92
55346378--55346547	54	3.1	53	80	5	189	20	18	20	41	1.91
55346486--55346566	27	3.0	27	83	5	74	18	19	22	39	1.92
55347243--55347291	24	2.0	25	84	4	64	28	34	4	32	1.76
55352075--55352124	15	3.2	15	82	5	55	68	4	12	16	1.35
55354173--55354215	21	2.0	22	86	9	61	41	4	0	53	1.21
55354269--55354319	25	2.2	23	89	10	77	39	7	3	49	1.51
55354535--55354611	31	2.6	30	83	4	102	41	0	2	55	1.13
55362590--55362632	21	2.0	22	86	9	61	41	4	0	53	1.21
55362686--55362734	24	2.2	22	85	10	64	38	8	4	48	1.52
55362956--55363014	31	2.0	30	90	6	93	49	0	1	49	1.11
55365486--55365568	41	2.0	41	92	0	139	43	6	22	27	1.77
55367116--55367159	23	1.9	23	95	0	79	40	11	11	36	1.77
55372401--55372462	29	2.2	28	80	5	72	25	16	14	43	1.86
55372740--55373010	124	2.2	125	89	5	415	30	15	22	32	1.95
55376498--55376547	26	2.0	25	84	4	64	54	10	4	32	1.52
55376567--55376652	36	2.3	36	82	7	93	52	0	8	39	1.31
55378283--55378438	43	3.4	43	67	14	114	27	24	17	30	1.98
55378296--55378474	95	1.9	95	92	0	304	27	23	19	29	1.98
55378543--55379187	50	12.9	50	72	5	302	26	20	21	32	1.97
55378564--55379188	100	6.3	99	87	2	684	25	20	21	33	1.97
55378700--55378871	49	3.5	49	72	9	161	23	21	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55378744--55379188	150	3.0	148	71	8	346	26	19	20	33	1.97
55391729--55391774	3	15.3	3	95	0	83	63	2	0	34	1.07
55392143--55392180	16	2.4	17	82	13	53	47	13	0	39	1.42
55392777--55392965	94	2.0	94	100	0	378	20	12	31	35	1.90
55393181--55393259	23	3.4	23	89	0	122	29	1	18	50	1.55
55393227--55393645	29	14.7	29	84	4	548	32	0	22	44	1.57
55393925--55393980	24	2.3	24	90	0	85	21	16	33	28	1.95
55395807--55395840	15	2.3	15	90	5	52	67	5	0	26	1.13
55395836--55395865	13	2.2	13	94	5	51	56	0	0	43	0.99
55395836--55395865	7	4.4	7	91	8	53	56	0	0	43	0.99
55395945--55396001	28	2.0	29	89	3	89	56	1	0	42	1.10
55396037--55396087	22	2.3	21	83	9	66	33	0	33	33	1.58
55396040--55396139	52	1.9	52	91	0	164	38	0	32	30	1.58
55396092--55396147	22	2.5	22	97	2	103	41	0	30	28	1.57
55403834--55404017	59	3.1	58	67	20	153	43	1	4	50	1.31
55403786--55404059	120	2.3	120	96	0	503	43	1	3	51	1.26
55403786--55404058	61	4.6	58	70	12	203	43	1	3	51	1.26
55404044--55404076	11	3.0	11	91	8	50	42	0	0	57	0.98
55403986--55404099	44	2.6	39	73	20	93	42	0	0	55	1.12
55404195--55404288	44	2.1	46	90	4	147	38	27	5	28	1.79
55404270--55404322	16	3.3	16	97	0	97	22	33	5	37	1.78
55405035--55405110	39	1.9	39	82	10	93	36	10	2	50	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55409434--55409461	3	9.3	3	100	0	56	67	0	0	32	0.91
55409869--55409932	23	2.8	23	82	0	74	37	14	21	26	1.92
55410604--55410639	18	1.9	18	88	5	54	50	8	0	41	1.33
55412344--55412390	19	2.5	18	86	6	58	19	0	4	76	0.95
55412355--55412383	13	2.1	14	93	6	51	20	0	0	79	0.74
55414424--55414473	25	2.0	24	81	11	57	26	0	8	66	1.19
55421601--55421697	41	2.4	41	87	0	140	34	30	15	19	1.93
55421864--55422010	72	2.0	72	100	0	294	48	12	6	32	1.67
55425690--55425742	3	17.3	3	96	3	97	67	0	0	32	0.91
55429116--55429237	41	3.0	41	98	0	235	45	8	19	26	1.78
55429121--55429230	23	5.2	23	61	27	64	45	8	19	27	1.78
55431562--55431606	22	2.0	22	91	0	72	46	8	8	35	1.66
55433659--55433734	38	2.0	38	100	0	152	28	28	10	31	1.90
55438260--55438309	25	2.0	25	88	7	75	24	26	22	28	1.99
55447809--55447848	20	2.0	20	100	0	80	5	0	30	65	1.14
55449062--55449150	44	2.0	44	100	0	178	38	13	4	43	1.64
55449427--55449474	19	2.5	18	86	10	60	56	0	4	39	1.19
55449439--55449480	19	2.2	19	83	8	50	59	0	2	38	1.10
55452554--55452609	26	2.2	25	90	6	94	44	7	0	48	1.30
55453112--55453159	19	2.5	18	86	10	60	56	0	4	39	1.19
55453124--55453165	19	2.2	19	83	8	50	59	0	2	38	1.10
55455945--55455991	22	2.1	22	100	0	94	42	8	21	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55463057--55463102	24	1.9	25	86	8	69	32	8	0	58	1.28
55463091--55463158	29	2.3	30	80	10	86	33	1	0	64	1.02
55464190--55464232	2	21.5	2	80	0	50	44	2	4	48	1.36
55464569--55464690	62	2.0	61	95	4	219	40	3	5	50	1.43
55470377--55470682	109	2.8	109	90	1	474	32	18	16	31	1.94
55471199--55471233	17	2.1	17	89	10	54	60	0	11	28	1.32
55471227--55471266	19	2.0	20	86	13	57	67	2	7	22	1.28
55473183--55473632	87	5.2	87	87	1	600	25	25	21	27	1.99
55473183--55473632	175	2.6	174	87	2	609	25	25	21	27	1.99
55473609--55475188	46	34.4	46	93	0	2568	27	31	16	24	1.96
55475556--55475613	24	2.4	24	85	0	80	27	24	12	36	1.91
55476077--55476364	97	3.0	97	83	7	318	47	9	17	25	1.77
55476649--55476724	26	3.0	24	77	19	73	1	11	5	81	0.91
55476647--55476724	12	5.8	12	75	21	59	1	12	5	80	0.93
55479407--55479438	5	6.4	5	100	0	64	40	18	18	21	1.91
55480359--55480664	109	2.8	109	89	1	456	32	18	16	32	1.93
55481178--55481212	17	2.1	17	89	10	54	60	0	11	28	1.32
55484361--55484397	3	12.3	3	100	0	74	67	0	0	32	0.91
55485505--55485548	23	1.9	23	86	9	63	63	0	4	31	1.14
55486457--55486485	15	1.9	15	100	0	58	51	13	27	6	1.66
55486698--55486737	19	2.2	19	86	13	57	15	2	42	40	1.60
55487508--55487552	23	2.0	23	86	4	65	46	17	2	33	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55487505--55487562	22	2.6	22	84	7	73	43	18	1	36	1.61
55489000--55489104	41	2.6	41	84	0	129	22	23	24	28	1.99
55493891--55493937	23	2.0	24	84	12	62	53	8	17	21	1.70
55508726--55508812	24	3.9	22	77	20	92	35	1	1	62	1.11
55508729--55508800	20	3.5	20	81	14	83	33	1	0	65	1.02
55508729--55508809	20	3.9	20	78	15	58	35	1	1	61	1.12
55518578--55518615	18	2.1	18	95	0	67	50	18	15	15	1.79
55520591--55520635	18	2.5	18	82	7	56	55	2	0	42	1.12
55520707--55520772	19	3.4	19	73	10	62	57	3	9	30	1.45
55520958--55521045	29	3.0	29	93	0	149	31	5	3	59	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199