genome.fa.s18.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  146  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48472640--48472806	41	4.1	41	75	7	135	23	17	26	32	1.97
48472981--48473056	7	10.7	7	79	8	82	18	0	32	48	1.48
48472991--48473056	29	2.3	28	87	5	96	18	0	31	50	1.47
48473095--48473134	20	2.0	20	90	5	62	20	0	27	52	1.46
48473000--48473120	64	1.9	64	81	6	147	20	0	33	45	1.57
48473379--48473458	21	3.8	21	81	3	90	25	0	40	35	1.56
48473415--48473444	14	2.1	14	93	0	51	23	0	50	26	1.50
48477506--48477562	27	2.2	26	81	9	62	26	8	1	63	1.34
48477686--48477730	20	2.2	20	80	11	56	53	4	0	42	1.21
48477778--48477956	43	4.2	43	83	4	218	24	17	29	27	1.98
48477793--48477976	43	4.3	43	83	3	210	23	19	29	27	1.98
48477810--48477976	86	1.9	86	86	2	237	23	19	29	26	1.98
48490325--48490433	40	2.7	40	88	1	146	20	33	16	30	1.94
48506862--48506938	30	2.7	27	75	23	77	50	2	2	44	1.29
48506746--48507106	197	1.8	197	84	4	501	47	8	6	38	1.59
48514494--48514578	11	8.5	11	69	23	53	37	1	0	61	1.04
48514527--48514567	17	2.4	17	100	0	82	39	0	0	60	0.96
48514995--48515473	138	3.5	138	80	1	426	36	23	21	18	1.95
48515241--48515347	33	3.2	33	64	17	83	41	22	19	16	1.90
48515247--48515351	36	3.0	36	64	18	94	39	23	20	16	1.92
48514997--48515494	207	2.4	207	81	2	525	36	23	21	19	1.95
48514995--48515494	69	7.2	69	79	1	387	36	23	21	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48515179--48515489	138	2.3	138	87	1	435	36	23	21	17	1.94
48519196--48519306	41	2.7	41	85	2	134	24	18	22	35	1.96
48528108--48528225	58	2.1	57	82	7	141	53	4	0	41	1.26
48528164--48528203	20	2.1	19	90	4	62	60	0	0	40	0.97
48533986--48534044	9	6.6	9	84	0	82	45	15	8	30	1.75
48533986--48534044	18	3.3	18	90	0	91	45	15	8	30	1.75
48533994--48534052	18	3.3	18	90	0	91	44	18	8	28	1.79
48534060--48534122	17	3.5	17	69	12	54	50	9	4	34	1.56
48534051--48534142	37	2.5	37	75	10	91	47	11	5	34	1.63
48534276--48534300	13	1.9	13	100	0	50	12	0	48	40	1.40
48539378--48539516	43	3.5	43	74	18	172	35	28	16	20	1.94
48539273--48539475	103	2.0	103	96	0	370	33	28	19	19	1.96
48539376--48539551	76	2.3	76	100	0	352	34	28	18	18	1.95
48539238--48539654	179	2.3	179	94	0	719	33	27	19	20	1.96
48539452--48539657	103	2.0	103	96	0	376	33	27	19	20	1.97
48542279--48542340	25	2.5	25	86	0	79	37	17	17	27	1.93
48542284--48542347	25	2.6	25	84	0	65	35	18	18	26	1.94
48543644--48543748	52	2.0	52	92	0	174	14	21	19	44	1.86
48548184--48548278	24	3.6	26	75	12	79	61	2	8	28	1.37
48548170--48548253	7	11.3	7	74	9	69	63	2	5	28	1.31
48548162--48548278	14	7.5	15	70	18	69	62	1	6	29	1.31
48548924--48548957	17	1.9	18	88	5	52	79	2	11	5	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48549850--48550658	50	16.5	50	67	11	341	21	25	23	28	1.99
48549838--48550662	99	8.4	99	87	2	1055	21	25	23	28	1.99
48550219--48550658	49	8.9	50	70	6	297	22	25	22	29	1.99
48557306--48557356	25	2.0	26	85	11	70	76	3	15	3	1.08
48560170--48560237	24	2.8	25	76	14	70	35	23	26	14	1.94
48560352--48560475	26	4.8	26	86	3	135	35	20	28	15	1.93
48560912--48560954	21	2.0	21	86	0	59	34	23	2	39	1.67
48561190--48561227	16	2.4	16	95	0	67	36	2	34	26	1.71
48561209--48561301	44	2.1	44	86	9	127	32	4	27	35	1.77
48561616--48561992	120	3.2	117	89	5	510	50	5	2	41	1.38
48561761--48561795	17	2.1	17	100	0	70	65	0	0	34	0.93
48561438--48562161	102	7.0	102	77	13	680	49	6	2	41	1.39
48561880--48561915	18	2.0	18	88	0	54	61	0	0	38	0.96
48561660--48561986	120	2.7	119	96	0	584	50	5	2	41	1.39
48561899--48562038	38	3.7	36	71	12	120	48	7	2	41	1.44
48561897--48562062	76	2.2	76	94	0	287	50	7	2	39	1.43
48562047--48562139	40	2.3	41	76	16	95	51	6	1	40	1.35
48563555--48563652	49	2.0	49	90	4	153	50	10	8	31	1.66
48565780--48565850	27	2.5	28	77	20	69	45	2	5	46	1.41
48574186--48574793	207	2.9	207	77	2	657	28	23	16	30	1.96
48588842--48588876	15	2.2	17	90	10	56	37	20	11	31	1.88
48589519--48589589	36	2.0	36	88	0	106	21	21	16	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48591380--48591424	23	2.0	23	100	0	90	13	22	26	37	1.91
48595291--48595316	11	2.4	11	100	0	52	50	7	42	0	1.31
48596742--48596926	40	4.7	40	82	8	218	24	27	22	25	2.00
48596742--48596926	79	2.3	82	82	9	222	24	27	22	25	2.00
48599170--48599256	40	2.2	40	83	6	106	34	5	19	40	1.76
48599431--48599513	39	2.2	39	86	6	116	19	20	21	38	1.93
48599431--48599603	45	4.2	39	76	18	152	19	19	21	38	1.93
48599458--48599612	45	3.4	45	89	0	247	19	18	21	41	1.91
48599587--48599623	6	5.8	6	90	9	56	21	16	16	45	1.84
48601650--48601698	20	2.5	20	89	0	71	28	6	30	34	1.82
48603831--48603900	21	3.3	20	71	15	61	18	20	17	44	1.87
48603826--48603938	42	2.7	42	83	5	131	15	23	17	43	1.87
48603886--48603955	21	3.4	21	76	3	63	11	28	22	37	1.89
48608163--48608220	28	2.0	28	83	9	73	50	1	1	46	1.22
48608159--48608227	28	2.5	25	74	19	66	52	1	1	44	1.19
48609180--48609212	15	2.1	16	94	5	59	72	0	0	27	0.85
48609932--48609971	21	2.0	20	85	5	53	10	35	0	55	1.34
48613520--48614024	44	11.8	42	70	11	242	29	20	20	30	1.97
48613516--48614044	129	4.1	129	85	0	736	28	20	19	31	1.97
48613978--48614111	67	2.0	67	98	0	259	26	19	17	36	1.94
48614059--48614391	44	7.7	44	70	8	218	28	21	19	30	1.97
48614153--48614339	85	2.2	85	95	0	338	26	20	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48613745--48614369	325	1.9	324	83	3	801	28	20	19	31	1.97
48615145--48615201	24	2.4	23	82	8	69	31	19	14	35	1.91
48615657--48616041	97	4.0	97	92	0	626	47	8	16	27	1.76
48615777--48615935	49	3.3	48	66	22	125	46	7	16	29	1.74
48616324--48616377	6	8.7	6	76	15	56	0	20	0	79	0.73
48616326--48616392	5	12.8	5	83	10	64	0	16	1	82	0.75
48616326--48616382	9	6.4	9	76	23	59	0	19	0	80	0.71
48616326--48616392	26	2.6	26	84	13	93	0	16	1	82	0.75
48621327--48621379	3	17.7	3	80	0	61	58	1	7	32	1.37
48623318--48623362	23	2.0	23	95	0	81	40	20	8	31	1.83
48623319--48623368	23	2.2	23	88	0	73	42	20	10	28	1.84
48626693--48626913	51	4.3	52	80	3	236	31	27	17	24	1.97
48630271--48630307	17	2.2	17	95	0	65	37	13	27	21	1.91
48634343--48634563	51	4.4	50	78	4	194	32	25	16	25	1.96
48635980--48636033	17	3.2	17	78	5	56	70	7	3	18	1.26
48642875--48642914	16	2.6	15	84	7	53	25	5	0	70	1.08
48646186--48646325	41	3.5	40	80	6	144	30	24	19	25	1.98
48646903--48646971	28	2.5	28	83	9	79	33	15	2	47	1.61
48646959--48646983	12	2.1	12	100	0	50	36	8	0	56	1.29
48656379--48656422	18	2.6	17	86	10	63	70	0	2	27	0.99
48658394--48658457	27	2.4	27	76	5	67	20	29	15	34	1.94
48673086--48673340	29	8.9	29	72	13	97	26	14	21	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48673134--48673252	58	2.1	58	85	0	157	29	13	19	37	1.90
48679584--48679746	43	3.8	42	76	9	159	28	15	25	29	1.96
48695010--48695126	25	4.9	25	78	12	138	3	22	23	51	1.63
48695029--48695136	44	2.5	44	89	0	162	1	22	23	52	1.56
48695098--48695136	19	2.1	19	95	0	69	0	25	23	51	1.49
48695824--48695848	13	1.9	13	100	0	50	84	0	16	0	0.63
48697549--48697609	24	2.5	24	100	0	122	6	42	3	47	1.45
48697560--48697605	13	3.7	13	74	11	51	8	39	4	47	1.54
48699215--48699262	18	2.7	18	100	0	96	35	14	12	37	1.84
48699686--48699858	72	2.4	73	83	5	228	26	7	12	53	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199