genome.fa.s18.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  172  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55521034--55521139	19	5.6	19	79	13	71	41	1	0	56	1.10
55521045--55521139	18	5.1	18	76	13	52	41	2	0	56	1.11
55521070--55521114	17	2.6	17	89	3	63	37	2	0	60	1.09
55521105--55521139	11	3.3	11	92	4	54	40	0	0	60	0.97
55524420--55524469	5	10.2	5	76	20	52	60	2	0	38	1.09
55531555--55531973	153	2.8	152	85	6	587	52	7	8	31	1.58
55533318--55533614	147	2.0	147	95	0	531	20	14	15	50	1.78
55543186--55543233	25	1.9	25	87	8	71	16	16	14	52	1.76
55547883--55547940	28	2.1	28	100	0	116	29	20	6	43	1.78
55548635--55548728	9	10.4	9	83	4	109	41	24	8	25	1.83
55548635--55548720	27	3.2	27	85	6	120	41	24	9	24	1.84
55553495--55553524	13	2.3	13	94	0	51	33	3	13	50	1.58
55553617--55553859	50	4.9	50	87	2	337	25	21	31	21	1.98
55559967--55560107	50	2.8	50	86	1	192	22	29	20	26	1.99
55565334--55565374	3	13.7	3	94	0	73	68	0	29	2	1.03
55566641--55566684	23	2.0	23	86	4	63	54	0	4	40	1.21
55569964--55569999	19	1.9	18	88	5	54	30	2	0	66	1.06
55569963--55570011	18	2.7	18	84	12	64	28	2	0	69	1.00
55569974--55570037	30	2.1	32	85	11	89	29	4	0	65	1.13
55571419--55571478	16	3.8	16	75	16	61	26	20	18	35	1.95
55571546--55571611	24	2.8	23	81	4	78	31	18	15	34	1.92
55574480--55574830	125	2.8	123	90	2	524	27	14	21	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55577953--55578029	37	2.1	36	83	7	93	46	1	9	42	1.43
55578078--55578121	23	1.9	23	85	0	61	27	4	11	56	1.53
55578112--55578209	21	4.6	21	80	13	119	29	0	27	42	1.56
55578110--55578209	43	2.3	43	91	3	157	29	0	28	43	1.56
55578195--55578681	23	21.9	23	79	12	534	29	0	21	49	1.50
55578248--55578307	18	3.1	18	74	21	57	30	0	20	50	1.49
55578155--55578681	89	5.9	88	80	12	469	29	0	21	48	1.50
55578459--55578518	24	2.3	27	72	22	63	21	0	28	50	1.49
55578512--55578554	17	2.4	18	84	7	61	34	0	13	51	1.42
55578176--55578685	244	2.1	240	83	9	624	29	0	21	49	1.50
55578577--55578619	18	2.4	17	77	11	50	30	0	16	53	1.43
55578210--55578656	41	10.2	41	75	16	314	29	0	21	49	1.49
55578712--55578748	9	4.2	9	89	3	58	59	10	2	27	1.44
55578712--55578748	18	2.1	17	95	5	65	59	10	2	27	1.44
55579226--55579265	18	2.2	18	90	0	62	42	7	27	22	1.80
55579916--55579948	7	4.7	7	100	0	66	57	15	0	27	1.38
55581136--55581167	17	1.9	16	93	6	55	56	0	25	18	1.42
55584094--55584133	20	2.1	19	90	4	62	0	25	35	40	1.56
55584113--55584171	25	2.4	25	91	0	100	1	27	25	45	1.63
55585555--55585637	41	2.0	41	97	0	157	32	19	8	39	1.81
55593392--55593425	10	3.6	9	88	11	50	58	0	0	41	0.98
55593398--55593430	10	3.2	11	87	12	52	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55597312--55597343	10	3.2	10	95	0	55	59	0	3	37	1.13
55600605--55600668	26	2.4	27	75	12	71	40	17	4	37	1.70
55606253--55606454	105	1.9	105	82	2	253	28	24	14	32	1.95
55609998--55610053	14	3.7	14	73	17	58	57	0	3	39	1.16
55609979--55610073	32	3.0	32	79	17	117	55	0	2	42	1.11
55609979--55610115	10	13.2	11	67	24	50	56	0	2	40	1.14
55609999--55610048	16	3.1	16	73	15	50	52	0	4	44	1.20
55610004--55610114	40	2.7	41	84	8	136	59	0	3	36	1.15
55611554--55611633	29	2.7	29	82	9	90	31	3	11	53	1.54
55613498--55613561	23	2.8	23	73	0	65	31	17	29	21	1.96
55615775--55615967	50	3.8	50	90	0	296	20	30	23	26	1.98
55616061--55616091	13	2.4	13	94	0	53	54	12	0	32	1.38
55616303--55616360	30	1.9	30	89	0	89	31	24	3	41	1.71
55623271--55623503	51	4.8	50	73	17	181	21	30	22	25	1.99
55623596--55623627	13	2.5	13	94	0	55	56	12	0	31	1.37
55626258--55626446	50	3.8	50	88	2	272	20	29	24	25	1.99
55626543--55626574	13	2.5	13	94	0	55	56	12	0	31	1.37
55626784--55626841	30	1.9	30	89	0	89	31	24	3	41	1.71
55633772--55633964	50	3.8	50	90	0	296	20	30	23	26	1.98
55634058--55634088	13	2.4	13	94	0	53	54	12	0	32	1.38
55634300--55634357	30	1.9	30	89	0	89	31	24	3	41	1.71
55647293--55647379	45	2.0	44	88	6	131	36	2	6	54	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55649379--55649410	16	2.0	16	100	0	64	31	6	25	37	1.81
55654624--55654661	14	2.7	15	84	15	55	39	0	0	60	0.97
55667715--55667889	30	5.8	30	93	0	278	25	47	3	24	1.67
55677470--55677672	30	6.8	30	94	2	338	23	3	48	24	1.66
55677470--55677672	88	2.3	89	93	3	345	23	3	48	24	1.66
55678418--55678467	14	3.6	14	81	7	57	64	4	12	20	1.43
55678447--55680026	73	20.3	73	72	16	810	34	20	16	28	1.94
55678830--55678857	14	2.0	14	100	0	56	57	7	21	14	1.61
55679061--55679092	14	2.3	14	94	0	55	65	9	12	12	1.47
55678987--55679147	87	1.9	85	84	7	218	36	21	16	26	1.94
55678458--55680002	384	4.0	384	81	9	1614	34	20	16	28	1.95
55679083--55679684	151	3.9	146	79	10	578	34	21	15	28	1.94
55679452--55679479	14	2.0	14	100	0	56	57	7	21	14	1.61
55679228--55680659	237	5.9	240	76	15	1055	35	19	16	28	1.93
55679691--55679718	14	2.0	14	100	0	56	57	7	21	14	1.61
55679700--55679862	70	2.3	71	88	5	238	37	19	17	25	1.93
55679867--55680004	71	1.9	71	94	0	240	31	18	16	34	1.93
55679540--55680089	159	3.4	158	80	11	582	34	19	16	28	1.94
55679961--55680127	88	1.9	87	82	7	212	41	16	13	28	1.87
55680156--55680664	77	6.6	73	75	13	398	33	20	15	30	1.93
55680350--55680527	89	2.0	88	90	7	281	39	17	12	30	1.87
55680286--55680602	160	1.9	163	86	7	448	34	19	15	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55680435--55680664	75	3.1	75	84	8	315	33	20	16	29	1.94
55682417--55682503	25	3.7	25	80	7	85	32	6	5	55	1.50
55682419--55682508	23	3.9	24	75	12	73	33	6	5	54	1.50
55682617--55682686	30	2.3	31	78	14	74	31	1	1	65	1.10
55682635--55682682	23	2.1	23	92	7	80	31	0	2	66	1.03
55682635--55682675	7	5.6	7	94	2	64	31	0	2	65	1.05
55682628--55682675	16	3.2	15	91	5	71	31	2	2	64	1.16
55682635--55682686	16	3.3	16	84	15	65	30	0	1	67	1.02
55684923--55684983	30	2.1	29	90	3	95	37	19	9	32	1.85
55686175--55686561	195	2.0	194	84	5	514	29	18	16	35	1.93
55700349--55700407	29	2.0	29	96	0	109	44	6	13	35	1.71
55704405--55704436	1	32.0	1	93	0	55	96	3	0	0	0.20
55704403--55704440	7	5.7	7	90	6	53	92	7	0	0	0.40
55709343--55709371	13	2.2	13	100	0	58	13	0	0	86	0.58
55716156--55716216	21	2.7	22	80	10	70	73	3	0	22	0.97
55716438--55716471	15	2.4	14	95	5	59	61	5	0	32	1.20
55718347--55718727	44	8.7	44	77	9	291	27	23	19	29	1.99
55718280--55718727	88	5.1	87	75	11	357	27	23	20	29	1.98
55718475--55718562	46	1.9	46	92	0	149	29	26	18	26	1.98
55719996--55720039	7	6.6	7	84	10	65	15	18	0	65	1.27
55719999--55720039	13	3.2	13	89	6	57	14	17	0	68	1.22
55719996--55720039	20	2.2	20	95	0	79	15	18	0	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55720000--55720046	13	3.8	12	84	15	53	14	17	0	68	1.22
55720934--55720982	20	2.5	21	83	9	59	10	20	0	69	1.17
55721028--55721072	21	2.2	21	88	4	65	11	4	6	77	1.09
55728933--55729314	189	2.0	190	85	3	509	30	17	15	36	1.91
55731800--55731858	25	2.4	25	82	0	73	35	16	25	22	1.95
55733492--55733574	6	13.8	6	78	5	69	21	16	13	48	1.81
55750880--55750924	23	1.9	23	82	13	56	15	8	40	35	1.79
55750993--55751222	125	1.8	125	87	3	347	30	15	23	31	1.95
55754397--55755779	29	52.1	27	72	20	948	30	0	22	46	1.52
55754426--55754460	17	2.0	18	88	5	54	31	0	20	48	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199