genome.fa.s18.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  193  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61183975--61184137	80	2.0	80	97	0	308	38	12	15	33	1.86
61185702--61185741	17	2.4	17	82	0	53	55	2	12	30	1.50
61190827--61190868	3	14.0	3	100	0	84	0	33	0	66	0.92
61202570--61202603	16	2.1	16	88	0	50	17	11	17	52	1.73
61205561--61205591	14	2.2	14	94	0	53	38	32	9	19	1.84
61207431--61207482	22	2.4	22	90	0	86	21	28	15	34	1.94
61212564--61213197	340	1.9	340	96	0	1178	34	14	9	41	1.79
61213720--61213765	24	1.9	24	86	0	65	45	4	2	47	1.34
61213958--61214023	13	5.1	13	75	0	69	34	24	9	31	1.87
61223009--61223049	21	2.0	21	81	18	50	21	26	19	31	1.97
61232038--61232089	26	2.0	26	100	0	104	42	23	15	19	1.89
61233086--61233145	22	2.6	24	77	20	65	63	5	1	30	1.25
61234465--61234496	13	2.3	15	84	15	50	53	0	3	43	1.16
61239012--61239179	44	4.0	41	71	8	120	29	22	18	29	1.97
61238967--61239223	129	2.0	128	83	4	320	30	21	17	29	1.96
61253267--61253317	23	2.2	23	82	6	59	21	17	45	15	1.86
61254058--61254161	54	1.9	54	82	3	129	41	0	5	51	1.32
61258713--61258765	23	2.4	22	79	14	56	35	1	0	62	1.06
61262355--61262388	17	2.0	17	94	0	59	44	50	0	5	1.26
61266983--61267016	17	2.0	17	94	0	59	44	50	0	5	1.26
61267614--61267655	21	2.0	21	95	0	75	50	4	16	28	1.66
61268319--61268420	44	2.3	44	89	0	150	50	11	22	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61268337--61268486	44	3.2	44	79	14	149	53	12	22	12	1.71
61268391--61268540	52	2.9	52	90	2	230	50	11	24	14	1.75
61268851--61268931	42	1.9	42	94	0	144	34	6	12	46	1.66
61269714--61269811	44	2.2	45	81	5	119	31	23	15	29	1.95
61269745--61269909	44	3.8	44	79	5	156	30	21	18	29	1.97
61270363--61270502	44	3.2	44	64	8	104	29	20	22	27	1.99
61270270--61271141	88	9.9	88	87	0	1116	30	22	18	29	1.97
61270699--61270839	43	3.2	43	69	11	124	26	24	18	31	1.98
61271943--61272158	104	2.0	106	83	4	274	48	8	15	26	1.74
61273645--61273697	11	5.0	10	78	17	54	0	22	0	77	0.77
61273653--61273682	14	2.1	14	93	0	51	0	23	0	76	0.78
61273651--61273696	17	2.7	17	83	9	58	0	21	0	78	0.76
61275494--61275671	27	6.6	27	85	3	214	30	28	14	26	1.95
61275515--61275670	82	1.9	81	89	3	242	30	28	14	26	1.95
61279905--61279959	26	2.1	26	83	6	67	1	27	1	69	1.09
61280466--61280670	62	3.3	62	70	5	178	26	24	24	24	2.00
61280385--61280669	126	2.3	125	88	0	417	27	24	25	22	2.00
61282025--61282064	19	2.0	20	85	14	55	47	2	0	50	1.14
61284634--61284693	21	2.8	20	80	12	59	25	5	0	70	1.08
61284846--61284882	14	2.6	15	83	12	51	10	5	8	75	1.17
61284846--61284911	15	4.4	14	77	21	62	13	3	6	77	1.08
61289490--61289536	21	2.2	22	92	3	78	21	19	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61293114--61293180	27	2.5	26	83	9	91	41	7	1	49	1.40
61293253--61293330	27	2.9	27	92	3	122	26	25	30	16	1.97
61293382--61293456	12	6.6	12	71	22	56	66	0	33	0	0.92
61293375--61293417	22	2.0	21	86	13	61	65	0	34	0	0.93
61293377--61293514	10	13.2	10	68	17	52	65	0	33	0	0.98
61293377--61293463	34	3.0	28	74	20	79	66	0	33	0	0.92
61293380--61293558	38	4.8	38	81	12	187	67	0	31	0	0.95
61293376--61293563	76	2.6	75	79	13	214	66	0	32	1	0.99
61294237--61294288	19	2.7	19	87	0	68	25	0	7	67	1.17
61294324--61294391	26	2.5	27	90	9	104	41	10	0	48	1.37
61299108--61299145	18	2.1	18	95	0	67	13	47	5	34	1.65
61299111--61299152	18	2.3	18	87	0	66	19	50	2	28	1.60
61299803--61299854	26	2.0	26	100	0	104	46	0	3	50	1.20
61299909--61299937	3	9.7	3	100	0	58	65	0	0	34	0.93
61300299--61300331	17	1.9	17	100	0	66	3	6	6	84	0.84
61300334--61300399	28	2.4	28	87	2	98	46	3	9	40	1.51
61303128--61303161	16	2.1	16	88	0	50	17	11	17	52	1.73
61309370--61309425	21	2.7	21	94	0	94	28	8	33	28	1.87
61310375--61310424	25	2.0	25	96	0	91	42	28	14	16	1.86
61318167--61318203	18	2.1	18	89	0	56	48	8	8	35	1.62
61318451--61318481	16	1.9	16	93	0	53	35	6	9	48	1.62
61319296--61319371	34	2.2	34	86	4	100	26	13	15	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61322867--61323015	33	4.5	33	77	9	124	24	21	20	33	1.97
61322867--61323011	66	2.2	66	82	2	175	24	22	20	32	1.98
61323005--61323091	36	2.4	36	90	0	129	35	21	16	26	1.94
61323865--61323890	11	2.4	11	100	0	52	61	7	0	30	1.24
61324783--61324858	34	2.2	34	83	4	91	28	13	14	43	1.83
61328083--61328158	34	2.2	34	80	0	89	28	26	19	25	1.99
61331003--61331054	7	7.6	7	91	4	88	44	40	0	15	1.46
61331003--61331055	20	2.6	21	93	3	90	43	39	0	16	1.49
61348130--61348190	30	2.0	30	93	0	104	22	22	32	21	1.98
61350655--61350711	30	1.9	30	88	0	87	24	35	29	10	1.89
61352988--61353078	37	2.5	37	96	0	164	15	10	39	34	1.82
61357054--61357113	22	2.5	23	81	13	68	50	8	16	25	1.73
61372846--61372891	17	2.6	19	83	16	71	60	6	8	23	1.49
61373879--61373953	28	2.5	30	81	16	86	60	2	2	34	1.25
61373892--61373934	20	2.1	21	86	4	61	62	2	0	34	1.08
61373907--61373972	10	7.0	9	70	16	53	60	3	3	33	1.27
61373771--61373972	9	21.7	9	66	20	62	59	2	3	34	1.28
61374062--61374096	17	2.0	18	94	5	63	25	0	0	74	0.82
61374371--61374491	9	13.6	9	75	13	67	32	2	2	62	1.21
61374372--61374491	19	6.7	19	69	27	61	32	2	2	62	1.22
61374384--61374435	19	2.7	19	88	8	70	40	1	3	53	1.30
61375864--61376180	96	3.3	96	89	1	469	40	17	1	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61389657--61389721	31	2.1	31	97	0	121	43	9	12	35	1.74
61391150--61391544	193	2.0	193	96	0	720	44	5	15	34	1.70
61392340--61392365	13	2.0	13	100	0	52	69	0	30	0	0.89
61393218--61393258	4	10.2	4	100	0	82	24	0	24	51	1.49
61393784--61393815	13	2.4	14	90	10	50	65	0	0	34	0.93
61394109--61394147	18	2.2	18	85	0	51	35	20	0	43	1.52
61395191--61395229	20	2.0	20	85	10	53	38	17	7	35	1.79
61403252--61403306	4	13.5	4	92	3	92	25	0	27	47	1.52
61404812--61404836	7	3.6	7	100	0	50	16	12	40	32	1.84
61407092--61407130	21	1.9	20	89	5	60	25	2	5	66	1.25
61412364--61412394	15	2.1	15	100	0	62	54	6	6	32	1.51
61412808--61412863	26	2.1	27	83	6	71	53	5	3	37	1.41
61417676--61417725	17	2.7	20	78	18	70	10	0	44	46	1.37
61422315--61422364	17	2.7	20	78	18	70	10	0	44	46	1.37
61423483--61423531	14	3.4	14	75	25	57	61	6	6	26	1.43
61427888--61427947	30	2.0	30	96	0	111	10	6	18	65	1.45
61430315--61430440	29	4.3	29	71	8	94	32	22	5	39	1.77
61430337--61430449	58	1.9	57	80	7	129	29	23	7	38	1.83
61430965--61431042	10	7.7	10	73	21	56	78	0	17	3	0.90
61430956--61431025	22	3.3	22	74	16	67	75	0	22	1	0.88
61430967--61431034	13	4.9	13	74	15	57	77	0	19	2	0.89
61431430--61431459	16	1.9	16	93	6	53	36	3	0	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61431995--61432056	18	3.7	18	75	22	62	35	8	12	43	1.73
61437589--61437647	9	6.7	9	71	11	50	81	10	5	3	0.96
61438521--61439924	82	17.5	80	84	8	1636	29	16	18	35	1.93
61438521--61439924	165	8.7	162	85	6	1655	29	16	18	35	1.93
61438503--61439924	402	3.5	399	86	6	1887	28	16	18	36	1.93
61440101--61440131	9	3.6	9	95	4	55	83	6	0	9	0.79
61440128--61440253	29	4.2	30	75	6	114	33	22	4	39	1.75
61440128--61440254	30	4.3	30	71	9	100	33	22	4	40	1.75
61440773--61440811	12	3.2	12	88	3	51	76	0	23	0	0.78
61440776--61440840	20	3.2	20	78	12	62	76	0	18	4	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199