genome.fa.s18.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  24  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9940747--9941093	141	2.4	142	86	9	478	28	21	14	34	1.93
9944158--9944351	49	4.0	48	92	2	298	31	29	14	24	1.94
9945604--9945749	37	4.0	37	92	1	233	25	21	16	36	1.94
9945713--9946078	46	7.6	46	86	8	446	29	22	13	34	1.93
9945756--9946072	52	6.3	52	86	8	417	28	22	13	35	1.92
9945724--9946078	150	2.4	143	93	3	593	29	21	14	34	1.93
9956326--9956364	20	1.9	20	84	5	51	28	10	2	58	1.44
9962666--9962962	81	3.7	80	78	8	282	21	12	35	30	1.91
9964532--9965218	231	3.0	227	90	2	1043	21	12	30	34	1.91
9964529--9965218	228	3.0	229	89	2	1071	21	13	30	34	1.91
9967964--9968009	24	1.9	24	86	0	65	52	2	0	45	1.13
9968864--9968933	3	23.7	3	73	13	56	35	2	2	58	1.28
9969377--9969423	10	4.8	10	78	5	51	74	2	10	12	1.16
9969386--9969427	20	2.2	19	86	4	66	73	2	14	9	1.18
9969382--9969428	24	2.0	24	83	8	60	72	2	14	10	1.21
9976955--9977052	25	4.0	25	72	11	69	33	20	26	19	1.96
9977036--9977082	24	2.0	24	91	0	76	36	14	25	23	1.93
9979575--9979622	16	2.8	17	75	9	53	58	2	4	35	1.29
9987067--9987096	10	3.0	10	95	0	51	56	0	0	43	0.99
9988126--9988193	33	2.1	33	100	0	136	38	5	16	39	1.73
9992803--9992843	21	2.0	21	90	0	64	29	21	29	19	1.98
9995323--9995391	24	3.0	23	79	12	77	39	23	11	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9995320--9995549	47	5.1	47	74	11	196	39	20	14	25	1.90
9995320--9995412	23	4.0	23	83	2	105	38	21	13	25	1.91
9995399--9995426	14	2.0	14	100	0	56	57	14	0	28	1.38
9995332--9995496	84	2.0	84	95	0	294	43	20	12	24	1.86
9995413--9995549	23	5.9	23	78	3	148	40	19	14	25	1.90
9995413--9995547	70	1.9	70	93	0	234	40	19	14	25	1.90
9996311--9996408	41	2.4	41	86	1	126	24	24	11	39	1.88
10002605--10002637	10	3.7	9	88	11	50	0	9	0	90	0.44
10009521--10009546	3	8.7	3	100	0	52	69	0	0	30	0.89
10010896--10010929	18	1.9	17	88	5	50	14	11	0	73	1.10
10012855--10012919	32	2.0	32	90	0	103	18	26	7	47	1.75
10015714--10015743	8	3.8	8	90	0	51	50	0	0	50	1.00
10015695--10015743	16	2.8	17	80	17	55	51	2	2	44	1.24
10017454--10017478	13	1.9	13	100	0	50	40	48	0	12	1.40
10017459--10017539	41	2.0	41	88	9	123	51	27	2	18	1.58
10017668--10017742	37	2.0	37	89	0	114	37	5	13	44	1.66
10020098--10020291	83	2.3	83	98	0	370	25	13	18	41	1.88
10028352--10028391	20	2.0	20	90	0	62	27	10	12	50	1.72
10028337--10028403	34	1.9	35	90	3	109	31	8	13	46	1.74
10028331--10028407	14	5.0	15	71	20	52	33	9	14	42	1.77
10028825--10028852	13	2.2	13	100	0	56	32	0	14	53	1.41
10030231--10030256	12	2.2	12	100	0	52	46	15	7	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10030962--10031019	18	3.2	18	72	0	62	41	5	37	15	1.70
10031980--10032055	9	8.4	9	76	5	64	43	23	6	26	1.78
10031978--10032049	18	4.0	18	81	3	74	45	23	5	25	1.74
10031979--10032047	27	2.6	27	85	0	93	46	21	5	26	1.74
10036768--10036868	40	2.6	39	87	10	152	35	2	0	61	1.11
10036775--10036874	10	10.1	10	72	21	68	40	3	0	57	1.14
10036768--10036874	39	2.8	37	86	10	151	38	2	0	58	1.12
10039986--10040067	40	2.0	42	85	4	114	23	26	28	21	1.99
10040208--10040264	18	2.7	22	74	20	59	50	0	0	49	1.00
10040829--10041136	95	3.3	95	80	11	377	37	16	3	42	1.64
10042266--10042313	21	2.2	23	85	7	64	70	0	2	27	0.98
10042266--10042315	23	2.2	23	82	7	57	72	0	2	26	0.96
10046308--10046361	21	2.6	21	78	18	60	33	0	3	62	1.12
10048856--10048926	24	2.9	24	87	2	97	19	18	22	39	1.92
10052688--10052745	30	1.9	30	85	0	80	43	1	24	31	1.64
10052957--10052988	13	2.5	13	94	0	55	31	0	12	56	1.37
10053083--10053324	50	4.7	50	84	4	288	27	24	28	19	1.99
10053083--10053332	100	2.4	103	86	6	346	26	24	28	20	1.99
10060420--10060470	25	2.0	25	84	0	66	37	15	27	19	1.92
10088552--10088645	47	2.0	47	97	0	179	31	18	21	28	1.96
10096459--10096494	15	2.4	15	95	0	63	83	2	13	0	0.76
10103089--10103150	31	2.0	31	100	0	124	25	6	9	58	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10103926--10103981	27	2.1	27	100	0	112	60	17	3	17	1.50
10106658--10106723	31	2.1	31	100	0	132	40	6	18	34	1.75
10120153--10120181	3	9.7	3	100	0	58	68	0	0	31	0.89
10128920--10128945	9	2.9	9	100	0	52	23	11	19	46	1.82
10129360--10129399	21	1.9	21	89	0	62	35	0	25	40	1.56
10129849--10129928	26	3.1	26	79	12	94	16	21	22	40	1.91
10129896--10130036	73	1.9	73	82	2	176	19	24	20	34	1.96
10137277--10137310	15	2.2	16	89	5	52	67	2	0	29	1.05
10137876--10137914	20	2.0	19	85	5	51	64	5	10	20	1.44
10149382--10149408	3	9.0	3	100	0	54	66	0	33	0	0.92
10152398--10152428	3	10.3	3	100	0	62	64	0	35	0	0.94
10152861--10152924	31	2.1	30	85	2	83	40	0	4	54	1.21
10159242--10159293	21	2.4	22	84	12	63	71	15	5	7	1.29
10159246--10159293	24	2.0	24	88	4	71	70	16	6	6	1.28
10166426--10166564	46	3.0	46	92	0	233	35	9	25	29	1.87
10166963--10167070	33	3.3	33	71	14	96	25	19	17	37	1.94
10166963--10167104	66	2.2	66	90	0	221	26	21	16	35	1.95
10166995--10167103	33	3.3	33	78	5	121	28	20	16	34	1.94
10167085--10167124	20	2.0	20	100	0	80	25	30	15	30	1.95
10168606--10168854	50	4.8	50	83	4	266	21	29	23	26	1.99
10168605--10168847	100	2.3	104	86	6	334	21	29	23	25	1.99
10168949--10168980	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10183118--10183155	19	2.1	18	85	14	51	52	0	5	42	1.24
10199243--10199283	21	2.0	21	85	4	57	60	9	2	26	1.40
10199353--10199412	30	2.0	30	86	0	84	38	3	10	48	1.53
10199371--10199429	30	1.9	31	86	3	84	45	0	8	45	1.33
10203526--10203639	38	3.0	39	85	7	162	37	2	20	39	1.66
10207833--10207872	20	2.0	20	95	0	71	32	20	7	40	1.80
10208012--10208148	37	3.5	41	75	10	142	33	21	16	27	1.95
10208308--10208354	24	2.0	24	84	16	62	51	17	0	31	1.46
10209011--10209084	13	5.2	14	72	18	55	2	22	2	71	1.11
10209107--10209197	35	2.6	36	81	10	107	46	4	0	49	1.22
10211540--10211645	41	2.6	41	96	0	194	21	20	25	32	1.98
10214513--10214593	25	3.2	25	87	0	99	17	22	19	40	1.91
10214869--10214899	14	2.2	14	100	0	62	41	0	29	29	1.56
10215603--10215703	51	2.0	51	92	0	166	34	26	8	29	1.87
10215874--10215950	33	2.3	33	86	4	102	23	50	1	24	1.57
10216551--10216761	117	1.8	117	90	0	341	43	23	9	23	1.84
10216948--10216984	16	2.3	16	95	0	65	32	0	27	40	1.57
10217602--10217653	18	2.8	18	83	13	70	36	0	3	59	1.16
10223199--10223388	50	3.7	50	78	9	177	27	18	28	25	1.98
10223651--10223689	20	2.0	20	89	0	60	53	2	25	17	1.56
10226659--10226693	17	2.1	17	100	0	70	31	22	22	22	1.98
10237612--10237649	17	2.2	17	86	9	51	26	10	5	57	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10239860--10239958	48	2.1	48	92	0	162	30	16	21	32	1.95
10240609--10240634	2	13.0	2	100	0	52	50	0	0	50	1.00
10251338--10251389	25	2.2	25	83	13	65	67	1	0	30	1.02
10258766--10258792	3	9.0	3	100	0	54	0	33	0	66	0.92
10266673--10266698	11	2.4	11	100	0	52	53	0	0	46	1.00
10277335--10277362	2	14.0	2	100	0	56	0	50	0	50	1.00
10285105--10285163	19	3.2	19	80	4	75	37	11	0	50	1.39
10285113--10285147	18	1.9	18	88	0	52	40	11	0	48	1.39
10285234--10285389	82	1.9	82	100	0	312	39	6	10	44	1.64
10285478--10285541	19	3.4	19	78	4	85	51	1	10	35	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199