genome.fa.s18.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  81  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28992706--28992739	18	1.9	18	88	5	52	29	0	5	64	1.17
28992825--28992877	23	2.2	23	80	6	61	62	3	0	33	1.13
28993629--28993695	9	7.4	9	86	6	82	25	7	23	43	1.80
28993629--28993695	18	3.7	18	86	7	91	25	7	23	43	1.80
28993637--28993696	27	2.2	27	87	0	93	25	8	23	43	1.81
28995330--28995361	15	2.0	17	88	11	50	34	9	0	56	1.32
28995817--28995893	31	2.6	30	80	10	86	48	5	22	24	1.71
28996189--28996249	28	2.2	28	87	0	86	49	16	4	29	1.66
28996211--28996251	14	2.9	14	81	0	55	51	9	2	36	1.48
28996205--28996262	28	2.1	28	90	0	89	53	12	3	31	1.54
28996502--28996557	29	1.9	29	89	7	87	23	12	19	44	1.84
28997761--28997802	17	2.5	17	96	3	77	19	0	28	52	1.46
28999239--28999435	105	1.9	105	98	0	385	30	11	16	41	1.83
29003719--29003763	22	2.0	22	100	0	90	22	13	4	60	1.51
29026768--29026795	1	28.0	1	100	0	56	100	0	0	0	0.00
29027967--29028296	44	7.6	44	74	12	240	31	21	20	26	1.98
29027967--29028335	44	8.5	43	73	10	200	31	20	20	27	1.97
29028137--29028336	87	2.3	88	81	6	217	30	21	21	27	1.98
29029348--29029372	1	25.0	1	100	0	50	0	0	0	100	0.00
29031874--29031918	23	2.0	23	82	8	56	53	4	11	31	1.56
29038526--29038557	14	2.3	14	100	0	64	50	6	6	37	1.53
29040006--29040057	24	2.2	24	92	0	86	57	5	0	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29040288--29040349	23	2.8	22	85	4	79	50	1	1	46	1.20
29040325--29040364	16	2.5	16	91	0	62	47	2	7	42	1.45
29040375--29040632	59	4.4	59	99	0	507	39	4	8	46	1.56
29040614--29040641	9	3.1	9	100	0	56	32	0	10	57	1.33
29047593--29047817	41	5.5	41	94	2	384	28	19	27	24	1.99
29054894--29054978	44	1.9	44	95	0	152	35	8	20	36	1.82
29055335--29055600	41	6.5	41	92	1	430	29	18	27	24	1.98
29057924--29057986	32	2.0	32	100	0	126	31	23	15	28	1.96
29059547--29059598	22	2.5	21	85	11	72	25	5	0	69	1.10
29062915--29062984	36	1.9	36	94	0	122	21	37	31	10	1.86
29063008--29063051	20	2.2	20	84	8	54	65	0	4	29	1.12
29064376--29064581	91	2.3	88	85	8	274	34	20	10	34	1.87
29064702--29064813	9	12.0	9	67	17	52	61	1	4	32	1.26
29064947--29065029	36	2.2	38	85	6	107	38	1	2	57	1.19
29065081--29065287	88	2.3	89	82	5	242	35	8	17	39	1.79
29065507--29065536	2	15.0	2	100	0	60	50	0	0	50	1.00
29066063--29066113	23	2.2	23	89	6	77	62	0	1	35	1.06
29066769--29066849	31	2.6	31	84	0	108	55	12	11	20	1.67
29071110--29071178	30	2.4	29	73	20	72	43	7	4	44	1.51
29071959--29072011	21	2.5	21	80	14	65	35	7	26	30	1.84
29078881--29078940	15	4.1	15	77	16	54	56	0	1	41	1.09
29078882--29078921	15	2.6	16	88	4	55	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29078886--29078953	29	2.3	30	75	12	70	58	1	1	38	1.16
29088487--29088669	39	4.5	41	90	8	286	59	0	2	38	1.10
29088522--29088585	31	2.1	29	86	11	85	62	0	1	35	1.05
29089111--29089135	13	1.9	13	100	0	50	32	8	20	40	1.81
29091146--29091172	13	2.1	13	100	0	54	48	22	0	29	1.51
29101926--29101987	30	2.1	30	93	0	106	29	3	9	58	1.46
29104546--29104584	18	2.1	19	90	4	62	76	5	0	17	0.96
29105187--29106064	155	5.7	154	85	6	1115	51	7	10	30	1.62
29111304--29111350	23	2.0	23	84	8	60	59	14	2	23	1.46
29113313--29113786	251	1.9	251	96	0	876	22	33	17	26	1.96
29119905--29119952	23	2.1	23	92	0	78	27	6	10	56	1.57
29121606--29121804	42	4.7	42	80	3	195	45	17	20	16	1.85
29121620--29121799	21	8.6	21	68	11	75	46	18	19	16	1.85
29121641--29121794	84	1.8	84	87	2	229	44	18	20	16	1.86
29122332--29122390	30	1.9	31	82	6	75	37	15	1	45	1.56
29122257--29122595	169	2.0	169	94	0	597	43	19	4	32	1.71
29122663--29122728	33	2.0	33	96	0	123	56	19	0	24	1.43
29127708--29127732	6	4.2	6	100	0	50	52	48	0	0	1.00
29132337--29132419	39	2.2	38	82	6	96	13	33	27	25	1.93
29133431--29133490	20	2.9	21	71	14	52	23	1	26	48	1.60
29135426--29135470	19	2.3	19	88	3	63	73	2	2	22	1.05
29135416--29135473	11	5.5	11	75	19	52	70	1	1	25	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29135477--29135521	21	2.1	21	84	8	56	60	4	8	26	1.46
29135748--29135810	30	2.2	30	86	11	87	38	0	1	60	1.07
29135747--29135780	16	2.1	17	88	5	52	35	0	0	64	0.94
29135714--29135831	47	2.5	49	78	12	122	33	1	2	61	1.19
29135926--29136007	41	2.0	41	100	0	164	17	9	29	43	1.80
29135840--29136075	129	1.8	127	83	5	312	26	9	25	38	1.86
29137622--29137672	26	2.0	26	96	0	93	47	3	5	43	1.46
29137620--29137661	12	3.2	13	74	12	50	42	4	4	47	1.45
29142290--29142427	64	2.2	64	94	0	240	42	15	19	22	1.89
29146543--29146582	20	2.1	19	90	9	64	52	0	5	42	1.23
29148534--29148603	16	4.4	16	92	0	95	32	0	34	32	1.58
29148752--29148905	17	9.0	17	65	21	72	54	2	0	42	1.19
29148732--29149347	120	5.1	120	97	1	1108	52	4	1	42	1.28
29149205--29149269	18	4.2	16	72	18	57	60	0	1	38	1.07
29149232--29149269	18	2.2	17	90	4	58	63	0	2	34	1.09
29149345--29149383	20	2.0	20	84	0	51	43	2	12	41	1.56
29149637--29149704	17	3.9	17	70	24	61	27	5	7	58	1.48
29154216--29154246	15	2.1	14	94	5	53	35	22	0	41	1.54
29154573--29154635	29	2.2	29	88	0	90	15	30	31	22	1.95
29154918--29154966	24	2.0	24	96	0	89	59	18	4	18	1.53
29155622--29155654	15	2.2	15	94	0	57	39	6	15	39	1.72
29156808--29156948	40	3.6	39	78	8	126	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29165594--29165655	30	2.2	30	82	8	76	30	3	0	66	1.08
29165609--29165655	15	3.1	15	79	8	60	27	2	0	70	0.99
29170628--29170653	5	5.2	5	100	0	52	19	0	0	80	0.71
29172086--29172133	21	2.3	21	88	0	69	25	31	8	35	1.85
29182084--29182371	80	3.6	80	85	0	380	14	28	18	37	1.91
29182084--29182351	20	13.4	20	63	7	105	14	27	18	38	1.90
29182083--29182364	40	7.1	40	83	0	341	14	28	18	37	1.91
29187429--29187467	18	2.2	17	86	13	53	33	0	20	46	1.51
29187694--29187814	23	5.3	23	87	4	172	21	20	26	31	1.98
29187693--29187814	46	2.7	46	92	0	208	22	20	26	31	1.98
29194473--29194507	18	1.9	18	100	0	70	40	11	11	37	1.77
29199134--29199191	6	9.3	6	90	7	80	20	1	18	58	1.48
29200147--29200190	22	2.0	22	82	13	54	36	11	2	50	1.51
29207530--29207590	31	2.0	31	87	6	88	42	13	9	34	1.77
29208134--29208186	18	2.8	19	74	8	54	60	28	3	7	1.41
29209471--29209537	34	2.0	34	93	0	116	46	23	20	8	1.79
29221273--29221303	16	1.9	16	93	0	53	51	6	19	22	1.69
29222446--29222635	67	2.8	69	85	3	253	44	25	7	22	1.80
29223121--29223162	17	2.6	16	78	17	50	57	9	0	33	1.31
29223781--29223811	9	3.4	9	90	0	53	38	22	12	25	1.90
29225400--29225458	27	2.2	27	78	6	66	18	13	1	66	1.34
29230307--29230354	18	2.7	17	78	9	51	43	2	14	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29230670--29230751	25	3.3	25	74	6	69	37	13	14	34	1.85
29238248--29238315	9	7.4	9	82	9	75	25	8	25	41	1.84
29240525--29240706	24	7.6	24	74	7	109	31	40	10	17	1.84
29240531--29240706	48	3.7	48	82	3	203	31	39	11	18	1.86
29240531--29240691	72	2.2	72	83	2	198	30	39	11	19	1.86
29241910--29241939	14	2.1	15	93	6	53	6	10	0	83	0.81
29242057--29242140	39	2.2	39	97	0	159	32	27	4	35	1.78
29242817--29242853	13	2.9	12	88	11	56	81	2	16	0	0.81
29244653--29244698	18	2.6	18	78	0	65	23	13	8	54	1.66
29244860--29244892	15	2.2	15	89	10	50	39	27	6	27	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199