genome.fa.s18.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  154  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51009803--51009832	6	5.0	6	91	0	51	80	0	3	16	0.85
51016372--51016528	38	4.1	39	79	13	130	45	11	9	33	1.73
51016382--51016528	39	3.8	39	81	8	151	44	11	8	34	1.72
51022196--51022418	42	5.2	43	85	2	279	30	24	17	26	1.97
51022196--51022389	85	2.3	86	84	2	257	31	24	18	25	1.98
51022197--51022418	85	2.6	83	83	5	232	31	24	17	26	1.97
51027583--51027776	7	27.7	7	66	12	76	42	36	2	19	1.63
51027813--51027852	21	1.9	21	89	0	62	47	37	2	12	1.55
51028048--51028234	40	4.7	40	86	0	230	28	25	19	27	1.99
51028281--51028387	41	2.7	40	89	2	169	27	22	19	30	1.98
51028131--51028458	153	2.2	152	91	0	521	28	22	17	31	1.97
51028443--51028474	16	2.0	16	93	0	55	40	25	21	12	1.88
51028459--51028576	40	3.0	40	88	0	173	27	24	17	29	1.97
51040719--51040754	18	2.0	18	89	10	56	11	16	0	72	1.12
51044083--51044180	48	2.0	48	100	0	196	16	10	15	58	1.63
51044909--51045266	192	1.9	192	82	3	461	29	24	16	30	1.96
51046100--51046125	13	2.0	13	100	0	52	30	0	23	46	1.53
51047808--51047899	41	2.2	41	84	3	114	23	18	29	28	1.98
51049472--51049507	18	2.0	18	100	0	72	33	5	5	55	1.46
51054478--51054520	17	2.6	15	80	20	50	44	18	9	27	1.80
51056523--51056574	21	2.5	21	87	0	77	17	28	23	30	1.97
51060788--51060815	10	2.8	10	100	0	56	39	10	28	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51062665--51062723	3	20.3	3	77	10	52	33	1	0	64	1.04
51063976--51064038	23	3.0	20	81	11	72	15	20	23	39	1.91
51065133--51065191	17	3.4	17	81	6	64	37	20	16	25	1.93
51065376--51065466	18	5.1	18	78	5	94	48	19	4	27	1.68
51067617--51067684	28	2.4	27	75	18	68	29	23	23	23	1.99
51068356--51068394	20	2.0	20	85	10	53	41	7	12	38	1.72
51069979--51070099	28	4.3	28	80	7	147	32	22	23	22	1.98
51069979--51070100	57	2.2	57	82	8	153	32	22	22	22	1.98
51070460--51071398	27	34.6	27	83	5	837	20	18	20	40	1.92
51070480--51071398	81	11.3	80	83	4	982	20	18	20	40	1.91
51073008--51073232	40	5.7	40	87	5	287	25	27	22	24	2.00
51073008--51073232	119	1.9	120	84	6	305	25	27	22	24	2.00
51080999--51081223	119	1.9	120	84	6	305	25	27	22	24	2.00
51080999--51081223	40	5.7	40	86	6	296	25	27	22	24	2.00
51090213--51090273	28	2.2	27	88	8	88	49	16	0	34	1.46
51093692--51093724	7	4.7	7	100	0	66	72	0	0	27	0.85
51093638--51093731	41	2.3	41	78	14	106	63	0	1	35	1.01
51095278--51095370	47	2.0	47	95	0	168	20	22	25	31	1.98
51096390--51096511	64	2.0	62	81	14	144	47	14	9	28	1.75
51096584--51096642	19	3.3	17	79	11	73	40	8	13	37	1.75
51101151--51101390	50	4.8	50	82	2	270	27	20	28	23	1.99
51112886--51112975	46	2.0	46	91	4	146	22	5	11	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51114025--51114073	19	2.6	19	100	0	98	48	24	26	0	1.51
51115147--51115192	18	2.5	19	82	7	58	58	2	0	39	1.10
51115137--51115241	28	3.6	28	73	13	79	58	3	1	36	1.27
51116681--51116719	20	2.0	20	85	10	53	53	0	0	46	1.00
51118312--51118338	14	1.9	14	100	0	54	22	22	7	48	1.75
51121033--51121093	26	2.3	26	100	0	122	49	19	6	24	1.72
51121385--51121423	20	2.0	20	90	10	62	15	23	5	56	1.59
51121626--51121867	50	4.7	50	80	5	211	23	28	21	26	1.99
51122209--51122273	30	2.2	30	83	5	78	32	24	6	36	1.80
51124033--51124140	26	4.2	26	73	11	96	33	33	12	21	1.90
51124045--51124153	26	4.2	25	71	10	76	33	32	12	21	1.91
51125550--51125589	21	1.9	21	84	0	53	30	20	27	22	1.98
51126776--51126981	106	2.0	104	90	1	322	44	15	6	33	1.72
51130103--51130149	21	2.2	21	77	7	51	23	21	29	25	1.99
51130871--51131034	72	2.3	72	76	0	175	35	21	21	21	1.96
51131433--51131642	108	1.9	108	93	0	357	45	15	5	33	1.70
51136919--51136986	30	2.2	31	84	2	84	47	7	19	26	1.75
51139970--51140008	15	2.4	15	87	12	51	10	20	2	66	1.33
51140861--51140928	30	2.2	30	92	2	109	10	11	2	75	1.16
51140974--51141018	12	3.8	12	84	0	54	20	4	4	71	1.21
51144305--51144343	15	2.4	15	87	12	51	10	20	2	66	1.33
51145184--51145223	18	2.2	18	86	0	53	17	15	2	65	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51145197--51145261	28	2.2	30	89	5	98	10	9	3	76	1.11
51145307--51145362	12	4.7	12	81	14	62	12	3	5	78	1.05
51157653--51157697	22	2.1	21	83	4	54	44	0	8	46	1.34
51158977--51159041	29	2.2	29	81	18	80	47	1	0	50	1.10
51162502--51162772	135	2.0	135	97	0	515	33	28	14	23	1.94
51180438--51180514	27	2.7	27	80	9	75	6	12	6	74	1.22
51180506--51180534	13	2.2	13	100	0	58	13	0	6	79	0.93
51180495--51180534	12	3.2	12	86	6	53	12	5	5	77	1.09
51188173--51188250	37	2.1	36	88	2	111	25	32	17	24	1.97
51188368--51188681	47	6.7	47	94	3	535	29	29	9	31	1.88
51192090--51192272	40	4.6	40	80	6	194	24	26	22	26	2.00
51192578--51192656	29	2.7	29	86	5	106	27	32	15	24	1.95
51192638--51192740	43	2.4	43	100	0	206	26	35	15	22	1.94
51194595--51194673	37	2.1	37	90	0	122	25	31	18	24	1.98
51194791--51195134	47	7.2	47	96	3	618	30	29	8	31	1.87
51195108--51195150	17	2.6	17	96	3	79	37	25	0	37	1.56
51197933--51198004	37	1.9	38	83	8	94	48	27	8	15	1.73
51204330--51204385	27	2.0	29	82	6	71	55	1	0	42	1.10
51204330--51204371	22	1.9	22	85	0	57	52	2	0	45	1.13
51208340--51208429	41	2.2	41	86	4	119	22	21	7	48	1.75
51209392--51209444	6	8.8	6	97	0	97	16	30	0	52	1.44
51209431--51209534	45	2.4	45	80	7	108	29	24	4	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51213463--51213638	39	4.5	39	77	2	158	22	23	16	38	1.93
51221106--51221151	17	2.7	18	86	10	69	50	0	4	45	1.21
51221331--51221369	19	2.0	20	85	5	53	43	0	5	51	1.24
51221584--51221631	23	2.0	23	88	4	69	33	2	0	64	1.05
51223031--51223342	154	2.0	155	93	1	527	36	17	23	22	1.94
51223573--51223715	65	2.2	64	85	4	189	38	9	2	48	1.51
51226124--51226149	12	2.2	12	100	0	52	46	15	0	38	1.46
51228283--51228327	25	1.9	24	86	13	67	51	0	0	48	1.00
51228278--51228336	24	2.3	25	83	16	77	45	0	1	52	1.10
51228406--51228440	7	5.0	7	96	0	61	31	0	0	68	0.90
51229539--51229595	26	2.2	26	93	0	96	52	7	12	28	1.64
51229977--51230061	26	3.0	29	81	13	106	52	0	3	43	1.18
51229990--51230061	26	2.7	26	91	8	110	51	0	2	45	1.15
51230016--51230096	38	2.1	38	80	13	87	46	1	3	48	1.27
51230588--51230628	19	2.1	20	86	4	57	56	2	9	31	1.45
51232226--51232449	114	2.0	114	90	0	358	33	8	18	38	1.82
51234293--51234336	22	2.0	22	100	0	88	50	18	0	31	1.47
51234586--51234693	20	5.4	20	75	8	87	39	21	26	12	1.88
51237160--51237199	12	3.4	12	93	3	64	15	37	32	15	1.88
51237152--51237199	24	2.0	23	84	11	62	18	35	33	12	1.89
51238345--51238396	20	2.6	19	82	14	61	42	17	13	26	1.86
51238468--51238524	10	5.5	10	79	8	69	40	3	17	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51238464--51238524	21	2.9	21	97	0	113	40	4	16	37	1.70
51241886--51241967	38	2.0	41	86	11	116	51	8	0	40	1.33
51242479--51242557	27	2.9	28	74	9	83	18	24	32	24	1.97
51242611--51242667	22	2.5	22	77	13	62	68	1	26	3	1.15
51242612--51242661	18	2.6	18	81	9	55	70	2	26	2	1.09
51242622--51242663	21	2.0	22	90	4	68	69	2	28	0	1.01
51242611--51242668	24	2.6	22	76	17	57	67	1	27	3	1.17
51245634--51245700	27	2.4	27	92	2	116	53	8	0	37	1.32
51247694--51247737	16	2.8	15	83	10	61	59	2	2	36	1.23
51248011--51248149	22	5.8	24	78	15	139	54	13	0	30	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199