genome.fa.s18.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  29  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12128328--12128374	6	8.0	6	90	9	71	68	0	0	31	0.90
12128305--12128380	29	2.5	31	75	16	79	63	0	1	35	1.03
12128327--12128373	23	2.0	23	92	8	78	70	0	0	29	0.88
12134737--12134806	35	2.0	35	100	0	140	28	11	22	37	1.89
12135921--12135968	6	8.0	6	100	0	96	33	0	16	50	1.46
12136198--12136232	18	1.9	18	88	0	52	28	25	14	31	1.95
12143338--12143368	3	10.3	3	100	0	62	67	0	0	32	0.91
12153043--12153091	23	2.0	25	85	14	68	51	14	8	26	1.70
12156759--12156804	19	2.5	18	82	6	56	36	4	4	54	1.40
12156899--12156941	16	2.7	16	85	0	59	25	0	2	72	0.97
12164051--12164093	18	2.4	18	84	7	52	16	23	20	39	1.92
12169603--12169663	30	2.1	29	84	3	77	54	4	4	36	1.44
12177963--12177996	5	6.8	5	96	0	50	73	20	5	0	1.04
12182428--12182673	124	2.0	123	84	7	320	32	15	18	32	1.93
12197861--12197895	2	17.5	2	100	0	70	0	48	0	51	1.00
12199534--12199582	25	2.0	25	83	0	62	32	4	18	44	1.68
12208941--12208980	21	1.9	21	85	10	55	72	0	5	22	1.04
12223059--12223104	22	2.0	23	83	4	58	23	2	2	71	1.08
12229051--12229088	5	7.6	5	100	0	76	39	39	21	0	1.53
12235489--12235513	3	8.3	3	100	0	50	0	68	0	32	0.90
12238228--12238282	20	2.6	22	75	16	62	61	1	0	36	1.06
12238295--12238343	25	2.0	24	84	4	62	61	2	0	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12240658--12240691	15	2.3	15	90	10	52	32	0	2	64	1.08
12255712--12255780	31	2.2	31	86	0	93	49	5	2	42	1.41
12256061--12256116	22	2.5	23	82	2	69	51	1	1	44	1.22
12256092--12256131	16	2.5	16	91	0	62	47	2	7	42	1.45
12256142--12256311	59	2.9	59	97	0	313	40	5	9	44	1.61
12266873--12266946	29	2.5	29	86	8	96	22	13	14	48	1.79
12266898--12266971	29	2.5	29	82	4	85	25	13	13	47	1.79
12268324--12268400	31	2.5	31	78	0	91	46	12	1	38	1.51
12269998--12270193	105	1.9	105	89	0	302	43	9	9	36	1.70
12280493--12280523	6	5.2	6	96	0	53	16	19	35	29	1.93
12282667--12282699	3	11.0	3	100	0	66	0	33	0	66	0.92
12287117--12287171	24	2.3	24	93	0	92	16	27	21	34	1.95
12287117--12287199	24	3.4	25	85	6	91	15	25	21	37	1.93
12287210--12287269	24	2.5	24	91	0	102	23	30	18	28	1.98
12289520--12289818	41	7.3	41	92	0	481	22	28	20	28	1.98
12289520--12289818	123	2.4	123	96	0	553	22	28	20	28	1.98
12290030--12290066	19	1.9	19	94	0	65	45	18	0	35	1.50
12291612--12291651	5	8.2	5	88	5	55	35	0	5	60	1.19
12293427--12293565	46	3.0	46	90	0	215	28	25	9	35	1.87
12294040--12294151	46	2.4	46	92	0	188	32	8	30	29	1.86
12294500--12294593	46	2.0	46	89	0	143	32	27	6	32	1.82
12297079--12297170	37	2.5	37	98	0	175	26	18	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12297134--12297500	46	7.6	46	86	7	437	28	22	14	34	1.93
12297177--12297494	52	6.3	52	86	7	426	28	22	13	34	1.93
12297134--12297486	196	1.8	196	92	0	598	28	22	14	35	1.93
12297151--12297500	98	3.6	97	85	9	494	29	22	14	34	1.93
12301199--12301258	29	2.1	29	87	6	88	25	0	6	68	1.14
12302018--12302053	18	1.9	19	88	5	56	36	0	2	61	1.11
12316236--12316290	28	2.0	27	85	3	74	40	20	5	34	1.75
12316463--12316501	19	2.0	20	85	9	55	43	7	0	48	1.31
12324048--12324131	9	9.1	9	72	16	57	36	1	0	61	1.04
12324037--12324082	16	2.8	16	83	3	56	36	0	0	63	0.95
12324051--12324131	37	2.2	36	84	6	108	37	1	0	61	1.04
12324067--12324140	11	7.4	11	75	17	56	37	1	0	60	1.05
12326601--12326691	39	2.4	38	79	3	103	25	5	19	49	1.70
12337444--12337492	20	2.5	20	83	6	64	10	36	16	36	1.82
12337557--12337611	4	13.0	4	78	17	58	70	0	29	0	0.87
12337561--12337608	9	5.3	9	75	9	53	70	0	29	0	0.87
12338312--12338396	38	2.3	38	87	4	120	32	7	4	55	1.48
12338504--12338647	55	2.7	56	80	9	160	36	15	10	36	1.82
12338908--12338952	16	2.9	16	90	3	65	37	0	2	60	1.09
12338909--12338963	16	3.5	15	77	5	56	32	0	1	65	1.03
12342048--12342073	11	2.4	11	100	0	52	50	7	42	0	1.31
12342285--12342327	18	2.4	18	92	0	68	37	0	9	53	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12342287--12342331	3	15.0	3	80	0	54	35	0	6	57	1.25
12342472--12342543	24	2.9	24	78	15	67	44	0	22	33	1.53
12342687--12342782	39	2.5	39	80	6	108	20	23	28	27	1.99
12349264--12349289	11	2.4	11	100	0	52	50	7	42	0	1.31
12349501--12349543	18	2.4	18	92	0	68	37	0	9	53	1.33
12349503--12349547	3	15.0	3	80	0	54	35	0	6	57	1.25
12349688--12349759	24	2.9	24	78	15	67	44	0	22	33	1.53
12367551--12367617	31	2.2	31	86	0	89	43	11	14	29	1.82
12367558--12367626	31	2.2	31	89	0	102	42	11	15	30	1.83
12381792--12381849	28	2.1	26	82	17	73	27	1	8	62	1.35
12382217--12382241	6	4.2	6	100	0	50	16	0	32	52	1.44
12384252--12384303	3	17.3	3	87	0	68	57	0	7	34	1.27
12392260--12392430	95	1.8	94	85	6	240	38	23	13	24	1.91
12393585--12393609	13	1.9	13	100	0	50	60	0	0	40	0.97
12396827--12396873	24	2.0	24	95	0	85	36	12	31	19	1.89
12406661--12406701	21	2.0	21	85	0	55	31	19	4	43	1.72
12411964--12412022	29	2.0	30	86	3	84	49	16	5	28	1.67
12414248--12414290	19	2.3	18	80	11	50	55	0	4	39	1.20
12414903--12414946	4	11.0	4	95	0	79	25	2	25	47	1.63
12415691--12415730	18	2.2	18	86	8	55	52	5	2	40	1.37
12419136--12419190	24	2.3	24	83	0	65	32	25	27	14	1.95
12419725--12419766	21	2.0	20	86	4	57	40	19	2	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12419725--12419766	5	8.2	5	84	5	57	40	19	2	38	1.64
12425883--12426017	9	14.1	9	71	14	56	62	0	1	35	1.04
12425883--12426019	10	14.2	10	70	22	64	62	0	1	35	1.04
12425882--12426019	39	3.5	38	86	6	179	62	0	1	36	1.04
12425899--12425958	28	2.1	29	93	6	106	68	0	1	30	0.99
12429932--12429976	18	2.5	19	78	7	58	53	0	0	46	1.00
12430465--12430522	26	2.2	27	78	3	64	20	18	32	27	1.97
12431731--12431764	17	1.9	18	88	5	52	35	2	0	61	1.11
12435709--12435758	25	2.0	24	84	3	64	68	4	0	28	1.08
12436795--12436823	2	14.5	2	100	0	58	0	48	0	51	1.00
12444609--12444738	41	3.2	41	82	2	145	19	23	28	29	1.98
12449685--12449728	22	1.9	22	86	9	61	56	4	0	38	1.20
12450506--12450949	50	8.7	50	84	7	531	19	30	23	26	1.98
12450498--12450949	100	4.4	104	87	8	635	20	30	23	26	1.98
12450498--12450942	204	2.2	205	92	4	756	20	30	23	25	1.98
12456498--12456523	13	2.0	13	100	0	52	30	0	7	61	1.24
12459294--12459351	30	1.9	30	89	0	89	41	3	24	31	1.71
12459562--12459593	13	2.5	13	94	0	55	31	0	12	56	1.37
12459688--12459935	50	4.8	51	84	5	272	26	24	28	20	1.99
12459688--12459936	101	2.4	102	86	8	337	26	24	28	21	1.99
12464122--12464153	13	2.5	13	94	0	55	31	0	12	56	1.37
12464248--12464445	50	3.8	50	88	4	261	25	23	30	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12464248--12464438	106	1.9	103	89	6	298	25	23	30	20	1.99
12468092--12468176	18	4.7	18	85	0	116	29	23	14	32	1.94
12468092--12468176	36	2.4	36	89	0	134	29	23	14	32	1.94
12482704--12482747	22	2.0	21	87	12	63	40	0	2	56	1.11
12483822--12483880	21	2.9	21	87	5	86	35	1	8	54	1.41
12486107--12486142	18	1.9	18	88	5	54	58	2	0	38	1.13
12501980--12502077	41	2.4	41	98	0	187	26	21	32	19	1.97
12501980--12502092	41	2.8	41	93	0	145	29	21	29	20	1.98
12505334--12505371	19	2.0	19	100	0	76	26	31	5	36	1.79
12509160--12509199	20	2.0	20	95	0	71	42	5	17	35	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199