genome.fa.s18.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  140  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46624710--46624734	8	3.1	8	100	0	50	36	0	0	64	0.94
46624884--46624930	15	3.3	14	82	11	60	76	0	4	19	0.95
46639604--46639736	51	2.6	51	80	0	131	41	9	16	32	1.81
46644040--46644070	14	2.2	14	100	0	62	6	6	22	64	1.40
46646728--46646976	50	4.8	50	85	4	284	20	29	24	26	1.99
46646727--46646976	100	2.4	104	88	6	357	20	29	24	26	1.99
46647071--46647102	13	2.5	13	94	0	55	56	12	0	31	1.37
46647314--46647371	30	1.9	30	89	0	89	31	24	3	41	1.71
46654321--46654569	50	4.8	50	85	4	284	20	29	24	26	1.99
46654320--46654569	100	2.4	104	88	6	357	20	29	24	26	1.99
46654664--46654695	13	2.5	13	94	0	55	56	12	0	31	1.37
46654907--46654964	30	1.9	30	89	0	89	31	24	3	41	1.71
46659254--46659415	44	3.5	48	87	10	214	43	32	3	20	1.70
46660085--46660157	9	8.2	9	84	3	94	39	9	16	34	1.81
46660085--46660157	27	2.7	27	89	2	112	39	9	16	34	1.81
46660122--46660166	8	5.4	8	84	7	54	35	11	17	35	1.86
46660329--46660353	12	2.1	12	100	0	50	16	24	36	24	1.94
46663700--46663732	14	2.3	15	89	5	50	27	3	0	69	1.03
46665299--46665451	23	6.5	24	73	11	104	39	19	13	28	1.89
46665299--46665452	71	2.2	69	82	6	177	39	19	12	27	1.89
46665473--46665643	23	7.3	23	74	3	171	41	14	18	25	1.88
46665460--46665643	47	3.9	47	98	0	359	41	14	17	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46665460--46665627	24	7.1	24	74	4	171	41	15	17	25	1.89
46666504--46666622	43	2.8	43	83	7	161	28	26	18	26	1.98
46667479--46667535	28	2.0	28	90	6	89	38	5	0	56	1.22
46672289--46672363	25	3.0	25	82	0	87	24	26	18	30	1.98
46674384--46674525	42	3.4	42	80	5	153	42	19	21	16	1.89
46674529--46674680	42	3.7	40	80	7	126	42	17	23	17	1.89
46674426--46674628	103	2.0	103	83	1	255	42	19	21	17	1.89
46674380--46674668	145	2.0	145	93	0	488	42	18	22	16	1.89
46674392--46674693	21	14.5	21	63	8	69	42	18	21	17	1.89
46674569--46674682	42	2.7	42	86	2	149	42	18	22	15	1.88
46681841--46681939	46	2.2	43	82	12	119	32	25	19	23	1.97
46681945--46682135	51	3.8	51	80	6	244	28	27	18	25	1.98
46681943--46682127	101	1.8	102	91	5	313	29	27	18	24	1.98
46681938--46682161	101	2.2	102	84	4	292	28	28	17	25	1.97
46687849--46687874	6	4.3	6	100	0	52	34	0	15	50	1.45
46688219--46688361	41	3.5	42	88	5	188	28	22	26	22	1.99
46692675--46692754	32	2.5	31	78	13	83	35	10	15	40	1.80
46693160--46693189	12	2.5	12	88	0	51	40	43	0	16	1.48
46694120--46694180	9	6.7	9	72	10	52	34	3	1	60	1.23
46702702--46702736	13	2.7	13	81	0	52	34	5	25	34	1.80
46703201--46703230	15	2.0	15	100	0	60	46	20	13	20	1.83
46705836--46705949	46	2.5	44	82	13	124	64	1	0	33	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46705923--46705985	19	3.3	19	72	2	63	58	3	3	34	1.30
46706177--46706202	10	2.6	10	100	0	52	46	0	0	53	1.00
46706118--46706246	56	2.3	58	81	8	158	32	4	3	59	1.33
46710100--46710215	38	3.0	38	83	2	142	35	8	12	43	1.74
46715309--46715342	15	2.3	15	100	0	68	17	32	0	50	1.47
46716133--46716195	26	2.4	26	94	0	108	36	19	6	38	1.77
46717769--46717798	15	2.0	15	93	0	51	36	36	0	26	1.57
46717894--46717981	31	2.8	31	87	3	124	52	15	1	30	1.51
46718168--46718211	18	2.6	18	89	7	65	61	13	0	25	1.32
46718048--46718181	5	26.8	5	100	0	268	60	19	0	20	1.36
46726952--46727078	35	3.6	35	85	1	155	15	10	33	40	1.81
46727524--46727562	18	2.2	18	90	0	60	41	2	17	38	1.64
46729951--46730152	27	7.4	27	85	4	246	30	27	14	27	1.95
46735668--46735740	37	1.9	38	83	8	96	32	20	1	45	1.60
46735728--46735771	23	1.9	22	82	17	54	38	22	0	38	1.55
46735832--46735939	46	2.4	43	82	13	130	35	22	17	25	1.95
46735945--46736129	51	3.7	50	75	4	183	30	25	17	26	1.98
46735943--46736127	101	1.8	102	88	3	284	30	24	17	27	1.97
46737346--46737586	68	3.5	67	72	6	205	29	25	19	26	1.99
46737307--46737972	138	4.9	137	78	7	572	31	23	18	27	1.97
46738082--46738215	51	2.6	52	82	9	152	35	10	11	41	1.76
46738089--46738217	17	7.6	17	76	6	118	34	10	12	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46738250--46738289	18	2.2	19	86	4	55	37	12	2	47	1.55
46741181--46741225	18	2.4	18	81	3	54	33	15	2	48	1.57
46742464--46742496	16	2.0	17	88	5	50	63	9	0	27	1.24
46748010--46748062	18	2.9	18	82	0	70	41	15	0	43	1.46
46753743--46753776	10	3.4	10	83	0	50	85	0	2	11	0.71
46755394--46755427	6	5.8	6	93	6	52	73	0	0	26	0.83
46771027--46771198	72	2.4	72	88	4	240	26	27	29	15	1.96
46774784--46774843	26	2.3	27	75	18	65	28	11	10	50	1.71
46775019--46775066	20	2.6	19	81	15	57	18	8	4	68	1.31
46775953--46776005	18	2.9	18	75	11	54	52	0	9	37	1.34
46786276--46786372	33	2.8	35	72	20	89	45	3	1	50	1.24
46793105--46793134	15	1.9	16	93	6	53	76	3	13	6	1.11
46797935--46797975	20	2.0	20	100	0	82	14	29	9	46	1.77
46806999--46807037	20	2.0	20	90	10	62	15	23	5	56	1.59
46807302--46807434	50	2.7	50	82	2	142	20	27	23	29	1.99
46810266--46810290	13	1.9	13	100	0	50	52	16	0	32	1.44
46811128--46811379	35	7.2	35	85	1	326	38	28	14	18	1.90
46828188--46828275	43	2.1	42	97	2	167	4	47	34	13	1.63
46828298--46828482	81	2.3	80	85	6	239	38	2	0	58	1.12
46828298--46828482	40	4.5	41	89	5	243	38	2	0	58	1.12
46828362--46828479	9	12.0	9	71	19	60	37	1	0	61	1.07
46828380--46828482	51	2.0	53	96	3	192	39	1	0	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46828299--46828476	20	8.7	21	64	20	74	37	2	0	60	1.12
46829002--46829112	26	4.2	26	74	5	89	45	26	9	19	1.80
46829002--46829112	52	2.1	55	81	8	131	45	26	9	19	1.80
46836500--46836580	26	3.1	26	81	1	90	38	25	14	20	1.92
46847928--46848125	51	3.9	51	80	7	242	29	27	18	24	1.98
46847925--46848113	101	1.9	100	87	6	276	29	27	18	24	1.98
46850989--46851035	20	2.2	21	92	7	78	34	19	6	40	1.77
46851005--46851048	20	2.2	20	83	0	52	29	20	2	47	1.62
46851476--46851529	26	2.1	26	92	0	90	29	14	9	46	1.76
46851773--46851863	44	2.2	42	84	11	132	18	27	3	50	1.62
46851783--46851870	44	2.0	44	100	0	176	15	27	2	54	1.53
46856216--46856485	65	4.2	65	83	2	267	37	14	14	33	1.87
46861915--46861953	19	2.0	21	85	10	55	64	7	5	23	1.40
46870832--46871551	358	2.0	359	98	0	1388	22	22	18	36	1.95
46893005--46893049	20	2.2	20	88	7	65	31	0	2	66	1.04
46893013--46893060	20	2.3	20	75	3	51	41	0	2	56	1.11
46897901--46897944	17	2.5	19	82	14	58	31	0	2	65	1.05
46897903--46897938	18	2.0	18	89	10	56	30	0	0	69	0.89
46898605--46898643	17	2.4	17	87	8	55	12	7	2	76	1.09
46898722--46898758	13	2.7	14	80	20	51	21	5	8	64	1.40
46898765--46898796	15	2.1	15	94	0	55	18	0	15	65	1.27
46905152--46905184	14	2.3	15	89	5	50	27	15	33	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46906860--46907217	100	3.6	100	83	1	448	30	21	22	25	1.98
46907425--46907584	44	3.7	43	76	15	125	26	20	26	26	1.99
46909178--46909221	17	2.5	19	82	14	58	31	0	2	65	1.05
46909180--46909215	18	2.0	18	89	10	56	30	0	0	69	0.89
46909228--46909262	18	2.0	17	88	5	52	20	2	0	77	0.90
46909791--46909865	29	2.5	28	81	12	80	24	14	14	46	1.82
46914620--46914680	30	2.0	31	100	0	108	21	32	6	39	1.79
46927729--46927850	23	5.3	23	87	3	183	31	27	19	22	1.98
46930979--46931213	57	4.1	57	79	4	222	25	25	15	33	1.95
46931009--46931213	29	7.2	28	69	9	110	24	24	16	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199