genome.fa.s18.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  124  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41554238--41554369	52	2.5	52	86	11	173	62	0	3	34	1.10
41554626--41554664	14	2.8	14	84	0	51	25	0	41	33	1.56
41555134--41555160	13	2.1	13	100	0	54	55	7	7	29	1.55
41555251--41555278	6	4.7	6	100	0	56	0	0	14	85	0.59
41555797--41555853	30	1.9	30	88	0	87	47	17	22	12	1.81
41558850--41558940	43	2.1	43	86	6	123	35	9	9	45	1.71
41559210--41559441	43	5.4	42	83	8	240	21	17	30	30	1.96
41559212--41559441	86	2.7	85	82	5	284	21	17	30	30	1.96
41559534--41559578	22	2.1	21	83	4	54	46	24	15	13	1.82
41566153--41566205	5	10.8	5	95	4	99	81	0	18	0	0.70
41567347--41567387	21	1.9	22	90	5	66	53	0	2	43	1.13
41567344--41567397	21	2.6	21	79	5	65	53	0	5	40	1.24
41572018--41572074	26	2.2	25	79	11	62	15	24	22	36	1.94
41572025--41572211	24	7.6	25	71	9	89	17	24	21	36	1.94
41574059--41574084	12	2.2	12	100	0	52	23	34	0	42	1.54
41574273--41574322	4	12.5	4	86	0	73	48	2	28	22	1.62
41576603--41576641	20	1.9	21	84	5	53	58	12	2	25	1.47
41577160--41577194	15	2.4	15	90	4	54	48	0	8	42	1.33
41581847--41581898	26	2.0	26	96	0	95	38	9	7	44	1.66
41584143--41584230	26	3.4	25	78	12	79	39	3	2	54	1.30
41584421--41584459	15	2.6	16	84	12	55	23	7	7	61	1.49
41596317--41596872	217	2.6	217	91	0	878	28	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41596323--41596868	44	12.7	43	70	11	246	28	18	23	29	1.98
41598347--41598430	24	3.3	24	77	14	71	39	3	3	53	1.36
41602583--41602634	26	2.0	26	92	0	86	36	13	9	40	1.77
41604364--41604415	26	2.0	26	92	0	86	36	9	9	44	1.70
41606465--41606516	26	2.0	26	96	0	95	36	13	7	42	1.73
41607275--41607326	26	2.0	26	92	0	86	36	11	9	42	1.74
41606027--41607651	810	2.0	810	90	0	2574	33	17	15	33	1.91
41609363--41609414	26	2.0	26	100	0	104	38	11	7	42	1.70
41611457--41611506	25	2.0	25	96	0	91	38	12	8	42	1.71
41614148--41614292	41	3.5	41	95	1	247	27	19	29	23	1.98
41615708--41615759	26	2.0	26	92	0	86	40	9	9	40	1.71
41617823--41617874	26	2.0	26	96	0	95	38	9	7	44	1.66
41619887--41619937	26	2.0	26	88	0	75	35	11	5	47	1.65
41623044--41623221	27	6.6	27	85	3	205	29	29	14	26	1.95
41623044--41623221	54	3.3	54	85	3	232	29	29	14	26	1.95
41623065--41623220	81	1.9	82	88	3	235	29	29	14	26	1.95
41631303--41631480	27	6.6	27	85	3	205	29	29	14	26	1.95
41631303--41631480	54	3.3	54	85	3	232	29	29	14	26	1.95
41631324--41631479	81	1.9	82	88	3	235	29	29	14	26	1.95
41633641--41633692	26	2.0	26	88	0	77	34	11	9	44	1.73
41635759--41635810	26	2.0	26	88	0	77	36	13	7	42	1.73
41639810--41639863	26	2.1	26	100	0	108	40	11	7	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41643546--41643624	37	2.1	37	88	4	115	25	30	18	25	1.98
41643743--41644091	48	7.3	47	90	4	513	29	29	8	32	1.87
41647340--41647369	15	2.1	14	93	6	51	6	20	0	73	1.05
41649734--41649918	79	2.3	82	82	9	222	24	27	22	25	2.00
41649715--41649918	40	5.1	40	80	8	220	24	26	22	25	2.00
41652598--41652653	10	5.5	10	81	10	60	8	1	5	83	0.85
41652606--41652653	11	4.5	11	82	10	64	10	0	6	83	0.81
41652607--41652653	20	2.3	20	92	0	76	10	0	6	82	0.82
41653761--41653827	31	2.1	32	81	13	77	31	29	11	26	1.92
41654101--41654159	30	2.0	30	83	6	75	28	15	25	30	1.96
41682454--41682498	21	2.3	18	85	11	54	17	26	0	55	1.42
41682527--41682609	38	2.1	41	88	6	127	10	21	4	62	1.46
41683525--41683602	29	2.5	33	82	18	103	11	11	2	74	1.17
41683546--41683597	14	3.5	14	70	14	50	7	11	1	78	1.02
41683525--41683596	30	2.4	30	84	13	96	9	11	2	76	1.12
41683642--41683684	12	3.6	12	90	0	59	16	2	6	74	1.14
41683642--41683694	12	4.4	12	86	6	54	15	1	5	77	1.04
41684362--41684393	14	2.3	14	100	0	64	84	0	0	15	0.63
41691751--41691802	23	2.3	22	75	21	54	9	23	1	65	1.32
41702052--41702089	10	3.7	10	89	3	58	71	10	0	18	1.14
41702566--41702653	46	1.9	46	95	0	158	30	19	22	27	1.98
41705828--41705867	13	2.9	14	81	7	55	72	0	22	5	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41705823--41705883	21	2.9	21	77	15	63	72	0	21	6	1.07
41705850--41705895	21	2.1	22	84	4	58	67	0	23	8	1.18
41705929--41705995	33	1.9	33	82	8	80	47	8	31	11	1.71
41708246--41708468	119	1.9	120	84	6	301	25	27	22	24	2.00
41708244--41708468	40	5.7	40	85	6	287	25	28	22	24	2.00
41716219--41716399	39	4.6	39	76	14	167	25	28	20	24	1.99
41716219--41716401	79	2.3	79	80	10	205	25	28	21	24	1.99
41723589--41723742	77	2.0	77	87	5	222	26	29	21	22	1.99
41723587--41723801	40	5.4	40	80	9	221	25	27	21	24	1.99
41730696--41730721	6	4.3	6	100	0	52	84	0	0	15	0.62
41734809--41734845	17	2.2	17	100	0	74	16	24	16	43	1.87
41738922--41738962	21	2.0	21	85	0	55	7	24	2	65	1.30
41746064--41746098	13	2.7	13	90	0	52	45	0	11	42	1.40
41746320--41746383	23	2.8	23	92	4	103	23	12	20	43	1.85
41747245--41747317	29	2.5	29	90	0	119	30	9	13	46	1.75
41753246--41753290	23	1.9	24	82	13	58	62	2	24	11	1.40
41760369--41760405	13	2.8	13	91	0	56	70	8	0	21	1.13
41763115--41763299	79	2.3	82	81	7	220	25	27	22	24	2.00
41763096--41763299	40	5.1	40	80	8	220	25	27	22	25	2.00
41771022--41771206	40	4.6	40	79	12	175	24	27	22	25	2.00
41771050--41771153	39	2.6	40	90	1	165	25	28	21	25	1.99
41781549--41781605	20	2.9	19	81	2	69	33	17	24	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41783332--41783358	13	2.1	13	100	0	54	62	0	7	29	1.22
41785534--41785576	20	2.2	20	86	0	59	53	2	30	13	1.53
41793520--41793572	18	3.1	17	79	17	56	67	0	22	9	1.19
41793522--41793573	17	3.0	17	76	20	54	65	0	25	9	1.23
41793573--41793621	17	2.9	16	84	6	53	57	6	26	10	1.55
41800437--41800505	33	2.2	32	94	5	122	39	26	11	23	1.88
41802850--41802876	14	1.9	14	100	0	54	33	22	14	29	1.94
41815513--41815563	23	2.3	21	78	18	50	9	23	1	64	1.34
41818456--41818507	23	2.3	22	75	21	54	9	23	1	65	1.32
41821431--41821500	29	2.3	29	85	9	88	11	24	1	62	1.36
41823785--41823819	11	3.4	11	88	11	56	77	0	0	22	0.78
41826444--41826488	24	1.9	24	95	4	83	48	13	17	20	1.80
41826677--41826713	16	2.2	17	86	13	51	72	0	2	24	0.97
41839904--41840083	27	6.6	27	82	8	175	30	28	14	26	1.95
41839906--41840083	54	3.2	55	80	9	202	30	28	14	26	1.95
41842236--41842286	26	2.0	26	88	3	77	35	11	9	43	1.75
41859159--41859342	40	4.7	40	81	7	207	25	26	22	25	2.00
41859159--41859342	79	2.3	82	81	8	211	25	26	22	25	2.00
41865867--41865917	26	2.0	26	92	0	84	45	5	11	37	1.65
41867688--41867738	26	2.0	26	96	0	93	45	3	11	39	1.59
41869528--41869578	26	2.0	26	96	0	93	45	3	11	39	1.59
41873656--41873695	22	1.9	20	90	10	62	42	5	10	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41875671--41875721	26	2.0	26	100	0	102	43	5	11	39	1.66
41879232--41879283	26	2.0	26	92	0	86	40	5	13	40	1.68
41881679--41881801	28	4.4	28	92	2	185	26	12	27	33	1.92
41881704--41881833	28	4.6	27	88	4	152	28	13	24	33	1.94
41883550--41883813	1	264.0	1	90	0	348	92	3	1	3	0.50
41884610--41884671	25	2.6	24	85	12	83	46	6	8	38	1.59
41886696--41886742	24	1.9	25	95	4	87	46	8	6	38	1.60
41888756--41888813	23	2.6	23	86	8	84	46	6	10	36	1.65
41890838--41890889	26	2.0	26	96	0	95	44	7	9	38	1.66
41895655--41895705	25	2.0	26	92	3	86	39	9	7	43	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199