genome.fa.s18.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  23  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9462786--9462844	21	2.8	21	78	0	64	18	0	22	59	1.38
9462780--9462863	28	2.9	28	79	13	82	16	1	22	59	1.44
9462784--9462851	21	3.2	21	70	15	59	16	0	23	60	1.36
9462813--9462893	30	2.7	30	81	11	94	16	2	23	58	1.50
9462835--9462878	23	1.9	23	86	9	63	13	2	25	59	1.46
9462990--9463040	21	2.4	21	90	0	84	19	0	25	54	1.44
9463039--9463070	16	2.0	16	93	0	55	12	0	21	65	1.25
9467877--9467925	25	2.0	24	92	4	80	55	2	0	42	1.11
9474215--9474635	222	1.9	222	96	0	788	32	15	17	34	1.92
9480094--9480146	27	1.9	28	92	3	90	30	11	7	50	1.65
9489069--9489106	20	1.9	20	88	0	58	15	2	39	42	1.61
9494364--9494408	24	1.9	24	95	4	83	22	8	13	55	1.65
9494702--9495075	190	2.0	190	94	0	658	28	12	16	41	1.85
9496033--9496238	105	2.0	103	89	5	317	48	12	15	23	1.79
9497226--9497614	190	2.0	190	97	0	742	26	20	13	39	1.89
9506533--9506665	63	2.1	63	91	0	212	20	27	21	30	1.98
9533287--9533312	12	2.2	12	100	0	52	92	0	7	0	0.39
9535476--9535534	29	2.0	30	90	3	93	50	6	3	38	1.45
9535557--9535655	50	2.0	50	100	0	198	43	6	8	42	1.59
9540623--9540656	18	1.9	17	94	5	59	35	0	2	61	1.11
9544087--9544115	14	2.1	14	100	0	58	20	13	27	37	1.91
9552187--9552226	6	6.5	6	85	2	53	2	0	20	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9570029--9570070	17	2.3	18	80	12	50	64	2	0	33	1.07
9571207--9571240	12	3.1	11	88	12	52	91	8	0	0	0.43
9583657--9583706	26	1.9	26	87	0	73	38	10	20	32	1.85
9590734--9590761	4	7.0	4	100	0	56	25	0	25	50	1.50
9591674--9591801	63	2.0	63	100	0	256	37	17	9	35	1.82
9612424--9612471	11	4.1	11	77	15	51	0	8	6	85	0.74
9612425--9612458	6	5.8	6	96	3	61	0	11	0	88	0.52
9617419--9617468	15	3.0	18	72	19	54	32	0	0	68	0.90
9617461--9617503	14	2.8	15	82	13	52	34	0	2	62	1.08
9626708--9626732	4	6.2	4	100	0	50	28	0	0	72	0.86
9627802--9627851	15	3.0	18	72	19	54	32	0	0	68	0.90
9627844--9627886	14	2.8	15	82	13	52	34	0	2	62	1.08
9637085--9637109	4	6.2	4	100	0	50	28	0	0	72	0.86
9638177--9638226	15	3.0	18	72	19	54	32	0	0	68	0.90
9638219--9638261	14	2.8	15	82	13	52	34	0	2	62	1.08
9651545--9651569	8	3.1	8	100	0	50	64	0	0	36	0.94
9656328--9656656	164	2.0	164	98	0	640	35	10	13	39	1.81
9662813--9662878	33	2.0	33	100	0	132	24	18	18	39	1.92
9666917--9667020	33	3.1	33	74	14	97	47	1	0	50	1.12
9666971--9667027	30	1.9	30	82	13	73	47	3	0	49	1.18
9681750--9681785	17	2.2	17	90	5	56	52	2	2	41	1.30
9682484--9682518	13	2.7	13	100	0	70	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9683782--9683872	45	2.0	44	85	2	119	32	5	27	34	1.80
9684116--9684165	26	2.0	25	84	4	64	52	2	8	38	1.43
9687501--9687683	41	4.5	41	84	4	140	21	26	20	31	1.98
9687500--9687697	82	2.4	82	84	5	240	22	26	20	30	1.98
9687536--9687697	41	4.0	41	90	1	236	22	27	20	29	1.99
9687542--9687715	82	2.1	82	85	6	228	22	26	20	29	1.99
9689347--9689371	13	1.9	13	100	0	50	68	24	0	8	1.16
9690042--9690080	19	2.1	19	90	0	60	46	10	43	0	1.37
9703768--9703802	16	2.1	17	89	5	54	40	5	5	48	1.51
9711194--9711276	34	2.4	34	87	0	112	49	8	9	32	1.66
9732682--9732782	29	3.9	27	74	12	95	34	1	2	60	1.23
9734308--9734429	22	4.9	26	80	17	152	53	12	0	33	1.44
9734255--9734426	49	3.6	49	84	5	226	52	13	1	31	1.48
9734462--9734518	27	2.1	27	90	0	87	35	1	14	49	1.53
9734720--9734783	8	7.4	8	73	16	56	35	3	15	45	1.62
9734923--9734963	19	2.2	19	90	0	64	51	14	0	34	1.43
9735076--9735113	20	1.9	20	84	10	51	47	0	0	52	1.00
9751453--9751483	16	2.0	16	93	6	55	38	0	0	61	0.96
9751814--9751843	13	2.3	13	94	0	51	56	10	0	33	1.32
9753782--9753816	2	17.5	2	100	0	70	51	0	48	0	1.00
9759073--9759117	22	2.0	22	82	0	54	57	6	0	35	1.25
9759613--9759650	17	2.1	19	85	9	53	55	0	5	39	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9766445--9766497	16	3.2	16	94	5	97	24	0	37	37	1.56
9766478--9766568	45	2.0	45	85	2	121	27	6	28	37	1.82
9766713--9766767	15	3.4	16	80	16	53	54	1	0	43	1.10
9766719--9766767	16	2.9	18	80	20	61	55	0	0	44	0.99
9766949--9767000	15	3.6	15	80	12	56	53	1	0	44	1.11
9767084--9767124	16	2.5	17	85	14	52	53	0	2	43	1.13
9766716--9767125	120	3.4	120	94	2	702	50	5	1	42	1.36
9772816--9772843	5	5.6	5	100	0	56	39	0	0	60	0.97
9784528--9784571	21	2.1	21	83	8	54	45	0	6	47	1.29
9791607--9791631	6	4.2	6	100	0	50	64	36	0	0	0.94
9791634--9791668	15	2.2	16	90	5	54	0	34	11	54	1.37
9797401--9797428	3	9.3	3	100	0	56	0	67	0	32	0.91
9814435--9814472	18	2.1	18	95	0	67	36	21	13	28	1.91
9824394--9824439	23	2.0	23	100	0	92	56	17	4	21	1.58
9828436--9828484	23	2.1	22	82	14	55	26	4	16	53	1.61
9828832--9828871	16	2.6	16	84	7	57	27	7	0	65	1.20
9834556--9834798	121	2.0	121	98	0	468	32	23	14	29	1.94
9836354--9836378	13	1.9	13	100	0	50	16	0	0	84	0.63
9836346--9836420	30	2.4	30	83	16	100	28	1	0	70	0.95
9836710--9836772	31	2.0	31	96	0	117	44	25	1	28	1.63
9839128--9839169	17	2.5	17	81	11	52	28	0	2	69	1.01
9842528--9842559	16	1.9	17	93	6	57	37	21	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9842720--9842874	43	3.7	43	80	8	167	29	27	19	23	1.98
9842720--9842874	84	1.8	84	83	5	206	29	27	19	23	1.98
9846936--9846972	18	2.1	18	90	5	58	35	8	0	56	1.29
9847666--9847957	128	2.3	128	90	0	460	25	28	8	37	1.85
9849806--9849864	20	3.1	19	78	14	68	64	1	0	33	1.04
9849809--9849865	18	3.1	18	75	14	55	66	1	0	31	1.02
9850118--9850180	22	2.9	22	76	19	60	41	3	0	55	1.16
9852652--9852697	18	2.8	18	84	15	64	0	30	41	28	1.56
9855570--9855732	39	4.3	37	69	16	93	32	4	12	50	1.59
9855597--9855740	39	3.8	38	67	16	102	29	4	13	51	1.62
9860130--9860165	8	4.2	8	86	13	54	27	2	0	69	1.02
9859900--9860817	314	3.0	306	84	7	1144	31	9	7	51	1.63
9859900--9860817	156	5.9	155	86	6	1115	31	9	7	51	1.63
9860751--9860786	16	2.1	18	90	10	58	22	5	5	66	1.34
9861060--9861114	26	2.1	27	82	3	67	56	9	3	30	1.48
9861231--9861282	5	10.4	5	77	8	52	0	32	0	67	0.91
9861233--9861290	10	5.3	10	75	18	53	0	29	0	70	0.87
9861220--9861302	35	2.3	36	91	4	141	1	32	0	66	1.00
9861236--9861284	25	2.0	25	91	0	80	0	30	0	69	0.89
9861236--9861308	25	3.0	25	80	7	71	1	31	0	67	1.00
9865408--9865449	10	4.2	10	76	11	50	23	0	4	71	1.05
9865401--9865449	19	2.4	21	83	10	57	20	0	6	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9870986--9871039	26	2.1	26	89	6	83	48	0	5	46	1.25
9874543--9874579	14	2.6	14	95	0	65	16	59	8	16	1.59
9875889--9875919	8	3.9	8	91	0	53	61	0	9	29	1.28
9875995--9876046	25	2.1	25	96	0	95	40	3	9	46	1.55
9877164--9877303	66	2.1	66	93	0	244	45	13	12	28	1.79
9878404--9878633	105	2.3	99	79	7	221	33	16	24	25	1.96
9889565--9889714	75	2.0	75	100	0	300	38	17	14	29	1.89
9940664--9940816	43	3.9	37	78	17	157	26	21	15	35	1.94
9940736--9941029	43	6.3	44	79	18	262	28	21	14	36	1.92
9940776--9941087	52	6.3	51	82	13	343	28	22	14	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199