genome.fa.s18.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  177  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56623605--56623709	41	2.5	41	87	4	140	25	27	19	27	1.98
56623681--56623734	25	2.2	25	93	0	90	24	27	18	29	1.98
56623638--56623775	66	2.1	66	88	0	213	25	27	18	28	1.98
56623703--56623910	41	5.1	41	87	0	281	22	25	20	30	1.98
56623610--56623813	107	1.9	107	85	4	286	25	27	18	28	1.98
56623703--56623943	82	2.9	81	81	6	211	22	26	20	29	1.99
56623703--56623943	123	2.0	122	81	6	290	22	26	20	29	1.99
56624316--56624459	76	1.9	78	82	5	186	41	15	4	38	1.67
56624316--56624481	76	2.2	79	78	8	173	41	15	4	37	1.69
56626847--56626916	16	4.4	16	96	0	104	31	0	35	32	1.58
56626895--56627004	45	2.6	43	80	9	129	33	5	29	31	1.80
56627124--56627165	15	2.7	16	82	14	52	52	2	0	45	1.13
56627133--56627174	15	2.9	15	82	10	52	52	0	0	47	1.00
56627340--56627400	28	2.2	28	85	5	81	50	3	0	45	1.17
56627347--56627487	47	3.1	45	67	19	112	48	3	2	45	1.31
56627306--56627522	91	2.4	89	84	6	290	46	4	3	45	1.39
56627340--56627482	44	3.2	42	70	20	119	48	2	2	46	1.28
56630625--56630709	36	2.3	36	84	6	109	57	11	23	7	1.58
56637306--56637398	12	7.8	12	77	0	60	22	15	13	48	1.80
56637306--56637372	18	3.7	18	77	0	62	20	11	16	50	1.76
56637287--56637372	6	14.3	6	77	0	55	19	11	17	51	1.76
56639157--56639234	36	2.2	35	80	11	86	47	10	1	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56639670--56639714	14	3.3	14	81	3	56	75	0	24	0	0.80
56644671--56644708	19	2.0	19	100	0	76	47	10	10	31	1.72
56645922--56645975	28	2.0	26	86	10	74	48	3	22	25	1.67
56646546--56646671	47	2.7	47	82	4	164	23	15	29	32	1.95
56647829--56647946	59	2.0	59	96	0	218	37	27	15	20	1.92
56652885--56653001	59	2.0	59	96	0	216	37	25	16	20	1.93
56653491--56653515	13	1.9	13	100	0	50	28	32	32	8	1.86
56658638--56658687	16	3.2	16	70	13	50	58	4	10	28	1.49
56659251--56659298	18	2.7	17	78	9	51	43	2	0	54	1.12
56661033--56661251	105	2.1	105	81	3	244	29	27	14	28	1.95
56668526--56668752	105	2.2	105	82	4	262	29	27	13	29	1.94
56670582--56670606	13	1.9	13	100	0	50	16	28	16	40	1.89
56671289--56671334	19	2.4	19	85	3	65	50	15	10	23	1.75
56673186--56673316	48	2.8	47	83	4	165	24	16	27	32	1.96
56682560--56682592	13	2.4	14	90	5	50	21	3	0	75	0.93
56684638--56684688	25	2.1	25	85	7	70	43	5	1	49	1.38
56684638--56684688	24	2.1	24	82	13	61	43	5	1	49	1.38
56692233--56692363	11	13.1	10	73	18	78	54	0	3	41	1.18
56692233--56692312	30	2.7	30	86	5	101	55	0	3	41	1.18
56692233--56692417	40	4.6	40	89	2	264	57	0	4	38	1.19
56692233--56692404	79	2.2	79	92	4	283	56	0	4	39	1.18
56692307--56692339	16	2.0	17	88	5	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56692682--56692715	16	2.1	16	88	0	50	38	0	2	58	1.13
56698018--56698159	71	2.0	71	100	0	284	47	9	14	28	1.75
56703136--56703167	10	3.4	10	83	16	50	53	0	9	37	1.34
56705625--56705664	7	5.7	7	93	0	71	75	0	0	25	0.81
56706871--56706905	19	1.9	18	88	11	54	40	0	0	60	0.97
56711811--56711862	27	1.9	27	84	0	68	25	5	3	65	1.32
56712675--56712705	3	10.3	3	100	0	62	64	0	0	35	0.94
56714430--56714495	33	2.0	33	100	0	132	30	9	9	51	1.64
56721502--56721553	27	1.9	27	84	0	68	25	5	3	65	1.32
56722366--56722396	3	10.3	3	100	0	62	64	0	0	35	0.94
56724120--56724185	33	2.0	33	100	0	132	30	9	9	51	1.64
56731187--56731238	27	1.9	27	84	0	68	25	5	3	65	1.32
56732051--56732081	3	10.3	3	100	0	62	64	0	0	35	0.94
56733805--56733870	33	2.0	33	100	0	132	30	9	9	51	1.64
56738861--56738900	21	1.9	21	100	0	80	20	25	17	37	1.94
56746670--56746699	11	2.8	11	95	5	53	40	0	3	56	1.16
56747850--56747932	2	41.5	2	97	0	157	49	0	50	0	1.00
56749421--56749494	34	2.1	35	85	9	98	37	20	9	32	1.85
56749663--56749790	41	3.1	40	85	6	166	26	25	18	29	1.98
56750391--56750433	19	2.3	18	80	11	50	51	9	2	37	1.47
56750428--56750796	78	4.8	78	85	3	316	43	15	4	36	1.66
56750518--56750795	78	3.6	78	92	0	459	43	14	4	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56757622--56757695	2	37.0	2	100	0	148	50	0	50	0	1.00
56758191--56758240	25	2.0	25	96	0	91	42	0	16	42	1.47
56759759--56759805	2	23.5	2	100	0	94	51	0	48	0	1.00
56760131--56760181	2	25.5	2	100	0	102	50	49	0	0	1.00
56760624--56760692	32	2.1	34	86	5	97	24	24	24	26	2.00
56764331--56764372	21	2.0	21	100	0	84	38	4	19	38	1.73
56764388--56764459	36	2.0	36	89	10	112	40	8	13	37	1.75
56765341--56765369	9	3.0	10	90	10	51	20	20	0	58	1.39
56767996--56768634	59	10.8	59	88	5	893	45	3	5	44	1.44
56768297--56768334	19	2.0	20	89	5	60	52	5	0	42	1.24
56767996--56768634	114	5.4	115	87	5	877	45	3	5	44	1.44
56768377--56768592	55	3.9	53	80	10	182	44	4	6	44	1.49
56768466--56768507	19	2.2	19	86	4	57	45	0	7	47	1.30
56800633--56800674	18	2.4	17	77	14	50	76	2	0	21	0.90
56800633--56800674	13	3.1	14	83	10	52	76	2	0	21	0.90
56802182--56802234	17	3.4	17	65	24	53	66	3	3	26	1.26
56802176--56802234	29	2.0	30	96	3	111	61	3	6	28	1.38
56813458--56813487	15	2.1	14	93	6	51	50	0	0	50	1.00
56814869--56814943	29	2.6	27	76	12	69	17	0	29	53	1.44
56819099--56819142	22	2.0	22	100	0	88	31	9	13	45	1.75
56819788--56819840	19	3.0	17	78	10	61	35	9	18	35	1.84
56819812--56819856	23	2.0	23	91	4	74	37	4	17	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56819822--56819866	23	2.0	23	86	4	65	33	4	15	46	1.66
56820296--56820335	3	13.3	3	84	10	55	32	0	0	67	0.91
56820280--56820334	15	3.7	15	74	16	53	30	0	1	67	1.01
56820282--56820333	12	4.1	12	80	14	52	28	0	1	69	0.99
56838796--56838831	3	12.0	3	100	0	72	33	0	33	33	1.58
56839206--56839258	26	2.0	28	81	7	65	20	22	11	45	1.83
56843806--56843859	19	2.9	18	73	10	56	53	1	0	44	1.11
56854810--56854852	19	2.3	19	84	8	52	23	30	0	46	1.52
56861602--56861658	20	2.8	20	75	0	60	54	12	5	28	1.59
56867290--56867329	19	2.1	19	86	9	55	40	20	0	40	1.52
56873514--56873563	25	2.0	25	96	0	91	30	26	4	40	1.74
56879825--56879879	22	2.5	22	96	0	101	29	16	21	32	1.95
56880177--56880272	38	2.6	38	86	1	131	27	13	18	40	1.88
56881229--56881279	25	2.0	25	85	7	68	47	3	1	47	1.32
56885850--56885902	26	2.0	27	88	7	81	16	22	13	47	1.82
56890293--56890342	16	3.1	16	85	2	55	18	4	6	72	1.22
56890309--56890348	16	2.6	15	84	7	53	22	2	7	67	1.28
56890702--56890749	22	2.2	22	100	0	96	35	33	8	22	1.84
56897828--56898428	76	7.9	76	84	1	670	35	19	16	28	1.94
56897828--56898428	227	2.7	227	84	2	735	35	19	16	28	1.94
56899305--56899349	15	3.1	15	87	3	65	6	11	13	68	1.37
56899310--56899351	14	2.9	14	89	3	66	7	11	9	71	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56904484--56904513	15	2.1	15	93	6	53	50	0	0	50	1.00
56907338--56907377	15	2.7	15	88	3	55	27	0	2	70	1.01
56910632--56910725	40	2.3	40	87	3	136	24	15	22	37	1.93
56911874--56911910	19	2.0	18	89	5	56	62	2	2	32	1.23
56912261--56912294	9	3.8	9	92	0	50	58	2	5	32	1.37
56912997--56913033	20	1.9	18	89	10	56	67	8	18	5	1.36
56913616--56913669	7	7.6	7	77	4	54	22	0	29	48	1.51
56913616--56913658	22	2.0	22	90	0	68	20	0	32	46	1.51
56913730--56913762	16	2.1	16	88	11	50	42	0	0	57	0.98
56914640--56914687	21	2.2	23	88	7	73	31	2	0	66	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199