genome.fa.s18.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  132  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44191928--44192037	20	5.5	20	69	8	73	21	24	20	32	1.98
44193686--44193755	21	3.3	21	76	11	70	65	12	21	0	1.25
44193687--44193763	39	2.0	39	82	5	93	63	11	24	0	1.28
44193680--44193742	22	2.9	22	75	13	67	66	9	23	0	1.21
44193679--44193781	43	2.3	44	85	12	140	65	8	26	0	1.22
44194277--44194334	30	1.9	30	85	0	80	41	5	24	29	1.76
44194546--44194577	13	2.5	13	94	0	55	31	0	12	56	1.37
44194672--44194912	50	4.7	50	86	5	297	26	24	29	19	1.99
44194672--44194920	100	2.4	103	87	7	355	26	23	29	20	1.99
44197357--44197384	13	2.2	13	100	0	56	21	7	25	46	1.76
44199367--44199471	45	2.3	44	85	8	140	64	8	26	0	1.22
44199967--44200024	30	1.9	30	89	0	89	41	3	24	31	1.71
44200235--44200266	13	2.5	13	94	0	55	31	0	12	56	1.37
44200361--44200601	50	4.7	50	84	5	288	26	24	29	19	1.99
44200365--44200609	100	2.4	103	87	7	347	25	24	28	21	1.99
44203920--44203972	24	2.2	24	82	3	61	50	3	7	37	1.49
44210856--44210916	27	2.2	28	91	2	97	11	21	39	27	1.88
44213384--44213522	40	3.5	40	82	2	145	37	19	25	17	1.93
44213405--44213508	20	5.2	20	67	15	63	36	19	26	17	1.94
44214484--44214530	18	2.6	18	83	6	60	40	17	0	42	1.49
44215041--44215085	23	1.9	24	86	4	65	28	48	0	22	1.50
44220107--44220177	37	2.0	36	83	5	90	64	0	2	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44226931--44227030	52	1.9	51	89	2	155	40	5	7	48	1.52
44235299--44235483	79	2.3	82	83	7	229	25	27	22	24	2.00
44235280--44235483	40	5.1	40	81	8	229	25	26	22	25	2.00
44243285--44243468	39	4.7	40	82	8	216	26	27	22	24	2.00
44247545--44247605	29	2.1	28	84	3	77	42	14	14	27	1.85
44249159--44249202	22	2.0	21	82	4	52	34	4	4	56	1.40
44254788--44255124	29	11.9	28	75	6	250	31	19	21	27	1.97
44254788--44255144	57	6.3	57	77	6	278	31	19	22	26	1.97
44254792--44255123	86	3.9	85	81	3	355	31	19	21	27	1.98
44254788--44255169	29	13.5	27	74	12	236	31	19	21	26	1.97
44257179--44257240	26	2.4	26	76	10	65	37	20	6	35	1.79
44257264--44257394	68	1.9	71	85	6	187	51	3	3	41	1.35
44257784--44257813	9	3.3	9	90	0	51	40	0	3	56	1.16
44266224--44266264	21	2.0	21	90	0	64	39	21	7	31	1.81
44270829--44270873	23	2.0	23	90	0	72	46	4	2	46	1.35
44271034--44271058	3	8.3	3	100	0	50	32	0	0	68	0.90
44271547--44271593	11	4.5	11	82	17	64	61	12	0	25	1.31
44271548--44271584	19	1.9	19	100	0	74	62	10	0	27	1.28
44277635--44277745	55	2.0	55	82	0	132	24	22	27	26	2.00
44278788--44278874	39	2.2	39	85	4	113	37	22	28	10	1.87
44278795--44278878	20	4.2	20	80	3	98	39	25	28	7	1.82
44281091--44281125	16	2.1	17	89	5	54	45	0	11	42	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44281113--44281151	19	2.0	19	85	5	51	41	0	7	51	1.31
44293595--44293646	26	2.0	26	92	0	86	42	17	5	34	1.73
44305629--44305785	84	1.9	84	89	0	242	29	20	18	31	1.96
44306060--44306161	50	2.0	50	92	0	168	35	2	27	34	1.72
44308315--44308357	21	2.1	20	83	12	52	39	9	2	48	1.48
44310957--44310992	14	2.5	15	91	8	58	77	0	22	0	0.76
44314128--44314195	19	3.4	19	74	11	57	67	1	22	8	1.26
44333525--44333557	12	2.5	13	90	9	50	24	6	3	66	1.28
44333936--44334000	30	2.2	30	94	0	112	56	15	4	23	1.57
44334891--44334941	18	2.7	18	73	14	50	43	0	3	52	1.19
44334982--44335017	3	12.0	3	93	0	63	66	2	0	30	1.06
44342768--44342805	18	2.1	18	90	0	58	13	18	0	68	1.21
44348897--44348955	30	2.0	30	86	6	84	49	10	6	33	1.63
44356295--44356354	21	2.8	22	82	7	70	43	28	15	13	1.84
44364372--44364402	6	5.2	6	100	0	62	0	32	0	67	0.91
44364837--44364870	16	2.1	17	88	5	52	44	20	0	35	1.52
44373117--44373152	3	12.0	3	100	0	72	33	0	0	66	0.92
44378591--44378665	27	2.7	28	89	4	116	32	25	18	24	1.97
44378888--44379089	27	7.5	26	81	6	215	24	21	17	36	1.95
44381711--44382325	114	5.4	113	78	6	544	25	21	24	29	1.99
44381696--44382243	227	2.4	229	82	4	635	26	21	23	27	1.99
44381697--44382326	227	2.8	226	79	6	632	26	21	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44382699--44382748	14	3.5	15	78	13	52	32	0	32	36	1.58
44382767--44382923	81	1.9	81	87	5	228	27	0	28	44	1.55
44382827--44382867	20	2.0	20	85	0	55	14	0	46	39	1.45
44382902--44382941	14	2.9	14	80	0	53	15	0	45	40	1.46
44383298--44383353	20	2.8	20	81	5	60	8	0	44	46	1.34
44385417--44385448	15	2.1	15	94	0	55	31	6	9	53	1.58
44386413--44386630	13	16.5	13	72	8	145	39	10	4	45	1.58
44386437--44386639	53	3.8	53	95	0	361	40	10	3	44	1.58
44386897--44387041	28	5.0	28	74	15	114	45	16	1	36	1.56
44386772--44387172	157	2.5	157	94	1	705	45	14	1	38	1.54
44386992--44387041	16	3.4	16	71	21	54	46	20	2	32	1.62
44386925--44387226	129	2.4	128	82	8	330	46	15	0	37	1.53
44386990--44387226	67	3.6	67	74	16	242	46	15	0	37	1.52
44387053--44387172	28	4.1	28	70	19	100	45	15	0	38	1.51
44387020--44387294	129	2.1	129	84	7	355	46	16	1	36	1.56
44387278--44387533	9	29.8	9	72	16	195	46	20	1	31	1.60
44387278--44387363	25	3.4	25	91	0	136	50	19	2	27	1.60
44387297--44387390	16	6.1	16	71	22	58	48	20	1	29	1.56
44387249--44387533	34	8.2	34	71	16	176	46	20	1	31	1.61
44387255--44387544	25	11.9	23	74	16	123	47	19	1	31	1.60
44387319--44387547	123	1.9	120	81	12	277	47	19	0	32	1.56
44393555--44393848	42	7.0	41	85	8	385	25	19	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44393555--44393848	85	3.5	83	84	7	396	25	19	20	34	1.96
44393558--44393848	127	2.3	127	87	6	412	25	19	19	34	1.96
44396097--44396151	26	2.1	26	100	0	110	54	18	3	23	1.59
44404796--44404833	19	2.0	19	85	10	51	21	42	0	36	1.53
44405751--44405833	34	2.4	34	82	6	96	30	18	22	28	1.97
44406283--44406551	27	10.0	27	83	3	283	19	17	22	40	1.91
44406801--44406838	20	1.9	20	88	0	58	21	31	21	26	1.98
44410832--44411013	45	4.1	45	84	1	224	34	26	15	23	1.94
44412887--44412942	26	2.2	26	96	0	103	42	26	16	14	1.86
44413100--44413432	27	12.4	26	84	9	381	24	20	18	36	1.94
44413100--44413432	54	6.2	53	85	6	431	24	20	18	36	1.94
44413100--44413433	161	2.1	161	88	3	494	24	20	18	37	1.94
44421377--44421414	19	2.0	19	85	10	51	21	42	0	36	1.53
44428122--44428268	43	3.5	43	79	7	165	27	25	17	29	1.97
44432602--44432687	27	3.2	27	83	0	82	31	9	20	38	1.85
44432625--44432699	27	2.8	28	83	6	100	26	9	25	38	1.86
44432847--44432911	27	2.4	27	73	0	67	33	12	30	23	1.91
44438300--44438342	19	2.2	20	84	12	63	32	18	0	48	1.48
44439510--44439553	16	2.8	17	80	13	58	4	15	9	70	1.30
44440043--44440072	9	3.4	9	95	4	53	66	10	0	23	1.21
44442299--44442398	35	2.9	35	84	0	128	25	29	17	29	1.97
44445437--44445506	33	2.1	33	89	5	106	35	0	2	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44447266--44447298	17	1.9	17	100	0	66	27	6	24	42	1.78
44449617--44449641	10	2.5	10	100	0	50	0	8	0	92	0.40
44451596--44451778	51	3.6	51	74	5	156	25	17	25	31	1.97
44451789--44451876	45	2.0	45	90	0	140	27	15	21	35	1.94
44459894--44460007	42	2.7	43	77	10	128	41	18	14	25	1.89
44466799--44466912	42	2.7	43	78	8	126	27	12	19	41	1.87
44473369--44473553	79	2.3	81	83	7	227	25	27	22	24	2.00
44473369--44473553	40	4.7	40	82	7	225	25	27	22	24	2.00
44482595--44482630	10	3.6	10	88	0	54	58	2	0	38	1.13
44488636--44488817	50	3.7	50	80	3	145	21	26	22	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199