genome.fa.s18.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  138  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46020061--46020211	53	2.8	53	77	10	146	16	19	20	43	1.89
46020061--46020307	54	4.4	54	73	15	176	17	20	19	42	1.89
46020127--46020299	92	1.9	92	86	3	251	17	22	20	39	1.92
46020147--46020275	65	2.0	64	90	1	204	16	22	21	39	1.92
46020211--46020313	54	1.9	54	93	0	179	18	22	18	40	1.91
46023616--46023667	26	2.0	26	100	0	104	26	11	26	34	1.91
46023866--46023915	24	2.0	24	88	3	73	46	10	22	22	1.81
46027045--46027224	57	3.1	57	84	10	240	30	16	6	47	1.72
46029032--46029093	28	2.3	27	83	5	88	19	24	16	40	1.91
46029039--46029092	28	2.0	27	92	3	90	20	27	14	37	1.92
46029058--46029187	33	3.9	33	72	4	118	16	23	15	44	1.86
46036368--46036396	15	2.0	15	93	6	51	34	31	13	20	1.92
46036577--46036664	44	2.0	44	97	0	167	30	18	14	36	1.91
46042042--46042218	82	2.1	83	85	3	241	33	19	7	39	1.80
46042115--46042332	117	1.8	121	84	8	302	33	21	7	38	1.82
46042288--46042483	83	2.3	83	85	2	259	33	18	8	38	1.82
46043986--46044023	16	2.4	16	95	0	67	13	18	23	44	1.85
46047726--46047830	23	4.6	23	84	2	131	44	22	17	15	1.86
46049390--46049656	103	2.6	104	89	4	423	19	20	30	30	1.97
46056466--46056517	27	1.9	27	96	0	95	13	25	32	28	1.93
46056565--46056612	24	2.0	25	91	4	80	14	20	35	29	1.93
46078621--46078659	11	3.5	11	89	0	60	23	46	7	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46085926--46085997	30	2.5	28	82	6	83	26	26	27	19	1.99
46086120--46086206	26	3.3	26	81	9	106	35	18	24	21	1.95
46086120--46086219	26	3.8	26	78	0	101	37	19	23	21	1.95
46086419--46086675	27	9.5	27	80	4	148	21	15	19	44	1.87
46086401--46086675	54	5.1	54	78	3	203	21	16	18	43	1.88
46086401--46086674	81	3.4	82	79	3	286	21	16	18	43	1.88
46093612--46093667	27	2.1	27	83	6	69	32	21	25	21	1.98
46093780--46093850	26	2.7	26	91	0	115	39	21	23	15	1.91
46094032--46094303	27	10.2	27	81	3	282	21	18	18	41	1.90
46094032--46094238	78	2.6	79	84	3	256	22	18	18	41	1.91
46094068--46094266	105	1.9	105	85	2	274	21	17	20	40	1.91
46097210--46097254	22	2.0	23	86	4	65	73	0	11	15	1.10
46101101--46101134	13	2.6	13	95	0	59	41	2	0	55	1.15
46101441--46101536	47	2.0	47	100	0	192	45	21	14	17	1.84
46106657--46106830	38	4.4	38	68	18	115	45	1	4	49	1.28
46106680--46106729	17	3.0	17	73	23	52	44	0	0	56	0.99
46106752--46106937	61	3.1	61	67	17	179	42	2	6	48	1.43
46106663--46106989	120	2.7	120	95	0	575	44	1	4	49	1.32
46106817--46106858	15	2.9	15	82	10	52	47	0	0	52	1.00
46106946--46106987	15	2.7	16	82	14	52	45	0	2	52	1.13
46106937--46106978	15	2.9	14	86	10	50	45	0	0	54	0.99
46107201--46107249	16	3.1	16	93	0	89	22	36	4	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46107276--46107312	18	2.1	18	100	0	74	37	27	10	24	1.88
46108848--46108892	22	2.0	22	86	0	63	11	22	0	66	1.22
46109157--46109405	99	2.5	99	94	1	419	29	14	21	35	1.92
46119748--46119783	10	3.6	10	85	14	56	36	0	0	63	0.94
46124442--46124494	3	17.7	3	96	0	97	64	0	1	33	1.05
46125202--46125230	6	5.0	6	91	8	51	86	0	0	13	0.58
46125735--46125826	46	2.0	46	95	0	166	40	14	11	33	1.82
46126300--46126332	11	2.8	12	86	13	50	6	0	21	72	1.05
46127189--46127225	18	2.1	18	100	0	74	37	10	24	27	1.88
46131039--46131080	16	2.6	16	88	0	57	45	0	0	54	0.99
46131086--46131174	21	4.6	20	70	20	57	48	0	2	49	1.13
46131683--46131725	17	2.5	17	96	0	77	67	11	0	20	1.22
46133342--46133421	29	2.8	28	77	11	90	31	11	1	56	1.42
46145821--46146198	85	4.4	85	68	14	220	34	18	17	29	1.94
46145778--46146280	129	3.9	129	95	0	889	33	18	18	29	1.95
46145777--46146276	44	11.6	44	69	11	282	33	18	18	29	1.95
46147016--46147040	11	2.3	11	100	0	50	8	8	0	84	0.79
46148227--46148306	29	2.8	28	77	11	90	31	11	1	56	1.42
46151430--46151471	23	1.9	22	85	9	59	23	4	4	66	1.30
46157311--46157496	79	2.3	80	83	8	218	25	26	22	24	2.00
46157311--46157496	40	4.6	39	84	6	205	25	26	22	24	2.00
46163030--46163071	23	1.9	22	85	9	59	21	4	7	66	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46168209--46168262	22	2.3	24	81	9	67	35	5	7	51	1.53
46168964--46168998	3	11.7	3	93	0	61	31	2	0	65	1.07
46171144--46171209	13	5.6	12	69	20	50	48	13	0	37	1.43
46171144--46171212	23	3.0	23	95	0	120	47	13	0	39	1.42
46178396--46178590	103	1.9	104	87	3	286	27	19	22	31	1.98
46178502--46178680	66	2.8	66	84	6	233	25	20	22	31	1.98
46179601--46179742	71	2.0	72	90	1	223	21	15	22	40	1.91
46182271--46182346	11	6.8	11	70	24	52	43	1	1	53	1.17
46182329--46182378	20	2.7	19	80	20	61	46	2	0	52	1.12
46182357--46182473	62	1.9	61	84	5	157	43	2	4	49	1.35
46186293--46186345	10	5.1	10	86	8	61	32	0	5	62	1.19
46186293--46186345	22	2.5	20	84	6	61	32	0	5	62	1.19
46186878--46186928	25	2.0	25	81	7	59	9	35	0	54	1.33
46193598--46193635	18	2.1	18	100	0	76	34	15	15	34	1.90
46196933--46196962	8	3.6	8	91	8	51	33	0	0	66	0.92
46196926--46196972	17	2.6	18	86	10	69	34	0	0	65	0.93
46207405--46207435	16	1.9	16	93	0	53	51	9	3	35	1.51
46213573--46213606	17	2.1	17	88	5	52	50	0	20	29	1.49
46213973--46214024	10	5.2	9	76	19	50	44	0	1	53	1.11
46213956--46214024	31	2.3	30	89	2	102	40	0	2	56	1.14
46213979--46214028	16	3.2	16	70	13	50	42	0	4	54	1.19
46215622--46215670	24	2.0	24	84	7	64	30	42	14	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46218926--46218980	27	2.0	27	96	0	101	30	14	12	41	1.83
46223159--46223211	26	2.0	26	100	0	106	49	3	18	28	1.65
46224046--46224158	45	2.5	45	88	0	181	45	9	21	23	1.81
46225817--46225871	27	2.0	27	100	0	110	45	10	18	25	1.82
46228274--46228312	20	2.0	20	85	10	53	51	0	0	48	1.00
46238834--46238897	26	2.5	26	100	0	128	26	15	26	31	1.96
46245303--46245524	27	8.2	27	76	5	180	36	20	21	22	1.95
46245545--46245631	24	3.6	24	85	0	84	26	8	19	45	1.78
46245746--46245799	26	2.1	26	89	6	83	22	18	22	37	1.95
46245800--46245939	32	4.4	32	84	2	158	18	21	22	37	1.94
46245931--46245995	22	3.0	21	69	13	51	20	18	16	44	1.87
46252766--46252841	23	3.2	22	65	22	55	43	6	1	48	1.37
46256387--46256505	35	3.4	36	83	5	118	46	31	10	11	1.74
46256417--46256505	35	2.5	35	92	0	151	44	33	10	11	1.74
46258456--46258567	41	2.7	42	86	9	158	28	20	21	29	1.98
46258784--46258932	37	4.1	37	89	4	216	32	8	24	34	1.85
46258784--46258945	70	2.3	68	85	8	193	31	9	25	33	1.87
46260456--46260497	21	2.0	21	90	9	68	23	9	4	61	1.45
46262126--46262150	11	2.3	11	100	0	50	48	0	8	44	1.32
46263511--46263651	49	2.9	49	86	5	187	41	6	2	50	1.40
46265931--46265965	16	2.1	17	89	5	54	45	11	0	42	1.40
46273973--46274019	23	2.0	24	83	8	60	40	2	4	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46274177--46274222	21	2.1	22	84	8	58	52	2	4	41	1.33
46276176--46276205	13	2.4	13	94	5	53	30	0	6	63	1.20
46276782--46276817	10	3.7	10	96	3	65	52	8	0	38	1.32
46280457--46280495	17	2.4	17	86	4	53	74	2	0	23	0.94
46282592--46282711	43	2.7	44	78	11	122	27	18	15	38	1.91
46287542--46287576	16	2.2	16	89	0	52	45	0	0	54	0.99
46287545--46287575	10	2.9	11	90	9	55	45	0	0	54	0.99
46287637--46287670	13	2.5	14	95	4	61	61	0	0	38	0.96
46290047--46290133	29	3.0	29	91	1	129	28	17	25	28	1.97
46314437--46314497	30	2.0	32	87	6	90	37	3	8	50	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199