genome.fa.s18.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  106  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35497066--35497094	15	1.9	15	100	0	58	20	0	34	44	1.52
35497134--35497180	22	2.1	23	84	11	71	21	0	51	27	1.48
35497136--35497180	7	6.3	7	84	5	54	20	0	51	28	1.48
35497108--35497173	14	4.6	14	84	3	69	19	1	45	33	1.60
35497101--35497168	14	4.9	14	80	7	66	19	1	42	36	1.60
35497060--35497205	7	20.6	7	71	8	53	21	0	35	42	1.58
35501266--35501506	43	5.6	43	81	3	254	22	16	26	34	1.95
35501266--35501503	87	2.8	85	80	4	253	23	16	26	34	1.95
35503021--35503340	50	6.4	50	88	1	239	21	28	21	28	1.99
35503057--35503348	50	5.8	50	89	0	422	21	29	21	27	1.99
35508695--35509053	104	3.5	104	95	0	621	30	29	20	19	1.97
35510177--35510208	12	2.7	12	95	0	55	12	25	37	25	1.91
35514693--35514725	17	1.9	17	93	0	57	18	9	12	60	1.57
35520372--35520441	3	23.0	3	77	2	59	54	1	5	38	1.33
35520402--35520458	22	2.6	22	83	2	62	52	0	5	42	1.24
35522047--35522141	44	2.2	44	84	7	122	26	23	21	29	1.99
35522122--35523128	50	20.2	50	71	6	653	23	21	23	31	1.98
35522137--35523140	100	10.1	100	88	2	1408	23	21	23	31	1.98
35523168--35523378	44	4.7	45	69	11	157	22	24	25	27	2.00
35523147--35523378	89	2.6	88	87	2	313	21	25	25	28	1.99
35525485--35525546	31	2.1	29	82	11	74	38	8	14	38	1.76
35525494--35525559	31	2.1	31	88	0	96	42	7	13	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35529719--35529773	3	18.0	3	79	3	56	56	1	3	38	1.28
35536272--35536300	6	5.0	6	95	4	51	82	0	0	17	0.66
35536272--35536306	11	3.1	11	88	8	52	80	2	0	17	0.84
35550671--35550761	36	2.5	36	89	0	128	23	10	36	29	1.89
35550710--35550794	36	2.4	36	83	0	98	23	14	36	25	1.93
35552081--35552191	34	3.3	33	80	2	114	22	18	27	30	1.98
35552099--35552191	17	5.5	17	70	10	73	22	19	27	30	1.98
35559766--35559861	21	4.5	21	66	29	60	62	4	3	30	1.29
35561414--35561695	50	5.7	49	69	5	199	24	22	23	29	1.99
35561375--35561745	50	7.4	50	69	6	196	23	24	22	29	1.99
35561239--35561757	100	5.2	100	83	4	575	24	23	21	30	1.99
35563161--35563189	15	2.0	15	93	6	51	13	20	0	65	1.26
35563700--35563754	13	4.5	11	79	18	56	1	10	5	81	0.92
35566781--35566807	14	1.9	14	100	0	54	33	37	14	14	1.88
35566779--35566831	28	2.0	27	89	10	83	30	35	16	16	1.92
35568190--35568215	6	4.3	6	100	0	52	84	0	0	15	0.62
35569398--35569430	17	1.9	17	88	11	50	75	12	9	3	1.14
35589367--35589432	19	3.4	18	75	19	62	42	0	1	56	1.08
35589367--35589460	20	4.8	19	72	16	68	42	1	3	53	1.24
35594072--35594307	5	47.2	5	71	1	60	9	20	14	55	1.67
35594072--35594237	45	3.6	45	71	7	116	9	21	14	54	1.69
35594093--35594196	55	1.9	55	87	0	154	10	22	11	55	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35594180--35594232	25	2.1	25	89	0	79	9	18	16	54	1.69
35594191--35594269	40	2.0	40	84	0	104	10	21	13	54	1.69
35594251--35594306	25	2.2	25	83	0	67	8	17	16	57	1.64
35597549--35597629	25	3.2	25	69	10	67	11	14	17	56	1.66
35597591--35597622	10	3.2	10	95	0	55	9	3	21	65	1.35
35597611--35597656	15	3.1	15	80	0	56	6	13	17	63	1.50
35597599--35597652	25	2.2	25	86	6	74	7	9	18	64	1.45
35607408--35607474	30	2.2	29	82	10	73	47	2	1	47	1.26
35607634--35607708	13	6.1	13	75	17	79	41	25	4	29	1.73
35607664--35607707	22	2.0	22	100	0	88	45	22	4	27	1.72
35615209--35615253	19	2.3	20	88	7	74	33	11	6	48	1.65
35615330--35615372	18	2.4	18	88	0	59	48	4	0	46	1.22
35617144--35617200	21	2.7	21	94	0	105	42	10	10	36	1.74
35617695--35617757	29	2.0	30	82	14	74	19	6	3	71	1.21
35622687--35622770	32	2.6	33	85	9	120	28	1	19	51	1.54
35623852--35623947	46	2.1	46	90	0	147	28	8	21	41	1.82
35624300--35624535	125	1.9	124	92	2	393	29	14	22	33	1.94
35627749--35627965	61	3.6	61	87	3	291	37	2	23	35	1.68
35627749--35628035	29	9.8	29	75	7	238	35	2	24	38	1.67
35627749--35629026	46	25.4	57	79	13	361	29	0	23	46	1.57
35627993--35629022	23	42.9	23	83	10	1197	28	0	22	49	1.53
35627964--35629022	46	21.9	46	85	10	1318	28	0	22	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35627975--35629022	97	10.9	97	85	10	1212	27	0	22	49	1.53
35627936--35629022	195	5.6	188	85	9	1424	28	0	22	48	1.54
35631166--35631199	15	2.3	15	90	5	52	67	5	0	26	1.13
35631297--35631360	28	2.3	28	84	10	87	59	1	1	37	1.16
35631298--35631352	28	1.9	29	92	3	94	61	1	0	36	1.06
35631395--35631436	22	1.9	22	90	0	66	33	0	33	33	1.58
35631438--35631529	22	4.2	22	86	8	125	42	0	27	30	1.56
35631438--35631529	44	2.1	44	89	4	141	42	0	27	30	1.56
35632984--35633039	28	2.1	28	86	6	80	37	5	5	51	1.47
35642770--35642809	19	2.0	20	85	4	55	45	7	12	35	1.70
35645616--35645668	18	2.9	18	80	2	61	41	45	1	11	1.51
35645729--35645755	8	3.4	8	100	0	54	55	11	11	22	1.66
35645778--35645835	9	6.4	9	89	0	89	25	8	20	44	1.80
35658204--35658252	20	2.7	18	77	22	57	51	4	2	42	1.32
35660386--35660503	51	2.3	51	86	4	159	45	5	19	28	1.73
35669936--35670009	33	2.2	33	85	0	103	31	9	14	44	1.77
35673540--35673692	56	2.7	56	88	2	227	32	6	14	46	1.70
35676114--35676176	31	2.0	31	96	0	117	46	9	7	36	1.66
35678307--35678331	11	2.3	11	100	0	50	12	8	8	72	1.29
35690021--35690060	18	2.2	18	91	8	64	72	2	0	25	0.97
35692071--35692112	22	1.9	22	90	0	66	16	11	42	28	1.84
35693415--35693464	26	2.0	24	84	7	64	22	0	6	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35695763--35695803	20	2.0	20	95	0	73	29	12	24	34	1.91
35698120--35698532	94	4.4	95	82	4	369	30	18	17	33	1.94
35698222--35698480	44	5.6	43	66	20	112	28	16	18	35	1.93
35698458--35698661	50	4.2	50	75	14	196	27	22	19	30	1.98
35698508--35698719	93	2.3	93	85	4	275	27	19	20	32	1.97
35698554--35698900	44	7.6	44	74	14	204	26	20	19	33	1.96
35698410--35698946	138	3.9	138	77	6	501	27	20	19	32	1.97
35698504--35698946	94	4.8	93	70	15	265	26	20	19	32	1.97
35700341--35700372	16	2.0	16	93	0	55	6	28	25	40	1.79
35713300--35713470	90	1.9	90	81	2	209	26	21	14	38	1.91
35716857--35716897	13	3.2	13	86	3	57	7	19	2	70	1.22
35718481--35718513	15	2.1	16	94	5	59	36	0	0	63	0.95
35719327--35719367	21	2.0	21	85	9	57	43	9	4	41	1.59
35719841--35719865	7	3.6	7	100	0	50	64	0	0	36	0.94
35725367--35725477	29	3.8	29	75	1	78	22	17	21	38	1.93
35729074--35729216	41	3.5	40	87	3	135	27	23	20	27	1.99
35732451--35732484	14	2.5	13	90	9	50	2	17	0	79	0.86
35746751--35746781	15	2.1	15	93	0	53	16	6	9	67	1.39
35748334--35748409	11	6.8	11	72	21	52	40	2	2	53	1.28
35748400--35748437	20	1.9	20	100	0	76	42	2	10	44	1.52
35750344--35750378	19	1.9	17	88	11	52	25	11	0	62	1.28
35752769--35752806	3	12.7	3	100	0	76	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35772763--35772845	43	2.0	43	95	2	150	27	7	7	57	1.52
35784232--35784289	27	2.1	27	96	0	107	20	27	20	31	1.98
35795883--35795933	21	2.4	22	83	6	61	7	21	1	68	1.25
35810707--35810752	3	15.3	3	100	0	92	34	0	0	65	0.93
35819310--35819346	19	1.9	19	88	0	56	48	8	0	43	1.32
35826973--35827021	24	2.0	24	88	4	71	32	16	18	32	1.93
35827581--35827610	16	1.9	16	93	6	53	30	0	20	50	1.49
35831546--35831688	37	3.8	37	78	4	126	30	16	18	35	1.92
35832017--35832071	22	2.4	23	84	3	67	43	12	5	38	1.66
35833779--35834075	108	2.7	109	84	5	382	56	15	1	26	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199