genome.fa.s18.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  90  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31178183--31178249	22	3.0	22	87	10	93	40	7	7	44	1.61
31178367--31178422	18	3.1	19	76	7	62	41	14	10	33	1.80
31178417--31178467	18	2.9	17	77	8	57	47	7	9	35	1.66
31178974--31179023	7	6.9	7	93	6	82	0	16	0	84	0.63
31178965--31179040	14	5.1	15	84	9	93	0	18	0	81	0.69
31178974--31179035	22	3.0	22	86	9	69	0	17	0	82	0.67
31178964--31179040	23	3.3	22	76	16	84	0	18	0	81	0.68
31179170--31179194	12	2.1	12	100	0	50	0	8	8	84	0.79
31179172--31179236	18	3.5	19	70	8	62	1	7	12	78	1.02
31179328--31179373	3	15.0	3	82	13	58	0	36	0	63	0.95
31179342--31179370	10	2.9	10	100	0	58	0	37	0	62	0.96
31179328--31179373	13	3.7	13	81	18	62	0	36	0	63	0.95
31179429--31179478	10	5.2	10	80	7	59	0	30	0	70	0.88
31179433--31179475	19	2.3	19	88	11	63	0	30	0	69	0.88
31179722--31179838	30	3.9	29	77	11	94	44	3	21	30	1.69
31179737--31179838	30	3.4	30	83	2	125	44	3	21	30	1.70
31179834--31179868	14	2.4	15	90	4	54	28	0	0	71	0.86
31186367--31186434	35	1.9	35	82	5	84	61	0	1	36	1.05
31202403--31202448	22	2.1	22	87	0	65	36	0	26	36	1.57
31207356--31207386	16	1.9	16	93	0	53	32	3	12	51	1.56
31217310--31217417	50	2.2	50	96	0	198	37	2	5	53	1.39
31240188--31240213	13	2.0	13	100	0	52	53	0	23	23	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31240342--31240366	8	3.1	8	100	0	50	12	24	0	64	1.27
31240544--31240739	51	3.9	50	79	4	214	30	27	17	24	1.97
31248719--31248804	41	2.1	41	86	4	120	27	23	18	30	1.98
31254655--31254783	43	3.0	43	81	8	163	31	27	18	21	1.97
31256233--31256285	28	2.0	26	85	7	70	13	9	1	75	1.12
31259042--31259157	41	2.8	40	78	6	126	32	27	18	20	1.97
31259203--31259355	64	2.3	67	85	6	197	41	15	8	34	1.78
31259384--31259508	60	2.1	60	82	5	146	42	15	4	38	1.65
31264919--31264960	21	2.0	22	85	4	59	54	2	7	35	1.41
31273334--31273385	6	8.7	6	100	0	104	67	17	0	15	1.24
31277027--31277079	21	2.5	20	79	8	61	32	33	5	28	1.81
31278185--31278230	22	2.2	21	84	7	58	58	0	2	39	1.10
31284626--31284831	103	2.0	103	93	0	349	32	8	14	45	1.75
31285822--31285864	3	14.3	3	85	0	59	60	0	39	0	0.97
31287281--31287305	2	12.5	2	100	0	50	48	0	0	52	1.00
31288465--31288494	14	2.1	14	93	0	51	30	6	20	43	1.77
31288651--31288702	19	2.7	19	85	5	70	57	7	0	34	1.27
31288658--31288721	20	3.2	20	79	16	71	54	9	0	35	1.33
31288667--31288722	27	2.1	27	83	12	71	51	10	0	37	1.37
31288732--31288784	20	2.7	19	78	21	56	69	3	5	20	1.25
31292431--31292470	19	2.1	19	100	0	80	27	27	20	25	1.99
31294248--31294288	7	5.9	7	88	11	66	70	0	17	12	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31294249--31294294	14	3.3	14	79	11	58	73	0	13	13	1.09
31294249--31294296	20	2.3	21	86	10	64	70	0	14	14	1.16
31294248--31294287	21	2.0	21	95	5	73	70	0	17	12	1.18
31295518--31296197	44	15.5	45	65	13	245	30	18	23	27	1.97
31295518--31296197	132	5.2	132	90	0	1042	30	18	23	27	1.97
31296176--31296452	44	6.3	44	88	2	405	28	12	24	33	1.92
31297077--31297122	22	2.1	22	91	0	74	8	52	21	17	1.71
31297080--31297133	22	2.5	22	84	0	63	9	50	24	16	1.74
31298388--31298443	23	2.5	23	85	5	80	28	14	3	53	1.57
31308555--31308765	117	1.8	117	91	2	352	22	9	24	43	1.83
31309364--31309432	33	2.1	33	89	5	104	21	2	53	21	1.59
31309607--31309760	51	3.0	51	90	0	245	28	9	26	35	1.87
31313543--31313616	32	2.3	32	77	13	80	29	12	17	40	1.86
31313639--31313682	16	2.7	16	89	3	61	31	2	25	40	1.68
31317976--31318006	4	7.8	4	100	0	62	25	0	0	74	0.82
31318334--31318474	73	1.9	73	91	0	228	30	17	17	35	1.92
31327136--31327192	29	2.0	29	93	3	98	31	0	0	68	0.90
31327139--31327206	29	2.4	27	84	15	93	27	1	0	70	0.96
31330118--31330155	19	2.1	19	95	5	69	50	10	0	39	1.37
31331326--31331364	17	2.3	17	90	0	60	41	7	17	33	1.79
31331975--31332001	2	13.5	2	100	0	54	48	0	0	51	1.00
31334210--31334413	42	4.8	42	80	7	191	33	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31334216--31334413	43	4.7	42	81	9	190	33	19	20	26	1.96
31334216--31334413	85	2.3	84	82	8	215	33	19	20	26	1.96
31340308--31340758	9	49.8	9	77	9	436	36	0	18	44	1.56
31340599--31340662	28	2.3	28	94	0	110	35	3	14	46	1.60
31340642--31340756	34	3.3	34	83	4	113	34	0	17	47	1.48
31340767--31340809	19	2.2	19	91	4	68	39	2	11	46	1.53
31340870--31340920	25	2.0	25	96	0	93	37	1	15	45	1.58
31340917--31340950	17	1.9	18	88	5	52	55	0	5	38	1.24
31342135--31342180	22	2.1	22	100	0	92	41	13	4	41	1.63
31345559--31345601	20	2.2	20	87	8	61	39	2	13	44	1.57
31352829--31352877	19	2.7	19	78	18	59	53	0	4	42	1.20
31357436--31357673	125	1.9	125	80	2	280	24	14	15	44	1.84
31359366--31359432	6	10.7	6	85	7	89	46	1	2	49	1.26
31360964--31361024	31	2.0	31	81	12	72	52	1	0	45	1.10
31361146--31361179	6	5.7	6	92	0	59	17	52	0	29	1.45
31368362--31368422	29	2.0	31	81	12	74	57	0	9	32	1.32
31368714--31368764	25	2.0	26	84	3	68	47	1	0	50	1.12
31380148--31380210	30	2.1	31	90	3	101	26	25	6	41	1.79
31380157--31380204	15	3.2	15	71	11	53	27	22	8	41	1.82
31384776--31384899	30	4.1	30	92	1	194	28	22	6	42	1.78
31384786--31384893	15	7.2	15	71	12	87	28	20	7	43	1.78
31386253--31386311	31	1.9	31	86	13	86	54	3	0	42	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31390926--31390981	27	2.0	29	86	10	80	60	1	0	37	1.07
31390992--31391086	27	3.4	27	72	16	77	60	3	7	29	1.40
31391373--31391643	89	3.1	89	77	6	275	33	8	18	39	1.81
31391834--31391889	29	1.9	30	92	7	98	32	14	0	53	1.41
31393444--31393517	31	2.4	31	86	2	96	37	14	17	29	1.90
31395582--31395633	23	2.3	23	96	3	97	34	11	3	50	1.57
31395998--31396044	14	3.3	14	81	3	58	55	8	2	34	1.42
31399372--31399619	133	1.9	133	86	0	352	28	24	16	30	1.97
31399982--31400061	40	2.0	40	95	0	142	13	16	36	33	1.88
31402040--31402082	22	2.0	22	81	9	52	55	0	11	32	1.36
31402567--31402750	86	2.1	86	88	8	271	46	11	8	33	1.70
31417916--31417955	12	3.5	12	75	25	50	55	2	0	42	1.13
31422873--31422903	16	1.9	16	93	0	53	54	3	0	41	1.16
31425446--31425637	63	3.0	63	77	1	206	26	28	19	26	1.99
31426643--31426701	29	2.0	30	83	3	75	33	5	13	47	1.65
31428580--31428622	11	3.6	11	82	14	50	48	0	0	51	1.00
31430356--31430724	46	8.0	46	91	0	585	28	23	8	38	1.85
31434818--31434856	13	3.0	13	88	0	60	43	2	7	46	1.46
31439094--31439131	19	2.0	20	89	5	60	15	13	10	60	1.59
31451558--31451734	41	4.2	42	82	6	200	28	22	19	28	1.98
31456201--31456273	19	3.8	19	88	0	119	39	8	15	36	1.77
31457350--31457531	94	1.9	94	96	0	337	27	12	25	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31463427--31463458	3	11.0	3	93	6	57	68	0	0	31	0.90
31465191--31465220	15	1.9	16	93	6	53	53	0	0	46	1.00
31469553--31469623	28	2.5	29	88	6	110	69	0	2	28	1.03
31470167--31470202	19	1.9	18	88	5	54	55	13	8	22	1.65
31472466--31472832	17	20.7	17	73	10	236	44	10	12	31	1.77
31472640--31472739	20	5.3	19	75	10	89	43	9	12	36	1.73
31472642--31472764	56	2.2	55	85	4	167	44	10	12	32	1.76
31473124--31473148	5	5.0	5	100	0	50	80	0	0	20	0.72
31473326--31473350	7	3.6	7	100	0	50	0	12	0	88	0.53
31473319--31473360	18	2.3	18	88	8	59	0	16	0	83	0.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199