genome.fa.s18.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  166  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54087825--54087850	13	2.0	13	100	0	52	84	0	7	7	0.77
54094511--54094551	21	2.0	21	85	9	57	53	0	7	39	1.29
54095811--54095879	9	7.4	9	74	8	50	31	2	1	63	1.18
54095799--54095879	19	4.3	19	77	12	87	32	3	2	61	1.26
54096470--54096508	12	3.1	12	85	7	51	61	0	0	38	0.96
54100828--54100885	19	2.7	22	84	10	68	36	8	17	37	1.80
54100841--54100898	23	2.7	23	78	7	59	37	5	17	39	1.72
54100981--54101013	15	2.2	15	100	0	66	36	21	6	36	1.78
54102545--54102595	16	3.2	16	85	0	75	27	19	15	37	1.92
54107748--54108268	132	4.0	132	84	4	676	31	18	23	26	1.98
54108041--54108218	44	4.1	44	67	12	132	30	18	22	28	1.97
54107746--54108268	262	2.0	264	85	3	716	30	18	23	26	1.98
54108400--54108515	44	2.6	44	79	5	153	32	18	21	26	1.97
54108400--54108532	44	3.0	43	77	8	142	32	21	19	27	1.97
54108650--54108750	51	2.0	51	88	0	148	31	15	22	29	1.95
54108755--54108904	51	2.9	51	76	3	158	30	14	24	31	1.95
54108921--54109302	130	2.9	131	82	4	400	30	19	21	28	1.98
54108922--54109390	173	2.7	171	83	5	523	30	19	21	28	1.97
54108922--54109305	44	8.8	44	75	11	272	30	19	21	28	1.97
54108967--54109335	129	2.9	129	81	6	322	30	19	20	29	1.97
54111055--54111102	19	2.6	18	78	15	53	47	2	0	50	1.12
54111052--54111112	16	4.0	15	72	10	52	47	3	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54113870--54113907	17	2.2	17	86	9	51	42	0	0	57	0.98
54117685--54117715	2	15.5	2	93	0	53	45	0	0	54	0.99
54117682--54117720	18	2.2	18	95	4	71	41	0	0	58	0.98
54119033--54119080	24	2.0	24	95	0	87	52	8	18	20	1.71
54119800--54119840	21	2.0	21	90	0	64	31	9	2	56	1.45
54126152--54126185	5	6.6	5	93	6	59	17	2	0	79	0.86
54126151--54126185	16	2.2	16	94	0	61	17	2	0	80	0.84
54126717--54126775	28	2.1	28	81	6	66	23	3	5	67	1.26
54126920--54126981	28	2.3	27	82	2	70	33	11	8	46	1.69
54130559--54130629	35	2.0	35	81	5	81	57	9	2	29	1.45
54130649--54130734	24	3.7	24	75	17	67	46	2	9	41	1.48
54130698--54130778	22	3.6	22	80	9	101	54	1	6	38	1.33
54132785--54132841	28	2.0	28	100	0	114	47	24	10	17	1.79
54134697--54134756	3	20.0	3	100	0	120	33	0	0	66	0.92
54135238--54135278	5	8.2	5	83	0	55	17	2	4	75	1.08
54136663--54136697	16	2.2	16	94	0	61	25	11	20	42	1.85
54139440--54139473	9	3.8	9	88	11	52	88	0	0	11	0.52
54139440--54139473	17	1.9	18	94	5	61	88	0	0	11	0.52
54141259--54142312	88	12.0	88	88	2	1206	26	19	26	27	1.99
54141482--54141620	44	3.2	43	64	19	106	24	19	23	32	1.98
54141526--54141752	45	5.2	44	65	12	133	26	15	26	31	1.96
54141658--54141884	44	5.2	44	64	6	136	25	19	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54142610--54142922	127	2.5	125	86	3	410	32	17	21	28	1.96
54142632--54142829	42	4.7	42	72	9	134	31	16	21	29	1.96
54144149--54144220	3	24.0	3	83	10	94	31	0	2	65	1.07
54148743--54148776	9	3.9	9	84	7	52	44	0	2	52	1.16
54152783--54153003	112	2.0	112	94	1	390	38	14	3	42	1.63
54166489--54166534	15	3.3	14	82	8	51	84	6	2	6	0.84
54166494--54166535	15	2.8	15	85	7	59	85	4	2	7	0.80
54167406--54168530	154	7.3	153	84	5	1242	27	17	20	34	1.95
54167409--54168542	77	14.8	77	82	5	1108	27	17	20	33	1.96
54168737--54168873	29	4.7	30	87	4	199	34	24	2	38	1.70
54174107--54174163	20	2.9	20	81	2	71	35	0	7	57	1.26
54174156--54174197	22	2.0	22	95	4	77	33	0	0	66	0.92
54177536--54177595	25	2.7	20	75	22	57	61	5	1	31	1.27
54178226--54178271	19	2.3	19	88	7	65	60	2	0	36	1.09
54181739--54181803	25	2.6	25	87	0	94	23	30	13	32	1.93
54185189--54185221	6	5.5	6	100	0	66	48	0	33	18	1.48
54190852--54190899	20	2.4	20	89	0	69	16	29	20	33	1.95
54193812--54194026	33	6.5	34	79	6	174	28	6	22	42	1.79
54193816--54194026	17	12.7	17	74	8	166	27	7	22	42	1.79
54193837--54193966	50	2.6	49	77	7	136	27	8	22	41	1.82
54193902--54194027	49	2.5	50	82	7	150	29	6	19	44	1.75
54194145--54194199	26	2.1	26	89	0	83	25	16	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54200229--54200299	10	7.3	10	80	4	56	35	7	0	57	1.26
54200229--54200298	20	3.5	20	76	3	79	35	7	0	57	1.26
54207488--54207536	20	2.4	19	80	12	53	59	24	4	12	1.50
54212401--54212452	27	1.9	27	96	0	95	23	30	25	21	1.99
54220655--54220753	31	3.3	29	78	8	92	45	16	15	23	1.84
54222669--54222779	30	3.7	31	84	7	131	30	23	3	42	1.71
54222669--54222757	30	3.0	30	90	5	135	33	22	2	41	1.66
54222974--54223024	20	2.5	20	87	3	66	64	0	35	0	0.94
54222974--54223031	20	2.8	20	80	12	64	63	0	36	0	0.94
54223101--54223181	16	4.6	18	75	18	64	71	0	28	0	0.86
54223123--54223178	21	2.7	22	81	8	73	75	0	25	0	0.81
54223104--54223177	24	3.2	24	72	20	77	71	0	28	0	0.86
54223114--54223180	30	2.2	29	81	5	80	74	0	25	0	0.82
54223364--54223460	41	2.4	41	91	0	158	30	43	22	3	1.69
54223459--54223503	15	3.1	15	84	12	58	40	31	26	2	1.68
54223459--54223499	14	2.7	15	85	11	57	34	34	29	2	1.71
54223500--54223585	17	5.4	16	78	13	72	82	0	16	1	0.73
54223502--54223583	19	4.4	18	80	16	87	82	0	15	1	0.72
54223523--54223584	7	7.8	8	76	20	67	85	0	12	1	0.67
54223500--54223585	38	2.3	38	82	8	104	82	0	16	1	0.73
54223502--54223585	28	3.0	28	81	10	100	82	0	16	1	0.74
54223500--54223579	33	2.4	33	84	10	110	82	0	16	1	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54224098--54224389	18	16.5	18	72	10	226	30	12	8	48	1.71
54224107--54224388	17	15.9	17	70	10	122	29	12	9	48	1.72
54224098--54224395	34	8.5	35	77	9	220	29	12	9	49	1.70
54224228--54224311	16	5.0	16	72	16	64	27	9	7	55	1.58
54224321--54224396	37	2.1	35	81	13	84	27	9	10	52	1.66
54227153--54227250	45	2.2	46	90	3	162	31	25	21	21	1.98
54227153--54227250	23	4.3	23	86	2	144	31	25	21	21	1.98
54228808--54228834	13	2.1	13	100	0	54	44	29	18	7	1.77
54229765--54229823	6	8.6	7	83	12	54	27	1	1	69	1.07
54229792--54229826	3	11.7	3	100	0	70	31	0	0	68	0.90
54229835--54229891	27	2.2	26	84	9	71	31	7	8	52	1.59
54229842--54229892	27	2.0	27	88	11	81	29	3	9	56	1.49
54235837--54236329	88	5.7	88	88	2	719	28	27	23	20	1.99
54235837--54236318	175	2.8	173	88	3	693	28	26	23	20	1.99
54237987--54238020	15	2.3	15	94	0	59	26	8	0	64	1.22
54238012--54238077	29	2.2	30	84	7	82	36	6	4	53	1.46
54238039--54238083	20	2.1	20	88	12	63	37	2	2	57	1.23
54242532--54242693	3	54.3	3	76	9	118	27	6	3	62	1.36
54242798--54242859	21	3.0	20	77	11	61	20	3	1	74	1.05
54242813--54242858	17	2.8	16	80	9	56	23	2	2	71	1.08
54242813--54242859	8	5.6	8	80	9	58	23	2	2	72	1.06
54242814--54242860	9	5.4	9	82	2	53	21	2	2	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54242814--54242867	24	2.2	24	87	9	74	20	1	3	74	1.07
54242826--54242878	24	2.3	23	75	15	54	20	3	3	71	1.17
54257098--54257157	7	8.6	7	82	14	79	85	11	0	3	0.72
54257098--54257155	21	2.8	21	92	5	91	86	10	0	3	0.69
54257586--54257623	17	2.2	18	90	4	60	76	2	21	0	0.91
54257599--54257642	7	6.1	7	81	5	52	77	0	20	2	0.88
54258691--54259574	179	4.9	179	86	2	1109	29	16	25	29	1.96
54258679--54259592	224	4.1	224	80	7	1005	29	16	25	29	1.96
54258691--54259586	45	20.0	45	82	5	939	29	16	25	29	1.96
54262872--54263249	44	8.1	44	73	16	298	33	17	21	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199