genome.fa.s18.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  104  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34996499--34996574	38	2.0	38	86	0	107	32	10	18	38	1.85
34996635--34996909	43	6.5	43	79	4	249	28	20	16	34	1.94
34996729--34996882	41	3.7	41	86	5	177	29	21	14	34	1.93
35003031--35003071	11	3.8	11	80	6	57	0	24	0	75	0.80
35003030--35003069	21	1.9	21	94	0	71	0	22	0	77	0.77
35004327--35004363	19	2.0	19	85	15	51	45	2	2	48	1.30
35004928--35004986	11	5.3	11	83	2	73	22	30	1	45	1.62
35004928--35005002	33	2.2	34	81	9	91	25	26	1	46	1.61
35004928--35005002	22	3.4	22	80	15	91	25	26	1	46	1.61
35007397--35008344	22	42.8	22	76	10	770	42	31	0	25	1.61
35007397--35008344	43	21.4	43	78	8	809	42	31	0	25	1.61
35007397--35008344	44	21.4	44	81	6	945	42	31	0	25	1.61
35007974--35008033	14	4.1	14	75	8	57	48	33	0	18	1.48
35007973--35008036	30	2.2	29	88	2	92	48	34	0	17	1.47
35009648--35009696	25	2.0	25	83	0	62	6	20	8	65	1.41
35010275--35010327	6	8.5	6	77	8	52	13	5	5	75	1.16
35010353--35010383	3	10.3	3	100	0	62	32	0	0	67	0.91
35011434--35011464	14	2.3	14	94	5	55	70	12	16	0	1.16
35011675--35011712	20	1.9	20	100	0	76	5	13	5	76	1.13
35012608--35012666	25	2.5	25	84	13	72	35	5	1	57	1.31
35018245--35018352	33	3.4	33	66	21	93	41	8	34	15	1.77
35018229--35018354	63	2.0	63	96	0	234	40	7	36	15	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35018241--35018340	30	3.3	29	65	22	78	42	8	35	15	1.76
35021210--35021253	19	2.5	17	85	7	52	70	6	0	22	1.11
35021652--35021704	24	2.2	24	86	0	70	39	9	16	33	1.81
35023397--35023450	25	2.2	25	82	0	63	55	9	1	33	1.42
35023410--35023470	25	2.4	25	89	8	88	49	6	0	44	1.28
35026808--35026873	30	2.2	30	86	0	87	30	21	21	27	1.98
35028510--35028561	3	17.3	3	100	0	104	32	0	0	67	0.91
35036384--35036415	16	2.0	16	100	0	64	31	0	18	50	1.48
35036893--35036918	12	2.2	12	100	0	52	42	23	11	23	1.86
35037438--35037476	21	1.9	21	94	5	71	38	10	2	48	1.51
35040314--35040358	24	1.9	24	90	4	74	35	0	2	62	1.08
35040455--35040482	9	3.1	9	100	0	56	57	10	0	32	1.33
35040425--35040566	68	2.1	66	93	2	239	45	9	4	40	1.55
35040555--35040596	16	2.6	16	92	0	66	42	7	2	47	1.43
35040570--35040630	22	2.8	22	84	0	77	47	1	1	49	1.21
35040425--35040588	68	2.5	66	85	10	207	46	9	3	40	1.53
35046749--35046800	21	2.4	22	83	6	61	61	17	11	9	1.55
35049329--35049380	21	2.5	21	73	14	54	38	0	17	44	1.49
35049728--35049783	25	2.2	25	84	6	69	25	25	14	35	1.93
35049741--35049792	25	2.1	25	86	13	72	23	25	15	36	1.93
35049775--35049822	23	2.1	23	84	0	60	18	27	20	33	1.96
35050046--35050112	26	2.5	26	85	2	89	19	20	19	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35054166--35054227	26	2.4	26	88	0	97	35	12	12	38	1.82
35060877--35060915	19	2.1	19	95	0	69	48	12	10	28	1.74
35060832--35060934	54	1.9	54	91	0	170	43	14	9	32	1.78
35064606--35064666	25	2.4	25	78	10	63	37	3	1	57	1.25
35081380--35081414	6	5.8	6	100	0	70	51	0	17	31	1.45
35082627--35082685	31	1.9	31	89	0	91	50	8	18	22	1.73
35087801--35087868	18	3.8	18	71	19	52	29	1	4	64	1.21
35091882--35091926	19	2.3	20	88	3	65	48	0	24	26	1.51
35091873--35091916	12	3.6	12	80	14	54	54	0	20	25	1.45
35100098--35100131	18	1.9	18	94	5	61	70	0	29	0	0.87
35100655--35100694	16	2.5	15	88	11	62	50	0	25	25	1.50
35100764--35100843	36	2.2	36	84	4	106	46	0	22	31	1.52
35100780--35100841	18	3.4	18	72	16	65	41	0	22	35	1.54
35101025--35101070	23	2.0	23	95	0	83	19	21	19	39	1.93
35101060--35101107	21	2.3	21	89	7	71	16	25	25	33	1.96
35106153--35106192	16	2.5	16	88	11	64	25	25	0	50	1.50
35106550--35106647	40	2.5	40	84	0	124	36	23	20	19	1.95
35106715--35106911	41	4.8	40	78	6	146	15	23	28	32	1.95
35106742--35106871	41	3.2	40	82	7	147	14	24	27	33	1.94
35107291--35107337	20	2.3	20	96	3	85	34	4	6	55	1.45
35107622--35107672	27	1.9	26	88	4	75	41	0	11	47	1.40
35108992--35109043	27	1.9	27	88	7	79	44	0	11	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35110356--35110390	18	1.9	18	88	11	54	31	14	28	25	1.95
35115642--35115681	19	2.0	20	85	4	55	20	0	10	70	1.16
35118096--35118122	2	13.5	2	100	0	54	51	0	0	48	1.00
35123582--35123609	12	2.3	12	100	0	56	7	25	7	60	1.48
35124192--35124256	34	1.9	34	93	0	112	32	18	16	32	1.94
35124310--35124376	28	2.4	27	80	7	80	29	19	20	29	1.97
35126124--35126170	21	2.2	21	80	0	58	27	6	10	55	1.58
35130282--35130318	6	6.2	6	100	0	74	67	0	16	16	1.23
35130320--35130361	17	2.5	17	92	0	66	73	0	26	0	0.83
35130321--35130361	6	7.2	6	81	10	50	75	0	24	0	0.80
35131965--35132575	88	6.9	88	80	3	582	30	21	22	25	1.99
35131964--35132575	177	3.5	177	83	2	692	30	21	22	25	1.99
35132432--35132613	90	2.0	89	84	3	231	29	24	22	24	1.99
35132605--35133082	132	3.6	131	85	3	651	31	19	23	25	1.98
35133066--35133223	47	3.2	50	86	6	234	37	21	15	25	1.92
35133696--35133737	19	2.2	19	91	0	66	45	0	33	21	1.52
35133705--35133745	19	2.2	19	86	0	55	53	0	24	21	1.46
35134562--35134723	23	7.0	22	72	12	94	33	6	3	56	1.42
35134562--35134723	24	7.0	23	72	10	116	33	6	3	56	1.42
35134930--35134958	10	2.7	11	89	10	51	24	0	0	75	0.80
35137533--35137579	23	2.0	23	91	0	76	42	21	4	31	1.72
35138713--35138820	36	3.0	36	90	4	157	34	19	11	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35138719--35138828	35	3.1	36	89	5	161	32	20	10	36	1.87
35146165--35146204	19	2.1	19	85	4	53	35	2	2	60	1.24
35152262--35152429	32	5.3	32	81	0	203	38	20	20	20	1.93
35152263--35152429	64	2.6	64	87	2	248	38	20	20	20	1.94
35152450--35152514	27	2.5	26	85	9	96	38	23	20	18	1.93
35152633--35152808	27	6.6	27	83	5	189	23	21	19	35	1.96
35152658--35152808	27	5.7	27	87	3	216	23	21	19	34	1.97
35152658--35152808	79	1.9	80	90	1	241	23	21	19	34	1.97
35155558--35155627	27	2.6	27	93	0	122	24	22	20	32	1.97
35158783--35158979	42	4.7	41	82	6	198	32	24	16	26	1.96
35161986--35162170	95	1.9	95	92	0	307	29	21	22	25	1.99
35163474--35163550	29	2.5	31	79	8	95	22	23	10	44	1.83
35173882--35173953	29	2.5	29	86	4	92	22	30	9	37	1.86
35180117--35180476	47	7.6	47	91	2	567	33	8	29	28	1.86
35180117--35180476	96	3.8	96	95	1	629	33	8	29	28	1.86
35180117--35180476	143	2.5	141	91	2	567	33	8	29	28	1.86
35183998--35184026	15	1.9	15	100	0	58	79	20	0	0	0.74
35186994--35187218	40	5.7	40	85	5	287	24	21	28	25	1.99
35187033--35187241	80	2.6	79	83	7	221	26	20	27	25	1.99
35186994--35187241	119	2.1	119	80	7	272	25	21	27	25	1.99
35192826--35192917	48	1.9	48	97	0	175	32	0	18	48	1.48
35192847--35192882	13	2.8	13	91	4	56	33	0	16	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35195355--35195500	50	2.9	50	78	9	163	22	29	21	26	1.99
35201967--35201991	7	3.6	7	100	0	50	44	0	28	28	1.55
35203072--35203255	66	2.8	66	79	0	206	22	25	24	27	2.00
35206815--35206871	19	3.0	18	82	7	60	36	5	1	56	1.32
35212936--35213161	115	1.9	116	94	1	400	56	13	11	18	1.67
35217028--35217053	3	8.7	3	100	0	52	65	0	0	34	0.93
35218155--35218198	16	2.7	17	89	10	74	0	15	4	79	0.89
35218766--35219397	44	13.8	44	71	12	308	28	21	18	31	1.97
35218706--35219439	232	3.2	232	98	0	1416	27	21	18	32	1.97
35232243--35232268	3	8.7	3	100	0	52	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199