genome.fa.s18.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  108  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36036527--36036583	17	3.4	16	73	9	51	47	19	0	33	1.50
36036679--36036750	17	4.2	17	72	13	58	44	13	1	40	1.53
36036687--36036750	25	2.5	26	87	2	94	43	14	1	40	1.54
36037253--36037431	43	4.2	43	88	1	270	26	21	32	19	1.97
36037253--36037431	85	2.1	86	89	3	272	26	21	32	19	1.97
36038284--36038402	42	2.8	42	90	0	184	33	21	22	22	1.97
36038390--36038484	38	2.5	39	92	1	156	17	21	21	40	1.92
36038801--36038846	21	2.2	21	84	0	56	4	45	15	34	1.66
36044310--36044852	9	65.2	9	73	16	406	30	1	21	46	1.62
36044299--36044852	25	22.2	25	82	5	640	30	1	21	46	1.62
36044396--36044624	16	17.1	14	64	25	72	29	0	21	48	1.56
36044362--36044852	124	4.0	124	91	4	749	30	1	20	46	1.61
36044865--36045005	37	3.4	37	68	23	111	29	1	17	51	1.55
36044901--36044931	12	2.6	12	94	0	53	35	0	12	51	1.40
36044989--36045119	12	10.8	12	71	9	95	27	2	15	54	1.53
36044863--36045111	86	2.9	86	92	3	394	28	1	17	52	1.54
36045255--36045295	20	2.0	21	95	4	75	53	0	0	46	1.00
36045252--36045295	21	2.1	20	87	8	61	54	0	0	45	0.99
36045335--36045386	16	3.1	16	84	10	68	42	1	15	40	1.58
36045333--36045389	9	6.7	9	78	9	66	42	1	14	42	1.55
36047062--36047152	44	2.1	44	91	4	148	35	7	31	25	1.84
36048410--36048436	7	3.9	7	100	0	54	55	29	0	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36048688--36049068	115	3.3	114	75	8	299	27	22	18	30	1.97
36048995--36049136	73	1.9	73	85	4	196	30	23	16	29	1.96
36048863--36049311	188	2.4	188	79	9	475	28	22	16	32	1.96
36050373--36050397	13	1.9	13	100	0	50	72	0	28	0	0.86
36051427--36051487	29	2.1	30	87	9	90	32	14	6	45	1.71
36061602--36061671	25	2.8	25	80	8	72	24	22	24	28	1.99
36062336--36062420	40	2.1	40	97	0	161	25	4	22	47	1.71
36070183--36070222	21	1.9	21	90	10	64	50	17	5	27	1.67
36071789--36071816	11	2.5	11	100	0	56	67	0	0	32	0.91
36080415--36080448	17	1.9	18	88	5	52	2	26	38	32	1.71
36082233--36082275	13	3.1	14	84	12	54	60	0	0	39	0.97
36084749--36084838	3	30.0	3	80	0	99	57	1	6	34	1.32
36084748--36084836	24	3.8	24	86	5	121	56	1	6	35	1.33
36092089--36092144	26	2.2	26	80	6	60	35	21	3	39	1.71
36092100--36092152	13	4.1	13	80	9	63	37	22	5	33	1.78
36092100--36092152	26	2.0	26	88	0	79	37	22	5	33	1.78
36098651--36098708	29	2.0	29	89	0	89	31	1	34	32	1.68
36099005--36099065	11	5.4	11	73	7	50	65	0	29	4	1.13
36101408--36101442	14	2.4	15	85	9	54	42	0	2	54	1.15
36109548--36109674	67	1.9	67	90	3	202	28	31	18	21	1.97
36109826--36109948	57	2.1	60	85	13	166	23	24	20	31	1.98
36111990--36112028	18	2.2	18	100	0	78	48	7	10	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36112065--36112138	36	2.1	36	87	5	105	22	17	16	43	1.88
36114888--36115070	54	3.5	53	80	6	219	21	15	19	43	1.88
36114901--36115070	27	6.4	26	83	6	182	20	15	18	44	1.86
36129104--36129164	26	2.3	26	77	0	68	27	18	18	36	1.94
36134698--36134745	24	2.0	24	84	8	62	45	0	14	39	1.45
36135741--36135770	5	5.8	5	92	7	51	0	40	60	0	0.97
36149928--36149967	20	2.0	20	100	0	80	25	35	5	35	1.78
36154372--36154559	32	5.9	32	79	3	209	40	19	18	20	1.91
36154357--36154559	64	3.2	63	83	4	248	41	19	18	20	1.91
36154822--36155105	27	10.6	27	77	7	231	23	18	20	37	1.94
36154822--36155093	82	3.4	81	76	5	257	23	18	20	36	1.95
36154852--36155105	109	2.4	105	80	4	276	25	18	19	37	1.94
36159866--36160090	40	5.7	40	82	7	235	25	20	28	25	1.99
36159946--36160123	79	2.2	80	83	3	209	25	21	28	24	1.99
36167845--36168016	79	2.2	78	83	7	213	25	22	28	24	1.99
36167792--36168014	40	5.6	39	79	7	207	25	21	27	24	1.99
36167872--36168049	79	2.2	80	82	3	200	25	22	28	23	1.99
36172120--36172165	19	2.4	20	85	7	60	58	0	2	39	1.10
36177255--36177296	22	2.0	22	86	13	61	23	33	16	26	1.96
36184744--36184910	83	2.0	82	87	1	235	34	17	28	19	1.95
36184827--36184892	20	3.2	20	69	12	62	34	19	31	13	1.91
36184744--36184910	41	4.0	41	86	1	217	34	17	28	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36184807--36184910	21	5.0	21	65	9	61	32	19	29	18	1.95
36201100--36201139	19	2.0	19	85	9	53	62	10	10	17	1.53
36212234--36212264	6	5.2	6	96	0	53	67	3	16	12	1.35
36213688--36213843	28	5.6	28	86	1	206	30	23	23	22	1.99
36213687--36213843	84	1.9	84	87	2	235	30	23	22	22	1.99
36213961--36214041	26	3.1	26	78	0	99	35	22	19	22	1.96
36214249--36214378	54	2.4	53	80	10	129	22	16	18	43	1.88
36214273--36214525	27	9.4	27	81	3	258	20	15	20	42	1.89
36214320--36214583	81	3.2	80	81	5	203	21	14	20	44	1.86
36215912--36216042	27	4.8	27	71	7	95	22	13	18	45	1.85
36218636--36218701	33	2.0	33	84	0	87	25	27	24	22	2.00
36218670--36218815	28	5.2	28	84	6	172	31	23	20	24	1.98
36219140--36219418	27	10.3	27	76	6	179	20	14	18	45	1.85
36219142--36219418	54	5.1	53	77	4	234	20	14	18	46	1.84
36222090--36222463	28	13.3	28	71	11	178	29	25	22	22	1.99
36222048--36222507	227	2.0	227	94	1	798	30	26	21	21	1.98
36222519--36222611	26	3.5	26	80	1	96	36	22	22	18	1.95
36222790--36222868	27	3.0	27	92	3	135	31	13	11	43	1.80
36222849--36223213	27	13.5	27	79	8	305	20	17	16	44	1.86
36223461--36223503	20	2.2	19	84	12	52	16	44	23	16	1.86
36228284--36228338	24	2.2	25	90	3	85	34	21	7	36	1.81
36230168--36230192	8	3.1	8	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36232742--36232785	23	1.9	22	82	17	54	36	25	0	38	1.56
36232925--36233115	51	3.8	50	77	6	188	32	27	16	23	1.96
36232927--36233111	101	1.8	101	85	3	264	32	27	16	23	1.96
36236580--36236666	40	2.2	40	95	2	156	26	12	18	42	1.86
36237089--36237171	27	3.1	27	87	3	114	26	25	16	31	1.97
36237159--36237277	27	4.4	27	82	8	127	22	15	17	43	1.87
36250969--36251015	16	3.0	15	77	20	51	44	2	0	53	1.12
36250967--36251015	10	4.6	11	73	16	50	44	2	0	53	1.12
36250967--36251015	22	2.3	23	83	16	70	44	2	0	53	1.12
36251573--36251626	25	2.2	25	80	12	58	38	3	1	55	1.28
36253802--36253957	82	1.9	81	85	3	215	26	16	28	28	1.97
36253801--36253954	55	2.9	52	82	7	175	27	16	27	27	1.97
36253802--36253957	27	5.7	27	81	6	163	26	16	28	28	1.97
36253794--36253978	27	6.8	27	75	9	101	26	16	28	29	1.97
36253794--36253978	82	2.3	81	78	2	210	26	16	28	29	1.97
36261877--36262032	82	1.9	81	84	3	206	27	16	27	28	1.97
36261876--36262029	55	2.9	52	81	7	166	27	16	27	27	1.97
36261877--36262032	27	5.7	27	79	6	154	27	16	27	28	1.97
36261876--36262053	27	6.6	27	78	5	144	26	16	28	28	1.97
36261869--36262053	82	2.3	81	77	2	201	27	16	27	29	1.97
36265182--36265238	30	1.9	30	88	0	87	29	21	21	28	1.98
36276256--36276298	20	2.2	20	86	0	59	18	0	2	79	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36277014--36277044	12	2.6	12	94	0	53	16	16	29	38	1.90
36279138--36279185	5	9.4	5	97	2	87	37	0	0	62	0.95
36279957--36280080	28	4.5	28	89	5	198	29	21	25	24	1.99
36280182--36280255	26	2.8	26	80	10	80	33	25	22	17	1.96
36280468--36280692	54	4.2	53	84	7	258	19	17	21	41	1.90
36280495--36280692	27	7.4	27	89	3	274	18	17	21	42	1.89
36280470--36280692	81	2.8	80	83	4	288	18	17	21	42	1.90
36280500--36280750	81	3.1	81	82	4	265	19	15	20	43	1.88
36283153--36283196	22	2.0	23	86	13	65	54	4	2	38	1.33
36293000--36293188	51	3.8	49	81	6	218	29	15	25	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199