genome.fa.s18.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  51  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20207572--20207629	21	2.8	20	79	5	62	36	6	3	53	1.45
20208978--20209016	20	2.0	19	85	14	53	43	2	0	53	1.14
20210348--20210426	34	2.3	34	97	0	149	35	17	21	25	1.95
20216395--20216439	20	2.2	20	100	0	90	31	24	11	33	1.90
20221000--20221066	9	7.4	9	90	6	100	25	8	22	43	1.82
20221455--20221503	9	5.4	9	92	0	80	24	8	22	44	1.79
20221018--20221874	437	2.0	437	98	0	1651	31	16	18	33	1.93
20241282--20241326	23	2.0	22	82	4	54	31	6	8	53	1.58
20244252--20244362	49	2.3	50	85	6	147	56	4	6	32	1.44
20244624--20244681	3	19.3	3	86	13	84	63	0	0	36	0.94
20244623--20244681	15	3.9	16	93	6	97	62	0	0	37	0.95
20245103--20245160	22	2.6	22	84	7	73	43	17	3	36	1.66
20245116--20245194	21	3.8	19	77	12	68	37	16	7	37	1.77
20245150--20245193	21	2.1	21	95	0	79	36	13	9	40	1.76
20249129--20249153	6	4.2	6	100	0	50	20	0	0	80	0.72
20249243--20249279	16	2.3	17	86	13	60	62	0	0	37	0.96
20252452--20252494	20	2.1	21	91	4	70	53	4	32	9	1.53
20268275--20268357	20	4.4	20	79	10	86	26	8	22	42	1.82
20268287--20268366	9	8.8	9	74	8	54	26	8	25	40	1.84
20272318--20272364	19	2.5	19	86	3	60	25	8	0	65	1.20
20272329--20272380	23	2.3	22	83	12	61	23	3	0	73	1.00
20273595--20274010	217	1.9	214	90	2	654	36	17	16	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20273595--20274013	109	3.9	109	91	2	650	36	17	15	30	1.92
20274066--20274096	15	2.1	15	93	0	53	64	6	9	19	1.45
20295016--20295079	21	3.0	21	77	8	58	37	6	3	53	1.42
20295064--20295101	19	2.0	19	85	10	51	44	13	0	42	1.43
20314026--20314064	10	3.9	10	79	0	51	58	0	0	41	0.98
20314026--20314064	20	2.0	20	89	0	60	58	0	0	41	0.98
20314056--20314143	36	2.5	35	81	7	106	63	2	4	29	1.26
20314369--20314401	12	3.0	11	87	12	50	45	0	0	54	0.99
20314365--20314495	18	6.8	18	70	19	61	33	2	0	63	1.12
20314380--20314471	21	4.7	20	70	11	57	38	1	0	60	1.04
20314380--20314503	27	4.3	29	80	12	116	33	2	0	63	1.13
20314365--20314503	19	7.2	19	69	17	56	33	2	0	64	1.11
20330182--20330589	46	9.6	45	83	12	451	35	14	21	28	1.93
20330218--20330454	36	6.0	36	86	9	222	37	13	20	28	1.91
20330182--20330589	128	3.2	126	85	10	539	35	14	21	28	1.93
20330223--20330546	164	2.0	164	95	0	576	36	13	20	29	1.92
20331400--20331434	17	2.2	15	90	10	52	28	0	14	57	1.38
20336216--20336240	9	2.8	9	100	0	50	24	12	0	64	1.27
20337770--20337802	17	1.9	17	88	11	50	39	12	3	45	1.57
20342596--20342725	37	3.3	40	77	9	133	33	22	16	27	1.96
20342586--20342726	40	3.6	40	74	13	132	31	22	17	28	1.96
20342596--20342743	78	1.9	77	86	10	212	34	21	17	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20342855--20342879	11	2.3	11	100	0	50	56	8	0	36	1.29
20343058--20343115	9	6.4	9	81	0	71	39	20	12	27	1.88
20343066--20343115	18	2.8	18	90	0	82	38	22	14	26	1.91
20343058--20343115	27	2.1	27	90	0	89	39	20	12	27	1.88
20343278--20343307	12	2.5	12	94	0	51	33	0	0	66	0.92
20343320--20343363	18	2.4	18	88	0	61	13	2	43	40	1.57
20351627--20351680	28	1.9	28	84	0	72	22	1	29	46	1.62
20358843--20358872	14	2.1	14	93	0	51	50	20	0	30	1.49
20365266--20365300	17	2.1	17	100	0	70	34	17	14	34	1.90
20371549--20371598	2	25.0	2	100	0	100	0	50	0	50	1.00
20376743--20376787	22	2.1	21	87	4	63	64	2	31	2	1.18
20376739--20376785	18	2.5	20	79	10	62	63	2	31	2	1.18
20378460--20378509	6	8.3	6	84	0	64	0	32	38	30	1.58
20380206--20380287	38	2.2	38	95	0	146	40	2	3	53	1.32
20380436--20380549	29	4.1	29	76	11	139	50	14	1	33	1.54
20380457--20380528	8	8.4	8	73	14	63	47	15	1	36	1.54
20380431--20380783	27	14.3	26	74	21	291	53	13	1	32	1.47
20380591--20380783	22	7.9	27	74	20	149	54	12	1	32	1.45
20380491--20380792	70	4.3	70	83	12	352	54	12	0	31	1.45
20380495--20380917	48	9.4	45	74	18	252	54	12	0	31	1.43
20380610--20380917	22	14.1	21	68	21	100	55	12	0	31	1.42
20380842--20380919	20	3.8	20	81	8	86	55	11	0	33	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20381088--20381119	14	2.2	15	94	5	57	0	37	0	62	0.95
20381084--20381122	14	2.9	13	85	14	53	0	35	0	64	0.94
20383411--20383435	6	4.2	6	100	0	50	52	0	32	16	1.44
20383788--20383900	53	2.1	54	95	3	210	28	11	12	47	1.76
20384296--20384382	40	2.2	40	95	2	156	34	6	14	43	1.73
20386044--20386073	15	2.0	15	100	0	60	20	26	20	33	1.97
20387917--20387998	25	3.2	25	62	21	60	41	12	12	34	1.80
20387919--20388025	53	2.0	53	100	0	214	37	13	11	38	1.80
20388437--20388476	14	2.9	13	85	10	53	37	2	12	47	1.55
20388446--20388511	35	1.9	34	90	6	107	33	6	12	48	1.65
20388501--20388579	33	2.4	32	85	4	104	26	10	17	45	1.80
20388589--20388640	18	2.7	20	74	17	56	36	3	0	59	1.16
20389192--20389235	22	2.0	22	100	0	88	31	9	31	27	1.88
20390082--20390108	14	1.9	14	100	0	54	29	22	18	29	1.97
20390607--20390640	17	2.0	17	88	0	50	52	0	0	47	1.00
20390593--20390758	83	2.0	83	90	1	262	59	0	3	36	1.15
20390587--20390757	42	4.1	42	87	4	247	60	0	3	36	1.14
20393943--20394035	46	2.0	46	100	0	186	17	19	20	43	1.89
20394727--20394769	4	10.8	4	100	0	86	25	0	23	51	1.49
20395069--20395101	2	16.5	2	100	0	66	51	0	48	0	1.00
20403696--20403769	22	3.5	22	73	14	73	28	0	24	47	1.52
20404925--20405076	39	3.9	38	75	3	142	30	21	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20407152--20407189	18	2.1	18	85	9	51	39	0	2	57	1.12
20412743--20412816	37	2.0	37	94	0	130	50	14	14	20	1.78
20425654--20425691	18	2.1	18	85	9	51	47	2	0	50	1.15
20430894--20430930	16	2.3	16	100	0	74	37	5	35	21	1.77
20430910--20431004	45	2.1	44	88	5	138	30	5	29	34	1.80
20431160--20431194	18	2.0	17	88	5	52	54	0	0	45	0.99
20431257--20431308	14	3.6	14	75	14	52	53	0	1	44	1.11
20431154--20431374	117	1.9	120	90	5	360	51	4	1	42	1.34
20434000--20434092	46	2.0	46	95	0	168	40	20	12	25	1.88
20437942--20438035	46	2.0	46	91	0	152	30	26	7	35	1.84
20467955--20467995	21	2.0	21	90	0	64	19	29	21	29	1.98
20474311--20474344	15	2.3	15	90	10	52	55	2	0	41	1.15
20474465--20474489	12	2.1	12	100	0	50	28	0	8	64	1.22
20474432--20474538	36	3.0	36	68	15	94	25	0	15	58	1.37
20474512--20474713	103	1.9	105	88	6	302	32	0	13	53	1.40
20474557--20474916	103	3.6	101	78	13	359	31	0	14	53	1.46
20474823--20474857	15	2.2	17	90	10	56	40	0	0	60	0.97
20474734--20474965	104	2.2	105	87	5	319	31	0	12	55	1.41
20474928--20474963	17	2.2	16	90	9	56	33	0	5	61	1.19
20491987--20492014	7	4.0	7	100	0	56	0	42	14	42	1.45
20492164--20492199	16	2.2	16	90	0	54	30	0	30	38	1.58
20492435--20492469	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20492534--20492575	15	2.8	15	85	7	59	52	2	0	45	1.13
20492413--20492702	119	2.4	121	90	5	473	48	4	3	43	1.40
20492750--20492797	26	1.9	25	84	16	64	52	2	0	45	1.12
20492706--20492933	92	2.5	92	82	8	234	47	3	3	45	1.37
20496153--20496874	97	7.5	97	96	1	1362	38	8	12	40	1.73
20496152--20496874	384	1.9	384	97	1	1232	39	8	12	40	1.73
20496954--20496980	13	2.1	13	100	0	54	37	0	7	55	1.28
20508301--20508350	17	2.9	16	76	23	57	58	0	8	34	1.28
20514685--20514734	3	16.0	3	87	8	73	32	2	4	62	1.25
20514790--20514827	18	2.1	19	90	5	60	42	7	0	50	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199