genome.fa.s18.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  52  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20514848--20514912	24	2.7	24	80	4	69	41	7	1	49	1.41
20514939--20514998	22	2.7	22	84	2	66	40	10	1	48	1.47
20514956--20515013	23	2.5	24	80	11	66	39	13	0	46	1.44
20515377--20515416	14	2.9	14	82	14	55	25	0	2	72	0.97
20515382--20515421	20	2.0	20	85	9	55	20	2	2	75	1.04
20516921--20516954	17	1.9	17	88	5	50	44	17	0	38	1.49
20517992--20518113	23	5.3	23	91	0	199	30	27	21	21	1.98
20518339--20518377	18	2.2	17	86	13	53	46	20	0	33	1.51
20521017--20521109	31	2.9	31	80	4	96	56	1	3	38	1.22
20524476--20524706	120	1.9	120	89	3	358	26	28	9	34	1.89
20529671--20529710	2	20.0	2	84	0	53	50	0	7	42	1.30
20533295--20533336	3	14.0	3	100	0	84	66	0	0	33	0.92
20536103--20536190	43	2.0	46	86	8	128	30	5	1	62	1.26
20536098--20536190	47	1.9	49	86	4	136	30	6	1	62	1.27
20537435--20537519	30	2.8	30	94	0	152	23	22	7	47	1.76
20537435--20537512	15	5.2	15	67	11	61	24	21	7	46	1.77
20542087--20542180	30	3.1	30	90	1	143	25	24	6	43	1.78
20542097--20542174	15	5.2	15	67	11	61	25	21	7	44	1.79
20551833--20551892	25	2.4	25	88	5	86	18	28	23	30	1.98
20556519--20556584	19	3.6	19	79	4	73	40	1	0	57	1.08
20558329--20558379	27	1.9	26	84	4	66	31	25	13	29	1.94
20560822--20560860	12	3.2	12	85	0	51	53	17	0	28	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20565329--20565621	106	2.8	106	91	1	453	33	20	15	30	1.94
20567162--20567335	92	1.9	92	95	0	312	24	13	10	50	1.74
20568056--20568436	131	2.9	131	90	2	579	24	24	20	29	1.99
20567974--20568482	175	2.9	173	84	4	585	24	24	21	29	1.99
20568015--20568480	44	10.6	44	75	6	356	24	24	21	30	1.99
20569701--20569733	15	2.3	14	94	5	57	24	0	0	75	0.80
20580190--20580427	106	2.2	106	96	0	440	32	19	15	32	1.93
20581971--20582142	85	2.0	85	97	0	326	25	15	11	48	1.78
20582651--20582712	31	2.0	32	87	6	92	32	3	0	64	1.09
20582663--20582711	16	3.1	16	80	16	66	32	0	0	67	0.91
20584954--20584999	12	3.8	12	80	5	56	15	23	15	45	1.84
20590237--20590276	12	3.4	11	86	13	53	85	0	12	2	0.71
20596976--20597011	19	1.9	18	88	5	54	55	19	0	25	1.43
20603064--20603254	41	4.6	41	91	0	292	30	18	26	24	1.98
20621069--20621117	25	2.0	24	88	4	71	67	8	0	24	1.18
20622096--20622120	12	2.1	12	100	0	50	0	92	8	0	0.40
20622632--20622682	21	2.4	21	83	6	68	41	1	0	56	1.10
20624030--20624079	20	2.5	20	75	12	66	54	10	2	34	1.45
20631822--20631846	12	2.1	12	100	0	50	0	0	8	92	0.40
20645528--20645576	25	2.0	25	91	0	80	38	16	20	24	1.92
20648524--20648803	46	6.6	45	84	10	299	35	14	21	28	1.93
20648562--20648672	37	3.0	37	93	0	186	38	13	19	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20650718--20651094	125	3.0	125	84	4	517	29	16	22	31	1.96
20654385--20654459	11	6.9	11	69	24	61	42	1	30	25	1.63
20654385--20654459	22	3.5	22	74	20	77	42	1	30	25	1.63
20656194--20656220	6	4.5	6	100	0	54	51	0	0	48	1.00
20656862--20656890	7	4.1	7	100	0	58	41	31	0	27	1.56
20661095--20661154	23	2.5	25	86	10	97	41	1	0	56	1.09
20666214--20666382	82	2.1	82	94	0	293	25	18	13	42	1.87
20667510--20667774	141	1.9	141	95	0	476	27	15	18	38	1.90
20669766--20669845	34	2.3	35	76	4	92	32	8	3	55	1.49
20671730--20671755	13	2.0	13	100	0	52	30	7	15	46	1.74
20680069--20680325	111	2.3	111	97	0	487	40	6	9	43	1.63
20680279--20680322	22	1.9	23	81	9	54	45	0	2	52	1.13
20695383--20695451	3	23.0	3	77	16	72	30	4	1	63	1.22
20695380--20695451	18	4.1	18	82	10	87	30	4	1	63	1.21
20700261--20700321	13	4.5	13	73	15	52	78	1	14	4	0.99
20700305--20700369	29	2.3	27	82	7	76	70	6	10	12	1.32
20700756--20700796	13	3.1	13	82	6	55	63	0	21	14	1.30
20700744--20700803	7	8.6	7	83	7	59	70	0	18	11	1.17
20702043--20703238	87	13.7	87	91	0	1890	30	22	22	24	1.99
20709470--20709508	18	2.2	17	86	13	53	33	0	20	46	1.51
20709736--20709832	23	4.2	23	86	0	140	23	21	25	28	1.99
20709734--20709832	46	2.2	46	90	0	162	24	21	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20735077--20735137	13	4.7	13	74	8	52	27	6	24	40	1.80
20735079--20735140	26	2.4	26	73	10	63	30	6	24	38	1.80
20735288--20735312	10	2.5	10	100	0	50	44	0	0	56	0.99
20738365--20738401	3	12.3	3	100	0	74	35	0	0	64	0.94
20738400--20738455	3	18.7	3	96	0	85	28	0	37	33	1.58
20753222--20753273	24	2.2	24	89	0	77	36	3	9	50	1.54
20757648--20757698	24	2.1	24	88	0	75	35	3	9	50	1.54
20762151--20762184	15	2.2	16	89	5	52	67	0	0	32	0.91
20764010--20764216	63	3.3	63	76	2	202	24	20	25	30	1.98
20764010--20764242	126	1.8	126	83	5	310	24	20	25	28	1.99
20776196--20776264	20	3.3	20	70	16	59	49	1	4	44	1.31
20777431--20777483	19	2.7	19	80	8	54	73	1	3	20	1.08
20778845--20778889	19	2.3	20	85	11	58	53	2	0	44	1.13
20781864--20781892	12	2.3	13	94	5	51	72	3	0	24	1.00
20783249--20783301	23	2.4	22	76	20	56	9	18	1	69	1.25
20797789--20797829	21	2.0	21	90	0	64	19	29	21	29	1.98
20809931--20809972	20	2.1	21	86	8	61	33	0	0	66	0.92
20809930--20810029	17	5.7	18	75	9	82	34	0	2	64	1.05
20812002--20812040	12	3.3	12	85	7	53	53	0	2	43	1.14
20811973--20812034	32	1.9	32	83	6	81	53	1	6	38	1.37
20814257--20814281	3	8.3	3	100	0	50	68	0	0	32	0.90
20818649--20818673	12	2.1	12	100	0	50	24	0	44	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20823065--20823102	19	2.0	20	84	5	51	34	2	2	60	1.24
20824230--20824295	22	3.0	22	81	0	60	7	15	22	54	1.66
20825786--20825822	12	3.1	12	88	11	58	48	0	18	32	1.49
20841123--20841186	25	2.5	25	76	16	60	67	6	6	20	1.35
20841168--20841205	12	3.2	12	85	3	51	78	5	0	15	0.91
20841168--20841205	18	2.2	17	90	4	58	78	5	0	15	0.91
20842833--20842873	21	1.9	22	85	5	57	70	0	4	24	1.06
20842883--20842960	23	3.5	23	78	15	76	69	5	0	25	1.09
20842893--20842968	7	10.6	7	74	14	57	68	6	0	25	1.13
20842882--20842974	21	4.2	22	71	22	79	69	5	1	23	1.15
20842906--20843008	44	2.4	46	78	18	114	70	5	2	20	1.21
20849444--20849512	27	2.8	26	82	10	74	59	2	30	7	1.39
20849461--20849520	27	2.2	27	90	0	93	51	3	30	15	1.59
20852623--20852788	51	3.3	51	96	0	305	28	21	15	34	1.94
20857750--20857857	3	36.0	3	100	0	216	66	0	33	0	0.92
20857839--20858318	239	2.0	239	100	0	960	35	14	13	37	1.85
20860550--20860588	11	3.5	11	82	0	51	48	2	0	48	1.15
20864693--20864721	13	2.2	13	100	0	58	27	20	10	41	1.85
20868763--20868827	34	1.9	34	87	0	94	49	20	9	21	1.76
20873593--20873647	20	2.6	21	77	5	58	36	1	16	45	1.58
20877521--20877554	17	2.0	17	94	0	59	44	50	0	5	1.26
20882151--20882184	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20885559--20885612	21	2.6	21	84	0	72	29	5	29	35	1.80
20904041--20904156	58	2.0	58	98	0	223	42	13	16	27	1.86
20907252--20907867	44	14.3	43	74	8	430	23	21	23	31	1.98
20907277--20907866	87	6.9	84	72	13	372	23	22	22	31	1.98
20907315--20907869	131	4.3	131	88	2	730	23	22	22	31	1.98
20907970--20908656	44	15.6	44	70	10	313	27	22	20	29	1.98
20908230--20908481	46	5.6	46	76	9	248	27	23	20	28	1.99
20908141--20908482	180	1.9	180	86	2	490	26	23	21	28	1.99
20907973--20908571	134	4.5	131	79	7	556	27	22	20	29	1.98
20909935--20909986	7	7.7	7	78	8	54	13	13	0	73	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199