genome.fa.s18.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  175  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56269661--56269728	16	4.2	16	96	0	118	33	0	22	44	1.53
56269659--56269723	7	8.4	7	75	18	58	32	0	23	44	1.53
56269647--56269727	23	3.4	23	73	9	83	30	0	23	45	1.53
56269623--56269750	48	2.7	47	75	12	120	35	1	17	46	1.58
56269708--56269850	34	4.5	31	76	11	146	39	4	12	44	1.62
56269723--56269851	65	2.0	65	98	0	249	39	5	10	44	1.63
56274710--56274928	41	5.3	41	87	3	289	36	26	23	13	1.92
56274710--56274928	83	2.7	80	84	5	278	36	26	23	13	1.92
56274992--56275084	40	2.3	40	80	5	100	16	29	23	31	1.96
56276830--56276981	67	2.2	66	75	5	144	27	18	22	31	1.97
56277586--56277782	90	2.2	91	79	8	204	42	15	8	33	1.77
56277851--56277897	21	2.3	21	88	3	78	29	19	14	36	1.92
56277899--56278142	89	2.7	89	82	5	280	36	11	19	33	1.87
56279595--56279659	33	2.0	33	87	6	96	46	1	0	52	1.10
56282288--56282340	26	2.0	28	88	7	83	45	11	20	22	1.83
56284085--56284110	13	2.0	13	100	0	52	38	7	7	46	1.61
56284266--56284310	22	2.0	22	87	8	65	40	0	2	57	1.11
56293023--56293340	41	7.8	40	75	8	234	16	23	22	37	1.93
56293022--56293305	82	3.5	80	82	6	336	15	23	22	38	1.93
56293021--56293283	123	2.1	123	77	6	282	15	23	22	38	1.92
56293857--56293894	15	2.5	15	86	0	58	18	0	44	36	1.50
56293830--56293897	15	4.9	14	74	13	52	22	0	36	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56295596--56295632	10	3.7	10	92	0	65	43	0	13	43	1.44
56298264--56298288	13	1.9	13	100	0	50	40	24	0	36	1.55
56298353--56298533	34	5.7	33	69	19	134	48	10	0	40	1.42
56298378--56298428	22	2.4	22	90	3	86	49	9	0	41	1.36
56298458--56298492	13	2.7	13	95	0	61	51	8	0	40	1.33
56298402--56298531	69	1.9	69	96	0	242	47	10	0	40	1.44
56298353--56298479	56	2.3	56	100	0	254	48	10	0	40	1.37
56298405--56298534	34	3.8	34	83	9	174	48	10	0	40	1.44
56298557--56298687	9	15.9	9	69	17	70	44	16	3	35	1.64
56298549--56298674	25	5.2	25	71	9	91	46	15	2	34	1.59
56298563--56298682	16	7.9	16	66	19	78	45	16	2	35	1.61
56304133--56304277	66	2.2	66	83	4	177	40	15	28	14	1.87
56304260--56304360	21	4.8	21	83	0	103	36	16	40	5	1.73
56304704--56305059	43	8.3	43	76	3	304	23	19	29	27	1.98
56304704--56304956	130	2.0	129	83	5	323	21	17	30	29	1.97
56304724--56304976	86	2.9	86	89	2	373	22	18	31	28	1.97
56306712--56306823	27	3.8	32	85	14	145	20	1	33	44	1.62
56307120--56307160	21	2.0	21	85	9	57	58	2	14	24	1.49
56312144--56312208	28	2.3	28	86	2	94	36	9	3	50	1.50
56314376--56314438	30	2.0	32	84	6	85	52	22	1	23	1.56
56317292--56317338	21	2.2	22	92	3	78	21	38	19	21	1.94
56324037--56324083	8	5.6	8	80	9	58	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56325817--56325845	3	9.7	3	100	0	58	68	0	31	0	0.89
56325871--56325988	6	19.7	6	85	0	119	48	12	15	23	1.79
56325886--56326000	6	19.2	6	83	7	54	48	11	14	25	1.77
56329736--56329852	44	2.7	44	82	11	150	28	26	20	24	1.99
56330747--56330790	15	3.1	14	80	12	54	43	6	0	50	1.29
56332973--56333011	14	3.0	13	85	10	53	58	0	0	41	0.98
56332973--56333013	13	3.1	14	89	6	59	58	0	0	41	0.98
56333778--56333820	20	2.2	20	100	0	86	27	9	13	48	1.73
56335143--56335235	32	2.9	32	91	0	150	51	17	4	26	1.63
56335235--56335291	16	3.5	16	72	11	53	49	17	1	31	1.57
56341217--56341274	22	2.7	21	82	15	73	37	25	13	22	1.91
56345270--56345294	11	2.3	11	100	0	50	20	16	28	36	1.93
56350933--56350966	16	2.1	16	100	0	68	11	32	5	50	1.63
56357308--56357346	20	1.9	21	84	5	53	58	5	10	25	1.51
56357459--56357501	22	2.0	22	90	0	68	51	0	0	48	1.00
56369617--56369658	21	2.0	21	86	13	59	35	0	2	61	1.09
56369619--56369685	23	3.0	22	77	20	57	34	0	2	62	1.10
56372316--56372347	9	3.8	9	84	16	50	59	0	9	31	1.29
56373694--56373726	17	1.9	17	93	0	57	15	0	9	75	1.03
56374750--56374800	20	2.5	20	77	0	57	41	3	0	54	1.19
56375204--56375256	16	3.5	16	69	23	51	66	5	1	26	1.25
56375338--56375385	24	2.0	24	95	0	87	31	8	10	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56380237--56380289	26	2.0	28	88	7	83	22	20	11	45	1.83
56382514--56382542	14	2.1	14	100	0	58	27	13	20	37	1.91
56384761--56384788	10	2.8	10	100	0	56	60	0	0	39	0.97
56387017--56387068	24	2.2	24	89	0	77	32	11	11	44	1.77
56387023--56387070	24	2.0	24	95	0	87	29	10	12	47	1.74
56391829--56391866	14	2.9	14	88	7	53	60	0	0	39	0.97
56393643--56393688	18	2.4	19	82	10	58	32	6	19	41	1.77
56396361--56396439	31	2.5	31	81	4	88	20	12	20	46	1.82
56401455--56401500	24	1.9	24	81	0	56	32	8	8	50	1.64
56402982--56403040	18	3.3	18	83	4	75	64	1	6	27	1.28
56403078--56403133	19	2.9	19	74	12	60	66	0	8	25	1.21
56403337--56403379	20	2.2	20	95	0	77	27	6	0	65	1.18
56405928--56406013	38	2.3	37	82	9	113	26	17	19	36	1.94
56407838--56407994	41	3.8	41	90	0	242	33	28	19	19	1.96
56409117--56409148	16	1.9	17	93	6	57	37	21	0	40	1.54
56409310--56409464	41	3.7	41	78	10	154	29	29	19	22	1.98
56410278--56410336	28	2.0	31	83	9	79	49	3	1	45	1.28
56419526--56419593	24	3.0	21	73	21	57	27	8	4	58	1.47
56419526--56419593	23	3.0	22	76	17	68	27	8	4	58	1.47
56419526--56419593	25	3.0	22	74	14	66	27	8	4	58	1.47
56424980--56425610	120	5.2	120	94	2	1016	44	2	5	48	1.37
56425435--56425469	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56425555--56425591	19	2.0	19	85	15	51	45	0	0	54	1.00
56425827--56425896	17	4.2	17	98	1	126	37	38	0	24	1.56
56425827--56425896	33	2.1	33	94	5	124	37	38	0	24	1.56
56433657--56433702	19	2.3	20	78	14	51	43	0	15	41	1.46
56435416--56435518	46	2.3	45	88	6	163	40	8	21	29	1.83
56436204--56436426	91	2.5	91	80	4	227	36	14	11	37	1.83
56436273--56436447	90	2.0	89	83	3	226	36	18	12	32	1.88
56436240--56436468	91	2.6	90	79	5	223	35	17	12	34	1.87
56436240--56436480	90	2.7	90	77	6	222	35	18	11	34	1.87
56436674--56436759	19	4.4	19	79	13	95	62	1	3	32	1.19
56436673--56436749	20	3.8	20	80	11	95	63	0	3	32	1.12
56436685--56436772	39	2.3	38	81	11	99	60	1	3	35	1.21
56436751--56436807	18	3.2	18	71	11	55	63	1	5	29	1.27
56436777--56436815	10	3.9	10	83	10	53	66	0	2	30	1.05
56436674--56436815	19	7.4	19	72	15	64	62	1	4	31	1.23
56436850--56436906	19	2.9	20	78	5	71	64	0	8	26	1.22
56437109--56437149	18	2.2	20	91	8	68	26	7	0	65	1.18
56441020--56441123	38	2.7	38	83	0	127	25	22	19	33	1.97
56444675--56444796	43	2.9	43	84	4	142	27	28	18	25	1.98
56445106--56445197	21	4.4	21	78	5	78	6	42	15	35	1.73
56445167--56445312	66	2.2	66	86	4	197	13	28	17	40	1.87
56445167--56445338	66	2.6	65	82	4	175	13	27	18	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56446835--56446871	14	2.4	17	86	13	53	48	0	0	51	1.00
56447021--56447071	14	3.6	14	74	7	50	68	0	13	17	1.21
56447060--56447093	16	2.1	16	88	5	50	76	5	14	2	1.09
56447787--56447835	18	2.7	18	93	0	80	36	0	8	55	1.30
56447789--56447836	3	16.0	3	82	0	60	35	0	6	58	1.23
56447789--56447836	12	4.0	12	91	0	69	35	0	6	58	1.23
56447977--56448047	24	2.9	24	78	14	65	43	0	22	33	1.54
56448191--56448286	39	2.5	39	80	6	108	20	23	28	27	1.99
56454296--56454332	14	2.4	17	86	13	53	48	0	0	51	1.00
56454482--56454532	14	3.6	14	74	7	50	68	0	13	17	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199