genome.fa.s18.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  164  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53591506--53591781	138	2.0	138	92	0	453	42	35	6	15	1.73
53591804--53591854	13	3.8	13	82	7	57	39	33	9	17	1.83
53594857--53594898	5	8.6	5	92	5	59	61	4	0	33	1.17
53595240--53595303	30	2.1	30	82	0	74	50	7	1	40	1.41
53599662--53599698	19	2.0	19	85	15	51	32	16	5	45	1.70
53601583--53601643	29	2.1	28	84	3	77	21	0	24	54	1.45
53607451--53607501	21	2.4	21	87	6	68	17	41	5	35	1.74
53610736--53610804	33	2.1	33	97	0	129	36	5	8	49	1.58
53611238--53611301	22	2.8	24	80	17	82	54	1	3	40	1.25
53625731--53625760	3	10.0	3	92	0	51	30	0	3	66	1.07
53630297--53630329	7	4.7	7	85	14	50	72	0	15	12	1.12
53630297--53630337	21	2.0	21	85	9	57	70	0	14	14	1.16
53631618--53632263	133	4.9	133	88	2	949	28	19	24	27	1.98
53631618--53632263	266	2.4	266	92	1	1055	28	19	24	27	1.98
53632156--53632370	107	2.0	107	93	1	369	28	22	20	27	1.99
53632027--53632503	240	2.0	240	87	4	685	28	20	22	27	1.99
53632265--53633021	133	5.7	133	85	4	940	29	19	23	27	1.98
53631890--53632636	373	2.0	373	96	0	1361	29	20	23	27	1.99
53631761--53632762	506	2.0	506	90	1	1596	29	20	23	26	1.99
53634560--53634589	3	10.0	3	92	0	51	30	0	3	66	1.07
53636165--53636228	22	2.8	24	75	17	73	54	1	4	39	1.31
53638141--53638211	30	2.4	30	88	2	99	38	19	23	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53643311--53643348	19	2.1	19	85	14	53	31	15	5	47	1.68
53645230--53645290	29	2.1	28	84	3	77	21	0	24	54	1.45
53651101--53651151	21	2.4	21	87	6	68	17	41	5	35	1.74
53654387--53654455	33	2.1	33	94	0	120	37	5	7	49	1.55
53654733--53654783	25	2.1	25	82	7	61	52	1	1	43	1.23
53654888--53654951	22	2.8	24	75	17	73	54	1	4	39	1.31
53660138--53660188	25	2.1	25	82	7	61	52	1	1	43	1.23
53660294--53660335	22	1.9	22	85	9	59	59	2	4	33	1.31
53666867--53667056	9	19.8	9	66	22	59	62	5	2	30	1.30
53666934--53667056	19	6.2	20	68	20	55	62	7	0	29	1.27
53666945--53667059	31	3.8	31	72	14	107	63	7	0	28	1.22
53666917--53666984	19	3.8	18	75	16	61	63	2	1	32	1.18
53667013--53667037	12	2.1	12	100	0	50	76	8	0	16	1.02
53669658--53669713	24	2.3	24	84	6	69	51	1	10	35	1.47
53670628--53670816	9	20.6	9	67	17	79	32	2	4	60	1.27
53670751--53670808	25	2.2	25	85	11	73	34	0	3	62	1.12
53672069--53672309	41	5.9	40	74	8	198	23	23	24	28	1.99
53672095--53672309	82	2.6	81	81	5	229	23	23	24	28	2.00
53672596--53672629	15	2.2	16	94	5	61	20	0	32	47	1.51
53672713--53672770	26	2.2	27	82	14	68	18	0	43	37	1.51
53673479--53673517	19	2.1	18	85	4	51	76	2	5	15	1.06
53673556--53673594	15	2.6	14	84	11	51	79	2	5	12	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53677672--53677705	12	2.8	12	86	0	50	47	14	8	29	1.75
53677751--53677805	16	3.6	16	76	14	71	45	25	1	27	1.64
53677767--53677818	13	3.8	13	73	14	50	46	21	3	28	1.69
53677749--53677822	29	2.6	29	97	0	139	45	22	2	28	1.66
53677866--53677956	31	3.0	31	74	9	107	46	13	2	38	1.55
53678102--53678212	9	13.2	9	74	16	96	47	17	2	32	1.61
53678102--53678212	25	4.4	25	85	4	152	47	17	2	32	1.61
53678075--53678188	50	2.3	51	81	4	133	51	15	3	28	1.60
53678106--53678188	16	5.1	16	76	11	80	48	16	3	31	1.64
53678102--53678212	50	2.2	50	91	0	177	47	17	2	32	1.61
53683724--53683895	66	2.6	65	80	4	184	38	17	28	15	1.90
53683882--53683977	21	4.6	21	82	2	104	34	15	43	6	1.72
53684280--53684489	44	4.8	43	80	4	233	23	15	29	31	1.95
53684280--53684497	87	2.5	87	81	3	260	22	15	29	31	1.95
53684280--53684489	43	4.8	44	80	6	232	23	15	29	31	1.95
53689030--53689061	16	1.9	17	93	6	57	53	18	9	18	1.71
53689294--53689335	21	2.0	21	86	9	59	47	4	45	2	1.36
53690220--53690259	6	6.7	6	83	11	55	52	0	0	47	1.00
53690220--53690266	12	3.9	13	81	13	57	53	0	0	46	1.00
53694431--53694615	41	4.5	41	73	7	108	26	30	19	23	1.98
53695201--53695272	37	1.9	38	86	8	103	50	6	26	16	1.71
53706920--53707164	41	6.0	41	73	3	190	24	35	19	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53717459--53717705	41	6.1	41	73	2	203	23	36	19	20	1.95
53717459--53717705	82	3.0	80	73	8	230	23	36	19	20	1.95
53720495--53720519	7	3.6	7	100	0	50	60	12	0	28	1.32
53729406--53729654	41	6.1	41	73	1	176	24	35	19	20	1.96
53729406--53729654	82	3.0	81	75	6	250	24	35	19	20	1.96
53729408--53729639	123	1.9	122	79	3	261	25	36	18	20	1.95
53740070--53740243	41	4.3	40	71	5	136	24	35	19	20	1.96
53749800--53750047	41	6.1	41	76	2	212	24	34	20	20	1.96
53749802--53750043	123	2.0	122	79	2	261	24	35	19	20	1.96
53752825--53752996	42	4.6	38	74	18	148	19	18	28	33	1.95
53752825--53752998	75	2.3	75	93	0	294	19	18	28	33	1.96
53752900--53753101	102	2.0	103	92	1	334	19	20	27	32	1.97
53760368--53760616	41	6.1	41	74	3	187	24	34	19	20	1.96
53760370--53760601	123	1.9	122	79	3	261	25	34	18	21	1.95
53763389--53763560	42	4.6	38	74	18	148	19	18	28	33	1.95
53763389--53763562	75	2.3	75	93	0	294	19	18	28	33	1.96
53763464--53763665	101	2.0	101	91	1	325	20	19	27	32	1.97
53763345--53763698	176	2.0	177	91	3	572	21	18	27	32	1.97
53772554--53772578	7	3.6	7	100	0	50	60	12	0	28	1.32
53781465--53781713	41	6.1	41	74	1	212	24	35	19	20	1.96
53781467--53781698	123	1.9	122	81	3	279	25	36	18	20	1.95
53784484--53784659	75	2.4	74	89	2	262	21	18	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53791944--53792092	82	1.8	80	86	2	217	25	33	18	22	1.96
53791936--53792108	41	4.3	41	70	2	143	24	35	18	21	1.96
53792080--53792137	24	2.4	24	91	0	89	24	39	17	18	1.92
53802489--53802664	41	4.3	41	72	2	156	24	36	18	20	1.95
53802634--53802691	24	2.4	24	91	0	89	24	39	17	18	1.92
53805232--53805271	17	2.3	18	79	12	57	55	0	0	45	0.99
53810654--53810691	19	2.0	19	100	0	76	26	26	21	26	1.99
53819633--53819682	17	2.9	17	96	3	91	10	46	32	12	1.74
53822450--53822481	15	2.1	15	100	0	64	6	6	12	75	1.19
53822432--53822486	20	2.8	20	88	0	74	7	10	12	69	1.37
53822673--53822726	15	3.8	14	80	9	56	35	37	9	18	1.83
53823799--53823881	3	27.7	3	100	0	166	32	0	0	67	0.91
53824033--53824063	16	1.9	16	93	0	53	35	0	0	64	0.94
53826307--53826333	8	3.4	8	100	0	54	25	0	0	74	0.83
53826674--53826712	21	1.9	20	94	5	69	38	0	0	61	0.96
53829577--53829669	20	4.7	20	68	2	71	37	13	8	39	1.76
53829635--53829677	20	2.2	20	87	4	61	44	6	6	41	1.58
53829741--53829788	20	2.4	20	80	13	55	35	6	8	50	1.58
53829758--53829830	20	3.6	21	78	10	64	36	10	8	43	1.70
53829977--53830071	20	4.8	20	68	17	54	33	9	14	42	1.78
53830116--53830258	20	7.1	20	72	7	92	38	11	9	40	1.74
53830116--53830259	40	3.6	39	82	5	135	38	11	9	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53830323--53830373	20	2.5	20	80	0	57	33	11	15	39	1.84
53832934--53832997	32	2.0	32	96	0	119	34	14	15	35	1.88
53838874--53838931	22	2.6	23	78	10	66	37	5	3	53	1.40
53839489--53839631	42	3.4	42	79	9	157	49	16	20	13	1.79
53843665--53843707	19	2.2	20	87	4	61	55	0	4	39	1.20
53843694--53843805	35	3.1	35	83	10	127	44	0	0	53	1.12
53843744--53843804	29	2.1	29	84	6	79	42	1	0	55	1.09
53843825--53843894	29	2.3	29	85	4	86	22	14	15	47	1.82
53844627--53844663	18	2.0	19	89	5	58	64	0	2	32	1.07
53844671--53844776	17	5.9	17	79	16	108	45	0	0	52	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199