genome.fa.s18.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  118  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39294160--39294274	46	2.5	46	94	0	194	30	24	20	24	1.99
39294488--39294526	18	2.2	17	86	13	53	46	20	0	33	1.51
39295590--39295623	17	1.9	17	88	5	50	14	11	0	73	1.10
39297599--39297629	13	2.4	13	100	0	62	61	6	0	32	1.21
39305068--39305103	13	2.8	13	82	0	54	80	0	0	19	0.71
39310683--39310721	20	2.0	20	94	0	69	33	17	12	35	1.88
39310855--39310950	29	3.2	29	75	10	86	47	19	4	28	1.68
39311042--39311136	3	32.3	3	72	8	52	65	1	31	2	1.11
39312084--39312126	21	2.0	21	86	0	59	23	13	27	34	1.93
39315245--39315318	35	2.1	35	89	0	112	48	22	5	22	1.71
39316511--39316576	23	2.9	23	80	8	82	27	1	3	68	1.13
39328006--39328039	9	3.8	9	84	0	50	52	0	2	44	1.16
39329335--39329505	85	2.0	85	98	0	333	38	15	21	25	1.92
39330653--39330702	26	1.9	26	91	0	82	20	0	24	56	1.43
39336186--39336243	22	2.8	20	71	21	55	44	0	6	48	1.29
39336194--39336243	22	2.3	21	83	13	66	44	0	8	48	1.32
39336357--39336389	15	2.1	16	88	5	50	51	9	0	39	1.34
39337826--39337882	27	2.1	27	90	3	89	38	22	22	15	1.92
39339622--39339682	29	2.1	29	90	0	95	16	27	36	19	1.93
39343001--39343051	23	2.2	23	89	0	75	27	7	21	43	1.80
39344729--39344822	43	2.2	43	90	0	143	29	26	21	22	1.99
39344750--39344847	43	2.3	43	92	1	162	29	31	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39346632--39346658	5	5.4	5	100	0	54	18	0	0	81	0.69
39347885--39347949	32	2.0	33	93	3	114	69	15	3	12	1.31
39349263--39349576	159	2.0	158	94	0	556	26	17	14	42	1.87
39350110--39350229	7	17.0	7	71	11	66	40	38	0	21	1.54
39350996--39351115	41	2.9	41	88	1	177	30	30	16	23	1.96
39353923--39353966	20	2.2	20	92	8	72	43	0	0	56	0.99
39353920--39353971	25	2.1	25	85	7	70	42	0	0	57	0.98
39353884--39354069	68	2.8	66	77	13	163	40	3	3	52	1.36
39353952--39354068	62	1.9	59	87	5	171	41	4	4	50	1.41
39363884--39364046	82	2.0	82	95	0	290	36	9	16	36	1.82
39366808--39366837	15	1.9	15	93	6	51	86	0	13	0	0.57
39367741--39367945	92	2.3	86	84	7	266	31	21	12	34	1.90
39367947--39368067	60	2.0	61	87	4	174	29	20	14	34	1.93
39368204--39368296	29	3.2	28	77	8	96	59	1	6	33	1.30
39368280--39368338	19	3.0	19	82	7	73	66	0	6	27	1.17
39368513--39368596	19	4.3	19	75	8	80	25	1	5	67	1.20
39368532--39368617	21	4.1	21	69	13	61	29	2	3	65	1.22
39368524--39368596	10	7.4	10	70	14	53	26	1	5	67	1.21
39369174--39369264	45	2.0	45	95	0	164	17	6	25	50	1.70
39369655--39369832	98	1.8	98	83	0	239	16	17	35	30	1.92
39371696--39371978	127	2.2	125	85	5	374	29	16	21	32	1.95
39374055--39374087	15	2.3	15	89	5	50	66	6	0	27	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39374179--39374228	20	2.7	18	80	14	57	66	0	0	34	0.92
39374187--39374244	30	2.0	30	86	10	84	60	1	0	37	1.07
39374281--39374380	52	1.9	52	87	0	146	37	0	30	33	1.58
39374333--39374401	22	3.1	22	91	0	111	40	0	27	31	1.57
39374825--39374870	19	2.3	20	82	14	60	39	0	2	58	1.10
39374804--39374866	31	2.0	31	87	6	92	34	1	3	60	1.22
39376686--39376756	29	2.4	29	85	0	97	26	30	19	22	1.98
39376686--39376766	29	2.8	29	79	7	92	27	30	19	22	1.98
39376767--39376836	28	2.6	27	77	11	79	21	14	32	31	1.93
39387644--39387795	43	3.5	42	87	4	205	30	26	15	27	1.96
39391883--39391908	12	2.2	12	100	0	52	30	26	7	34	1.85
39393627--39393740	9	12.1	9	76	15	106	35	0	19	44	1.51
39393621--39393730	30	3.8	30	77	13	140	38	0	18	43	1.50
39393631--39393742	56	2.0	57	96	1	208	35	0	19	44	1.51
39393732--39394330	120	5.0	120	93	0	991	45	2	9	42	1.49
39393899--39393945	21	2.3	21	88	3	69	48	0	8	42	1.33
39393995--39394065	23	3.3	20	82	7	70	47	2	8	40	1.48
39394260--39394306	21	2.3	21	88	3	69	48	0	8	42	1.33
39396765--39396821	30	1.9	30	92	7	98	50	29	0	19	1.47
39396782--39396863	7	11.4	7	75	10	67	50	32	0	17	1.46
39396812--39396872	21	2.9	21	82	2	77	50	32	0	16	1.45
39397105--39397350	115	2.1	115	83	3	309	31	22	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39397317--39397411	40	2.4	40	85	0	118	22	25	22	30	1.99
39397187--39397567	195	1.9	196	87	1	559	27	22	19	30	1.98
39397357--39397726	155	2.4	155	89	1	555	26	21	19	32	1.97
39397479--39397588	40	2.8	40	79	5	105	25	22	22	29	1.99
39397648--39397725	40	2.0	40	89	0	120	20	21	20	37	1.95
39405925--39405968	23	1.9	23	86	9	63	56	2	9	31	1.43
39408655--39408748	50	1.9	50	82	8	122	51	2	10	36	1.49
39410316--39410434	45	2.7	44	77	5	114	28	20	21	30	1.98
39410401--39410831	129	3.3	129	85	3	515	30	20	18	30	1.97
39410536--39410874	44	7.8	43	74	7	240	30	21	18	29	1.97
39410630--39410874	85	2.8	88	79	4	273	31	22	18	27	1.97
39411040--39411527	45	11.0	45	76	5	454	24	24	22	28	1.99
39411035--39411527	89	5.5	89	81	1	603	23	23	23	29	1.99
39411037--39411527	177	2.8	177	85	3	621	24	24	23	28	1.99
39412619--39412688	7	9.7	7	79	11	70	0	18	0	81	0.69
39412618--39412709	20	4.9	19	82	14	102	2	17	0	80	0.81
39412621--39412692	24	3.2	23	81	16	89	0	19	0	80	0.71
39412618--39412689	26	2.8	25	82	15	94	0	19	0	80	0.71
39412614--39412709	27	3.3	29	76	15	92	2	18	0	79	0.84
39412632--39412700	9	7.4	9	78	14	61	1	18	0	79	0.80
39412619--39412692	9	7.8	9	75	19	62	0	18	0	81	0.70
39412625--39412707	18	4.6	17	73	16	69	2	16	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39418535--39418586	25	2.1	25	92	0	86	42	13	0	44	1.44
39418549--39418586	12	3.0	13	76	7	51	39	13	0	47	1.42
39418857--39418888	16	1.9	17	93	6	57	6	6	0	87	0.67
39419689--39419752	33	2.0	32	84	3	83	12	12	10	64	1.51
39421784--39421816	14	2.4	14	90	5	50	21	0	0	78	0.75
39421824--39421888	26	2.4	28	84	7	80	38	0	0	61	0.96
39432054--39432095	18	2.5	18	81	11	54	33	0	4	61	1.17
39432196--39432245	15	3.2	15	77	8	55	62	2	0	36	1.07
39432196--39432245	16	3.2	16	75	13	50	62	2	0	36	1.07
39432187--39432238	22	2.4	21	81	15	61	65	1	0	32	1.04
39435703--39435785	29	2.8	29	82	13	91	55	1	2	40	1.21
39435733--39435792	18	3.3	18	77	11	59	55	1	1	41	1.20
39435893--39435991	9	10.4	9	71	20	60	63	2	3	31	1.21
39435893--39435991	28	3.5	27	78	13	83	63	2	3	31	1.21
39435893--39435992	10	10.4	10	68	12	50	64	2	3	31	1.20
39435958--39436006	20	2.4	20	82	3	53	61	0	6	32	1.21
39442209--39442301	44	2.1	44	86	9	127	35	25	4	34	1.76
39442290--39442322	16	2.1	16	100	0	66	24	33	6	36	1.80
39445540--39445571	13	2.4	14	85	15	50	62	12	0	25	1.30
39445550--39445656	39	2.8	39	94	1	180	47	12	9	30	1.72
39448777--39448839	31	2.0	31	84	12	83	4	19	0	76	0.96
39451022--39451053	13	2.4	14	85	15	50	62	12	0	25	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39451032--39451146	39	3.0	38	85	3	142	47	13	6	32	1.68
39455965--39456034	33	2.1	34	92	5	117	40	15	7	37	1.75
39457808--39457846	18	2.2	18	90	9	62	5	20	2	71	1.17
39461049--39461145	32	3.1	32	76	13	103	22	7	9	60	1.51
39461070--39461176	28	3.4	32	81	11	107	23	9	8	58	1.56
39461070--39461176	33	3.4	33	80	11	100	23	9	8	58	1.56
39461070--39461247	96	1.9	94	82	8	227	24	9	10	55	1.63
39463193--39463282	40	2.3	40	96	1	164	57	7	6	27	1.52
39470283--39470341	29	2.0	29	100	0	118	30	20	16	32	1.95
39476097--39476153	30	1.9	30	96	0	105	35	21	26	17	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199