genome.fa.s18.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  22  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8988089--8988185	33	2.8	33	84	7	106	37	22	10	29	1.87
8988399--8988554	41	3.8	41	89	6	235	28	22	20	28	1.98
8989039--8989086	24	2.1	23	85	11	64	31	14	0	54	1.41
8990664--8990897	116	2.0	116	94	0	405	32	21	10	35	1.87
8993123--8993171	22	2.2	22	78	7	55	36	0	2	61	1.08
9000907--9000978	36	2.0	36	94	0	126	25	0	45	29	1.53
9004462--9004517	29	1.9	29	88	0	85	28	10	17	42	1.83
9005408--9005461	29	1.9	28	85	7	74	38	16	14	29	1.89
9007126--9007156	16	1.9	16	93	0	53	35	3	19	41	1.67
9013466--9013494	5	6.0	5	92	8	51	37	0	20	41	1.53
9025176--9025225	20	2.5	20	80	3	57	54	4	0	42	1.19
9025982--9026041	30	1.9	32	86	10	88	51	13	0	35	1.41
9027983--9028040	20	2.8	20	80	17	57	53	3	1	41	1.28
9028022--9028129	11	10.4	11	72	19	72	61	0	0	37	1.03
9028014--9028149	9	13.6	10	72	15	77	62	0	0	36	1.01
9028008--9028077	29	2.3	30	85	4	88	60	0	1	38	1.06
9028001--9028079	30	2.6	32	80	11	103	60	0	1	37	1.05
9028020--9028148	41	3.2	41	95	2	226	61	0	0	37	1.02
9028434--9028546	24	5.2	23	69	20	64	52	2	0	44	1.21
9031419--9031491	25	3.0	25	90	4	105	52	4	0	43	1.20
9045847--9045969	60	2.0	60	100	0	246	29	27	24	18	1.98
9046152--9046180	4	7.2	4	100	0	58	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9056341--9056396	24	2.4	24	82	8	71	19	19	8	51	1.73
9064083--9064121	11	3.7	10	86	10	51	10	5	2	82	0.93
9070727--9070822	31	3.1	31	95	3	174	31	9	13	45	1.75
9071396--9071449	9	5.8	9	76	8	54	70	14	14	0	1.17
9071414--9071447	17	2.0	17	100	0	68	64	17	17	0	1.29
9074481--9074576	31	3.1	31	90	3	156	31	9	13	45	1.75
9076314--9076339	3	8.7	3	100	0	52	0	30	0	69	0.89
9085725--9085768	16	2.5	19	75	17	51	59	2	2	36	1.23
9090515--9090595	27	3.2	27	61	16	64	44	8	8	38	1.66
9090501--9090597	49	2.0	49	97	0	185	42	7	8	42	1.62
9091895--9091956	5	13.0	5	83	16	87	38	0	0	61	0.96
9091895--9091961	8	7.9	8	81	15	57	38	0	0	61	0.96
9091974--9092069	40	2.3	40	89	3	147	63	8	28	0	1.23
9092277--9092308	13	2.5	13	94	0	55	31	0	12	56	1.37
9092403--9092644	50	4.7	50	86	4	297	26	24	29	19	1.99
9092403--9092652	100	2.4	103	88	6	364	26	24	29	20	1.99
9093974--9094019	16	2.9	16	81	12	51	60	2	0	36	1.09
9093974--9094006	17	2.0	17	88	5	50	60	0	0	39	0.97
9096253--9096287	17	2.1	16	89	5	52	54	0	0	45	0.99
9098732--9098889	46	3.4	46	93	1	255	29	27	6	36	1.81
9099544--9099577	12	2.8	12	100	0	68	55	0	0	44	0.99
9100275--9100337	26	2.4	27	79	10	78	14	23	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9102526--9102566	22	1.9	21	85	5	55	63	0	7	29	1.21
9102516--9102577	21	3.0	21	75	9	56	66	0	4	29	1.12
9110009--9111274	366	3.5	366	90	1	1944	36	16	15	31	1.91
9112310--9112588	71	4.0	71	88	2	397	26	19	9	44	1.81
9116167--9116191	12	2.1	12	100	0	50	84	0	16	0	0.63
9116880--9117962	365	3.0	364	87	3	1557	36	17	14	31	1.90
9119163--9120246	365	3.0	365	89	2	1586	36	17	15	30	1.91
9120749--9120773	12	2.1	12	100	0	50	84	0	16	0	0.63
9121462--9122557	365	3.0	365	89	2	1680	36	16	15	31	1.90
9128001--9128036	18	2.0	18	94	0	63	36	11	22	30	1.89
9128002--9128043	18	2.3	18	87	0	57	38	14	16	30	1.89
9128888--9129007	47	2.6	47	86	1	170	53	11	10	25	1.68
9128810--9129241	115	3.7	116	84	5	505	51	12	9	26	1.70
9128982--9129024	21	2.0	21	90	0	68	51	13	9	25	1.71
9128935--9129071	68	2.0	68	91	0	220	50	12	10	27	1.72
9129003--9129100	47	2.1	47	92	0	160	52	11	11	25	1.70
9129123--9129317	50	4.0	49	79	10	186	50	9	11	28	1.70
9129152--9129307	50	3.0	53	85	3	212	50	7	13	28	1.69
9129829--9129897	9	7.4	9	72	15	52	33	1	1	63	1.12
9129832--9129876	20	2.2	21	84	7	58	28	2	2	66	1.15
9129924--9129966	17	2.5	17	80	3	50	30	2	2	65	1.18
9140964--9141229	131	2.0	131	99	0	523	33	13	15	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9142175--9142220	23	2.0	23	100	0	92	56	17	8	17	1.65
9157906--9157975	34	2.1	34	97	0	131	38	0	20	41	1.52
9157915--9157995	34	2.6	30	83	13	94	44	0	14	40	1.46
9168678--9168703	13	2.0	13	100	0	52	38	7	0	53	1.30
9179910--9179959	17	2.7	20	78	18	70	10	0	44	46	1.37
9184549--9184598	17	2.7	20	78	18	70	10	0	44	46	1.37
9197568--9197612	14	2.9	15	84	12	56	53	0	0	46	1.00
9359241--9359274	16	2.1	16	88	5	50	55	8	8	26	1.59
9361743--9361834	45	2.1	44	89	2	139	67	1	16	15	1.29
9362130--9362190	28	2.2	27	88	8	88	26	4	1	67	1.20
9363058--9363091	17	2.1	15	89	10	50	73	5	0	20	1.04
9369239--9369391	79	1.9	80	86	1	218	25	17	14	42	1.87
9373370--9373402	15	2.3	15	89	5	50	54	3	0	42	1.15
9373583--9373624	22	1.9	22	85	0	57	52	7	2	38	1.42
9375004--9375309	126	2.4	125	87	1	434	31	17	21	29	1.97
9384888--9384961	4	18.5	4	100	0	148	25	0	24	50	1.50
9388648--9388691	20	2.1	21	84	12	56	54	4	2	38	1.33
9389253--9389291	3	13.0	3	100	0	78	33	0	0	66	0.92
9400296--9400373	32	2.5	31	82	12	90	55	5	11	28	1.57
9400296--9400378	29	2.8	29	80	12	82	56	4	12	26	1.55
9406502--9406547	23	2.0	23	86	0	65	54	2	2	41	1.25
9406888--9406944	30	2.0	27	83	10	69	38	3	21	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9412081--9412137	22	2.6	22	97	0	105	31	3	21	43	1.69
9413093--9413155	32	2.0	32	90	0	99	23	6	25	44	1.77
9413065--9413257	96	2.0	97	96	1	361	24	10	21	43	1.84
9419117--9419148	5	6.4	5	100	0	64	62	0	0	37	0.95
9421606--9421643	6	6.3	6	82	11	51	84	2	10	2	0.83
9421601--9421645	21	2.2	21	84	4	56	84	2	11	2	0.80
9425094--9425150	22	2.6	22	88	0	87	31	3	24	40	1.72
9426087--9426149	32	2.0	32	90	0	99	23	6	25	44	1.77
9426062--9426251	96	2.0	97	95	1	346	25	9	21	43	1.82
9445263--9445302	11	3.9	11	84	15	59	55	0	0	45	0.99
9445308--9445349	21	2.0	22	90	4	68	64	0	4	30	1.14
9445951--9445985	16	2.1	16	89	5	52	62	0	0	37	0.95
9452076--9452786	84	8.5	84	86	4	879	17	32	10	40	1.82
9454616--9454653	19	2.1	18	85	14	51	55	2	0	42	1.14
9455172--9455215	20	2.1	21	87	4	63	59	0	0	40	0.98
9462081--9462173	23	4.3	22	71	14	68	17	0	24	58	1.39
9462090--9462227	14	9.7	14	70	13	59	17	0	26	56	1.41
9462120--9462204	13	6.2	13	75	15	73	18	0	24	56	1.42
9462120--9462222	35	3.0	34	81	7	102	18	0	25	56	1.42
9462089--9462206	28	4.2	28	72	15	82	18	0	24	56	1.41
9462187--9462280	22	4.2	22	70	20	61	12	0	26	60	1.32
9462279--9462309	14	2.3	14	94	5	55	12	0	22	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9462255--9462315	29	2.1	29	84	6	79	14	0	21	63	1.30
9462277--9462316	14	2.8	14	80	3	53	15	0	17	67	1.23
9462293--9462335	20	2.2	20	91	0	68	16	0	20	62	1.32
9462380--9462426	21	2.2	22	84	3	60	14	2	21	61	1.43
9462467--9462551	22	3.9	22	83	9	95	17	1	18	62	1.40
9462503--9462581	15	5.4	15	75	4	54	20	1	22	55	1.50
9462560--9462717	46	3.7	43	73	20	134	18	1	23	56	1.51
9462611--9462678	8	8.8	8	82	12	72	22	0	25	52	1.47
9462562--9462737	83	2.1	82	86	4	246	18	1	23	55	1.52
9462744--9462863	14	8.3	14	66	13	55	15	2	23	58	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199