genome.fa.s18.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  42  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16722128--16722174	24	2.0	24	86	0	67	42	4	4	48	1.42
16724308--16724446	46	3.0	45	82	2	161	29	23	9	37	1.86
16730973--16731046	33	2.3	33	79	9	82	63	14	9	12	1.52
16736061--16736108	15	2.9	18	79	17	59	47	0	0	52	1.00
16736074--16736114	15	2.7	15	82	17	50	48	0	2	48	1.14
16736327--16736365	16	2.4	16	91	0	60	30	30	2	35	1.71
16736340--16736396	16	3.6	16	92	0	78	35	35	0	29	1.58
16744460--16744487	10	2.8	10	100	0	56	21	39	17	21	1.93
16753427--16753460	18	1.9	18	88	5	52	29	0	5	64	1.17
16758675--16759011	46	7.6	46	87	7	473	28	21	16	34	1.94
16758903--16758975	36	2.0	36	94	0	128	26	19	16	38	1.92
16758857--16759011	82	1.9	82	97	0	292	28	21	14	36	1.92
16771224--16771364	41	3.4	41	94	0	237	31	15	23	29	1.95
16777639--16777669	15	2.1	15	100	0	62	29	38	6	25	1.81
16786026--16786065	18	2.3	17	86	4	53	40	0	2	57	1.12
16790333--16790372	13	3.0	13	82	17	55	25	0	2	72	0.97
16792239--16792271	17	1.9	17	93	0	57	24	0	3	72	0.98
16793754--16793816	27	2.3	27	97	0	117	26	23	33	15	1.95
16793943--16793982	14	2.9	13	85	10	53	65	0	35	0	0.93
16794057--16794082	12	2.2	12	100	0	52	38	0	15	46	1.46
16794150--16794438	19	15.2	19	66	24	105	32	1	13	52	1.48
16794152--16794218	22	3.2	22	81	10	86	29	1	10	58	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16794263--16794443	50	3.7	49	82	6	217	33	1	13	52	1.47
16794263--16794456	96	2.0	97	83	6	241	33	1	12	52	1.47
16794431--16794552	60	2.0	60	87	3	174	31	0	13	54	1.46
16794586--16794668	38	2.2	38	95	2	148	54	0	3	42	1.18
16794710--16794746	16	2.4	15	90	4	56	35	2	2	59	1.26
16795090--16795170	37	2.2	38	97	2	155	40	3	2	53	1.32
16795133--16795187	23	2.3	25	76	17	62	40	7	1	50	1.40
16795204--16795325	60	2.0	60	87	3	174	54	13	0	31	1.46
16795339--16795429	8	10.4	8	71	17	65	48	16	1	34	1.54
16795386--16795654	19	14.5	19	68	21	126	55	12	0	31	1.42
16795365--16795541	27	7.1	27	79	16	188	53	12	0	32	1.43
16795469--16795652	41	4.5	41	72	22	154	57	11	0	29	1.39
16795485--16795671	101	1.9	101	93	2	322	57	12	0	29	1.39
16795586--16795652	22	3.2	22	83	8	86	61	8	1	28	1.35
16795721--16795746	12	2.2	12	100	0	52	46	15	0	38	1.46
16813137--16813284	57	2.5	59	82	9	167	31	21	24	22	1.99
16814362--16814395	17	2.1	17	88	5	52	50	0	17	32	1.47
16815265--16815364	42	2.4	42	91	0	164	36	9	28	27	1.87
16838739--16838765	2	13.5	2	100	0	54	0	51	0	48	1.00
16843145--16843265	64	1.9	64	84	0	161	20	20	24	33	1.97
16844513--16844583	29	2.4	29	97	0	133	19	32	29	18	1.96
16850265--16850295	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16850348--16850384	18	2.1	18	94	0	65	45	8	10	35	1.69
16850598--16850657	30	2.0	31	86	3	86	20	40	0	40	1.52
16851306--16851331	5	5.2	5	100	0	52	23	19	19	38	1.93
16854847--16854887	21	2.0	21	90	0	64	19	29	21	29	1.98
16863278--16863317	22	1.9	21	85	10	55	27	10	5	57	1.52
16867737--16867867	64	2.0	64	98	0	253	32	14	18	35	1.91
16871616--16871709	45	2.1	45	93	0	161	47	14	9	27	1.75
16881704--16881735	13	2.5	13	94	0	55	31	0	12	56	1.37
16881830--16882071	50	4.7	50	85	4	288	26	23	29	19	1.99
16881830--16882079	100	2.4	103	87	6	355	26	23	29	20	1.99
16886597--16886786	95	2.0	95	98	0	371	41	9	18	30	1.82
16887297--16887597	46	6.3	48	88	7	366	35	14	21	28	1.92
16887231--16887586	98	3.6	98	87	7	499	35	14	21	28	1.93
16887515--16887708	74	2.5	83	84	11	257	37	15	20	26	1.92
16887561--16887706	37	4.0	37	93	1	242	37	15	21	25	1.93
16889293--16889360	13	5.2	13	71	7	57	33	19	1	45	1.59
16889295--16889348	27	2.0	27	85	0	72	33	20	1	44	1.62
16889252--16889360	53	2.1	53	84	6	141	34	17	2	44	1.63
16893474--16893505	8	4.0	8	95	0	55	40	25	0	34	1.56
16905105--16905150	21	2.2	21	100	0	92	30	0	0	69	0.89
16909428--16909464	16	2.5	15	87	12	51	56	0	5	37	1.22
16916201--16916306	34	3.2	33	77	10	126	52	0	2	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16922154--16922245	46	2.0	46	100	0	184	8	23	13	54	1.66
16935751--16935813	29	2.2	29	100	0	126	25	30	12	31	1.93
16938916--16938963	21	2.3	21	79	13	55	33	2	2	62	1.18
16939853--16939882	16	1.9	15	93	6	51	53	6	3	36	1.44
16947956--16948010	24	2.3	24	84	6	67	7	38	3	50	1.48
16947973--16948010	12	3.2	12	88	0	58	5	36	0	57	1.21
16953083--16953114	3	11.0	3	93	6	57	68	0	31	0	0.90
16958571--16958598	13	2.2	13	100	0	56	50	0	0	50	1.00
16969608--16969668	25	2.5	25	78	10	72	68	4	8	18	1.33
16969657--16969687	16	1.9	16	93	0	53	80	6	9	3	0.99
16973513--16973642	69	1.9	69	98	0	251	39	15	17	27	1.90
16977500--16977524	6	4.2	6	100	0	50	16	68	0	16	1.22
16978858--16978887	15	2.0	15	93	0	51	56	0	0	43	0.99
16982670--16982849	38	4.6	37	70	17	132	43	1	3	51	1.27
16982740--16982898	26	6.5	26	63	23	76	44	0	3	52	1.21
16982652--16983012	120	3.0	120	92	1	589	44	1	4	50	1.28
16982969--16983010	15	2.7	16	82	14	52	45	0	2	52	1.13
16982953--16983001	15	3.3	15	80	13	57	48	2	0	48	1.12
16983227--16983278	16	3.2	16	94	0	95	36	36	0	26	1.57
16986652--16986726	30	2.5	30	93	0	123	45	6	21	26	1.76
16986656--16986726	15	4.7	15	66	13	56	43	7	21	28	1.78
16991305--16991412	15	7.2	15	67	12	78	44	7	22	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16991299--16991422	30	4.1	30	93	1	203	43	6	24	25	1.78
17004975--17005038	15	4.3	15	74	7	58	42	6	1	50	1.37
17012666--17012700	17	2.1	17	89	10	54	71	0	20	8	1.11
17035648--17035676	3	9.7	3	100	0	58	0	34	0	65	0.93
17040457--17040631	81	2.1	81	94	2	305	36	9	22	30	1.87
17044816--17044856	7	5.6	7	83	11	55	41	2	0	56	1.13
17044816--17044854	16	2.6	15	88	8	53	41	2	0	56	1.13
17045221--17045288	21	3.3	21	68	15	61	32	8	20	38	1.84
17045181--17045288	40	2.7	40	82	5	119	32	9	19	38	1.83
17045491--17045587	45	2.2	45	90	0	149	22	17	18	41	1.90
17048226--17048288	33	1.9	31	84	9	81	30	1	1	66	1.10
17066554--17066590	6	6.2	6	96	0	65	2	16	48	32	1.60
17071901--17071937	18	2.1	18	89	0	56	48	2	2	45	1.30
17077435--17077632	48	4.1	48	84	0	243	21	29	21	27	1.99
17079962--17080210	50	4.8	50	87	3	318	20	30	22	25	1.98
17080305--17080336	13	2.5	13	94	0	55	56	12	0	31	1.37
17084386--17084942	185	3.0	185	99	0	1105	45	9	20	24	1.80
17113845--17113885	18	2.4	18	84	8	59	41	14	0	43	1.45
17118255--17118306	23	2.3	23	86	0	68	30	19	17	32	1.95
17139364--17139470	31	3.5	30	78	12	112	23	19	18	38	1.93
17139414--17139480	29	2.2	31	82	10	77	23	13	22	40	1.89
17142265--17142291	13	2.1	13	100	0	54	48	14	14	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17152327--17152370	17	2.6	18	82	10	56	65	0	0	34	0.93
17153400--17153484	34	2.5	33	79	5	91	43	9	8	38	1.67
17156413--17156439	12	2.2	12	100	0	54	14	18	7	59	1.58
17157592--17157642	15	3.4	14	82	15	57	52	1	29	15	1.54
17165266--17165307	20	2.2	20	86	4	59	64	9	4	21	1.42
17170894--17170921	9	3.1	9	100	0	56	32	0	0	67	0.91
17175444--17175478	15	2.2	16	90	5	54	60	0	14	25	1.35
17186672--17186722	21	2.5	20	81	6	59	52	31	0	15	1.43
17186680--17186722	20	2.2	20	87	8	61	55	25	0	18	1.42
17191456--17191508	18	3.2	18	65	29	53	18	7	43	30	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199