genome.fa.s18.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  123  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41215346--41215529	40	4.6	40	83	9	216	24	22	27	25	2.00
41215398--41215562	79	2.1	79	84	6	210	26	21	27	25	1.99
41223219--41223401	40	4.6	39	85	6	219	24	21	27	25	1.99
41223219--41223401	78	2.3	80	83	8	223	24	21	27	25	1.99
41232358--41232386	13	2.1	14	93	6	51	27	0	13	58	1.36
41242658--41242713	20	2.8	20	74	15	53	21	26	17	33	1.96
41242666--41242713	10	4.8	10	76	0	51	20	25	18	35	1.95
41242894--41242939	22	2.2	22	88	7	69	19	13	13	54	1.71
41253506--41253578	37	2.0	37	81	7	87	54	23	6	15	1.64
41260062--41260211	27	5.6	26	80	3	113	28	29	17	24	1.97
41260082--41260210	27	4.7	27	82	1	150	28	28	17	24	1.98
41260085--41260210	55	2.3	54	87	1	171	28	28	18	24	1.98
41265200--41265265	33	2.0	33	100	0	132	51	12	9	27	1.69
41267904--41268029	63	2.0	63	100	0	252	25	17	17	39	1.91
41271606--41271638	14	2.2	16	89	10	52	66	3	0	30	1.06
41276008--41276049	20	2.1	20	86	8	59	54	2	16	26	1.54
41279050--41279102	20	2.5	22	81	6	65	35	11	13	39	1.80
41281693--41281747	29	1.9	28	85	3	74	10	14	1	72	1.19
41290693--41290725	15	2.1	16	88	5	50	75	15	0	9	1.03
41303421--41303456	18	2.0	18	100	0	72	38	5	16	38	1.72
41305762--41305820	29	2.0	31	83	6	77	35	6	15	42	1.73
41309525--41309558	12	2.8	12	81	0	50	44	23	23	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41311863--41311921	7	8.7	7	76	12	61	83	0	15	1	0.74
41311862--41311921	8	7.6	8	77	20	56	83	0	15	1	0.73
41311872--41311922	6	8.0	6	77	18	50	80	0	17	1	0.81
41311862--41311921	13	4.4	14	77	8	61	83	0	15	1	0.73
41311865--41311921	20	2.9	20	79	12	73	82	0	15	1	0.75
41312248--41312446	108	1.9	106	82	6	249	24	19	10	46	1.80
41313423--41313530	46	2.3	46	95	3	191	25	14	26	33	1.95
41315735--41315794	28	2.1	29	84	9	79	35	0	3	61	1.12
41317489--41317549	31	1.9	32	83	3	79	26	21	39	13	1.90
41319636--41319704	28	2.6	26	73	8	75	26	10	10	53	1.66
41325154--41325262	34	3.0	35	78	13	130	27	25	21	25	1.99
41325119--41325338	114	1.9	115	81	9	272	26	25	22	25	2.00
41325119--41325338	40	5.7	39	78	11	204	26	25	22	25	2.00
41329016--41329055	17	2.4	17	95	0	71	37	12	20	30	1.89
41333261--41333485	79	2.8	79	83	7	267	26	26	22	24	2.00
41333261--41333485	119	1.9	120	82	8	289	26	26	22	24	2.00
41333261--41333485	40	5.7	39	81	8	226	26	26	22	24	2.00
41339852--41339950	46	2.2	46	92	0	162	36	6	7	50	1.54
41354614--41354647	13	2.5	13	85	4	50	26	5	2	64	1.30
41358448--41358591	51	3.0	51	79	7	151	29	30	7	32	1.85
41362149--41362234	41	2.1	41	88	0	127	31	17	12	38	1.87
41363596--41363640	13	3.5	13	87	6	65	77	4	2	15	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41366230--41366315	41	2.1	41	93	0	145	29	16	17	37	1.91
41369458--41369497	21	1.9	21	84	0	53	52	0	0	47	1.00
41369835--41369873	15	2.6	14	84	8	51	58	5	0	35	1.20
41373856--41374058	25	8.1	25	68	13	78	34	18	27	19	1.95
41373975--41374058	26	3.3	26	81	5	100	36	20	25	17	1.94
41379317--41379379	22	2.9	22	83	4	65	19	23	15	41	1.90
41379325--41379380	22	2.5	23	82	8	71	16	25	16	42	1.87
41383334--41383365	10	3.2	10	90	0	55	0	15	0	84	0.63
41388588--41388653	13	5.1	13	79	0	78	30	9	24	36	1.86
41389494--41389735	50	4.7	50	90	3	349	26	22	30	21	1.99
41394044--41394187	51	2.8	51	70	0	126	29	18	25	26	1.98
41394308--41394737	138	3.2	137	75	12	446	29	18	25	26	1.98
41394538--41394581	21	2.1	21	86	0	61	38	2	34	25	1.68
41393964--41394730	258	3.0	257	86	3	1031	29	17	25	26	1.98
41394568--41394706	51	2.7	51	79	0	170	29	20	24	25	1.99
41394231--41394683	123	3.6	123	76	11	455	29	17	26	26	1.97
41396512--41396551	16	2.4	17	87	4	55	15	7	2	75	1.14
41399926--41399993	34	2.0	34	100	0	136	17	20	17	44	1.87
41402988--41403055	29	2.3	29	85	5	93	27	30	13	27	1.94
41403159--41403237	29	2.7	30	82	13	110	29	30	15	25	1.96
41402878--41403231	176	2.0	173	87	2	512	31	24	14	29	1.94
41411783--41411859	22	3.2	23	63	22	59	27	10	11	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41413299--41413328	15	2.0	15	100	0	60	13	26	6	53	1.64
41414802--41414835	2	17.0	2	100	0	68	50	0	50	0	1.00
41415106--41415148	19	2.3	18	80	7	50	41	16	0	41	1.48
41415467--41415493	13	2.1	13	100	0	54	14	22	29	33	1.94
41417565--41417623	31	2.0	29	86	6	82	64	3	3	28	1.26
41419587--41419630	19	2.4	19	84	3	54	52	2	6	38	1.41
41421805--41422281	133	3.5	135	77	9	360	28	13	15	41	1.86
41424308--41424342	18	2.0	17	88	5	52	28	17	5	48	1.69
41426161--41426228	34	2.0	34	83	8	86	36	2	2	57	1.29
41427027--41427080	16	3.3	16	76	5	63	46	0	0	53	1.00
41428318--41428346	9	3.2	9	100	0	58	68	0	0	31	0.89
41439218--41439262	21	2.1	21	84	8	56	44	11	20	24	1.83
41443256--41443323	26	2.6	26	92	2	109	58	0	36	4	1.18
41443309--41443354	19	2.3	20	82	14	60	67	0	28	4	1.10
41443888--41443922	17	2.1	17	88	0	52	28	17	25	28	1.97
41447252--41447323	20	3.5	20	83	9	83	33	23	31	11	1.90
41447275--41447339	20	3.2	20	87	8	80	30	21	35	12	1.90
41450273--41450391	50	2.4	50	81	0	139	24	28	21	26	1.99
41455299--41455334	18	1.9	18	88	5	54	58	2	0	38	1.13
41455309--41455374	30	2.2	29	82	15	80	56	0	0	43	0.99
41456873--41457001	49	2.7	49	91	1	206	24	23	20	31	1.98
41456972--41457101	50	2.6	50	80	0	152	23	28	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41457956--41458003	19	2.6	19	78	18	57	60	0	2	37	1.09
41458504--41458540	18	2.1	18	89	0	56	32	5	10	51	1.60
41458592--41458622	9	3.4	9	90	0	53	38	22	12	25	1.90
41478943--41479029	24	3.5	24	81	7	86	40	19	22	17	1.91
41482656--41482716	25	2.5	24	89	7	95	27	22	14	34	1.94
41482656--41482731	25	3.1	24	85	9	73	30	22	15	31	1.95
41484573--41484615	21	2.0	21	100	0	86	34	13	27	23	1.93
41486657--41486747	22	4.2	22	81	1	85	35	3	20	40	1.69
41486688--41486768	22	3.8	21	80	6	65	37	6	18	38	1.76
41486663--41486768	43	2.4	44	79	1	124	33	5	18	41	1.74
41494304--41494567	136	1.9	137	85	3	363	43	5	9	40	1.60
41494527--41494580	20	2.7	20	75	13	58	38	0	14	46	1.45
41500346--41500373	5	5.6	5	100	0	56	39	0	0	60	0.97
41512845--41512872	13	2.2	13	100	0	56	53	21	0	25	1.46
41513598--41513683	41	2.1	41	93	2	147	36	22	15	26	1.93
41513834--41513892	23	2.4	25	78	16	70	42	15	0	42	1.46
41514616--41514675	29	2.1	28	81	9	68	43	5	0	51	1.23
41524893--41524977	21	4.1	21	86	3	91	17	14	5	62	1.51
41525204--41525293	19	4.6	19	72	15	76	16	14	8	60	1.59
41525197--41525294	40	2.5	39	77	8	108	16	16	9	58	1.62
41525756--41525784	13	2.2	13	100	0	58	24	24	6	44	1.77
41535716--41535869	80	1.9	80	88	1	229	38	7	14	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41548696--41548732	8	4.6	8	93	0	65	51	0	21	27	1.48
41552846--41552968	40	3.1	40	87	3	178	36	20	20	22	1.95
41553016--41553095	41	2.0	41	92	0	133	18	23	31	26	1.98
41553518--41553546	14	2.0	15	93	6	51	27	0	37	34	1.57
41554244--41554369	11	11.5	12	71	22	59	61	0	3	35	1.12
41554229--41554380	22	7.3	21	67	18	95	62	0	2	34	1.09
41554223--41554378	43	3.7	41	87	9	201	60	0	2	36	1.10
41554282--41554347	10	6.3	10	76	10	51	68	0	1	30	0.99
41554223--41554326	52	2.0	53	94	1	183	58	0	1	39	1.09
41554307--41554345	19	2.1	19	85	0	51	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199