genome.fa.s18.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  105  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35233387--35233470	19	4.5	19	93	3	152	0	13	4	82	0.83
35235168--35235243	22	3.6	21	73	10	75	46	1	1	51	1.17
35235190--35235249	16	4.2	16	66	27	53	46	1	0	51	1.10
35235190--35235292	38	2.6	38	82	13	118	47	2	0	48	1.23
35235182--35235294	41	2.8	39	82	12	124	48	2	1	46	1.26
35235190--35235325	41	3.5	38	77	15	118	52	2	0	44	1.18
35238093--35238147	26	2.1	27	80	16	71	30	0	16	52	1.44
35239043--35239128	26	3.4	25	80	15	90	23	24	20	31	1.98
35239290--35239328	20	2.0	20	84	0	51	35	5	17	41	1.72
35245441--35245553	22	5.0	22	79	6	118	16	26	18	38	1.92
35245428--35245529	47	2.2	47	94	3	179	15	26	21	36	1.93
35245428--35245529	22	4.3	24	80	13	115	15	26	21	36	1.93
35246572--35246890	159	2.0	161	88	1	480	50	14	15	19	1.78
35250022--35250048	11	2.5	11	100	0	54	18	0	14	66	1.25
35250301--35250328	13	2.2	13	100	0	56	50	21	0	28	1.49
35250228--35250431	83	2.5	82	91	1	318	50	15	6	28	1.68
35250509--35250962	157	2.9	155	81	8	526	32	13	16	37	1.88
35253203--35253317	45	2.4	49	82	15	166	27	53	0	19	1.46
35253236--35253312	24	3.3	24	67	10	79	31	49	0	19	1.49
35253223--35253317	45	2.1	45	96	0	172	27	52	0	20	1.46
35255739--35255775	9	4.0	9	89	3	56	21	2	8	67	1.29
35258822--35259003	48	3.8	48	94	1	330	48	6	8	36	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35258822--35258999	95	1.9	96	98	1	349	47	6	8	37	1.60
35262224--35262430	92	2.3	91	85	5	265	45	3	4	46	1.41
35262358--35262405	26	1.9	25	84	16	64	45	0	2	52	1.12
35262520--35262708	61	3.1	61	70	17	203	42	1	6	49	1.37
35262573--35262624	15	3.6	15	80	12	56	44	0	1	53	1.11
35262446--35262745	120	2.5	121	92	5	491	43	2	4	49	1.36
35262702--35262743	15	2.7	16	82	14	52	45	0	2	52	1.13
35262693--35262734	15	2.9	15	82	10	52	47	0	0	52	1.00
35262677--35262989	153	2.0	156	91	2	515	46	5	4	43	1.46
35263112--35263147	16	2.2	16	100	0	72	38	36	0	25	1.56
35270222--35270286	10	6.4	10	76	3	67	33	1	0	64	1.03
35270220--35270286	31	2.2	31	91	0	107	34	1	0	64	1.03
35270222--35270280	21	2.9	21	84	2	66	35	1	0	62	1.05
35272614--35273251	29	22.3	29	87	2	882	42	24	0	31	1.60
35272601--35273248	115	5.7	116	88	3	886	42	23	0	32	1.60
35276447--35276726	124	2.3	124	94	2	483	32	21	16	30	1.95
35279360--35279411	13	3.3	17	72	25	51	48	13	0	38	1.43
35283286--35283369	44	1.9	44	87	0	123	45	15	7	32	1.73
35283728--35283771	21	2.2	20	83	4	52	63	6	4	25	1.38
35294337--35294376	21	2.0	20	85	9	55	37	7	0	55	1.29
35302529--35302580	27	1.9	27	96	0	95	7	26	5	59	1.48
35304850--35304923	26	2.8	26	83	0	103	40	24	6	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35304847--35304923	13	5.9	13	78	6	84	38	23	6	31	1.80
35306152--35306214	30	2.1	30	94	5	110	57	11	3	28	1.49
35307074--35307098	6	4.2	6	100	0	50	0	16	0	84	0.63
35310371--35310422	20	2.6	21	84	6	63	36	1	1	59	1.19
35317565--35317605	9	4.6	9	100	0	82	36	29	9	24	1.87
35317610--35317767	37	4.3	37	89	2	214	47	13	4	34	1.63
35317649--35317746	17	5.4	17	65	21	56	50	13	3	33	1.57
35321362--35321398	16	2.4	16	90	4	58	29	24	10	35	1.89
35322399--35322511	37	3.1	37	76	0	109	38	23	18	20	1.94
35325025--35325084	21	2.9	21	80	7	61	55	6	3	35	1.43
35325300--35325324	12	2.1	12	100	0	50	16	0	24	60	1.36
35330795--35330838	18	2.4	18	84	0	61	13	11	43	31	1.80
35342057--35342113	21	2.7	21	89	5	80	19	26	17	36	1.94
35343052--35343110	23	2.5	24	78	16	68	59	1	0	38	1.08
35343055--35343112	22	2.5	23	81	10	66	58	1	0	39	1.08
35343058--35343122	22	2.8	22	75	11	60	55	3	1	40	1.25
35344633--35344793	81	2.0	82	96	1	297	40	11	16	31	1.84
35345107--35345301	98	2.0	98	94	0	345	36	24	10	28	1.89
35346347--35346437	19	4.8	19	86	2	139	34	15	12	38	1.84
35346666--35347453	132	6.0	132	90	2	1233	30	25	17	26	1.98
35346683--35347453	265	2.9	263	92	1	1247	29	25	17	27	1.97
35346772--35347375	44	13.7	44	65	13	204	29	25	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35346666--35347453	397	2.0	395	90	2	1231	30	25	17	26	1.98
35348675--35348739	7	8.9	7	79	17	53	4	9	3	83	0.90
35351860--35352036	83	2.1	85	93	5	308	37	12	19	29	1.89
35352350--35352544	98	2.0	98	94	0	345	36	24	10	28	1.89
35353596--35353687	19	4.8	19	91	0	157	35	15	10	38	1.82
35353573--35353687	38	2.9	38	88	5	158	38	14	9	37	1.79
35357296--35357834	70	7.7	70	79	4	543	22	17	27	33	1.96
35357296--35357834	140	3.8	139	81	4	609	22	17	27	33	1.96
35357313--35357837	210	2.5	209	81	2	613	22	16	27	32	1.96
35364264--35364288	9	2.8	9	100	0	50	48	0	32	20	1.50
35381556--35381966	188	2.2	189	90	1	664	32	24	12	30	1.92
35383713--35383738	11	2.4	11	100	0	52	38	0	0	61	0.96
35385295--35385327	17	1.9	17	100	0	66	36	30	12	21	1.90
35393014--35393105	13	7.1	13	80	9	116	36	25	5	32	1.79
35393014--35393105	39	2.4	39	100	0	184	36	25	5	32	1.79
35400018--35400075	19	3.0	19	85	12	66	44	0	10	44	1.38
35402884--35402931	25	1.9	25	86	0	69	39	16	12	31	1.86
35412769--35413688	458	2.0	459	95	0	1653	24	17	26	32	1.96
35415721--35415753	7	4.7	7	92	0	57	84	0	12	3	0.72
35417780--35417827	18	2.7	18	86	0	60	43	29	16	10	1.81
35417779--35417878	34	2.9	35	75	4	103	38	28	19	15	1.91
35423209--35423640	206	2.1	205	85	8	579	31	24	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35424082--35424156	22	3.6	21	67	22	59	18	1	29	50	1.55
35424237--35424297	21	3.0	20	80	7	68	24	0	27	47	1.52
35424426--35424455	15	2.0	15	93	0	51	63	0	3	33	1.11
35424649--35424686	20	1.9	20	94	0	67	34	0	7	57	1.28
35425185--35425229	19	2.4	19	80	0	54	33	37	2	26	1.69
35431075--35431272	43	4.6	42	75	6	173	29	19	25	25	1.98
35434526--35434586	17	3.6	16	80	6	59	34	29	16	19	1.94
35436444--35436591	57	2.5	60	84	9	196	22	25	22	29	1.99
35441818--35441859	21	2.0	22	90	4	68	38	26	4	30	1.77
35443888--35444014	42	3.0	42	79	5	123	31	25	16	25	1.96
35449393--35449451	20	3.0	20	73	12	59	61	3	8	27	1.41
35449640--35449752	20	5.7	20	70	9	79	32	0	1	64	1.10
35449651--35449725	29	2.6	29	82	2	78	33	1	2	62	1.17
35449639--35449780	10	14.7	10	64	17	50	30	1	2	65	1.13
35449639--35449755	19	5.9	20	70	15	66	35	0	1	62	1.11
35449948--35450123	85	2.1	85	83	8	225	34	10	11	43	1.76
35449969--35450135	85	2.0	84	85	4	228	37	10	13	38	1.79
35459589--35459629	19	2.2	19	86	4	57	9	4	7	78	1.10
35459609--35459642	16	2.1	16	88	0	50	23	0	8	67	1.18
35460651--35460719	29	2.4	28	73	7	66	47	5	11	34	1.64
35461049--35461094	24	1.9	24	86	0	65	50	4	0	45	1.21
35461133--35461187	13	4.1	14	79	6	60	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35461136--35461187	27	1.9	27	92	0	86	50	0	0	50	1.00
35468986--35469050	30	2.2	30	86	5	87	26	0	10	63	1.27
35469256--35469305	23	2.2	23	96	0	91	10	24	12	54	1.67
35470372--35470405	15	2.3	15	100	0	68	38	23	14	23	1.92
35477322--35477356	14	2.5	14	90	0	52	45	5	0	48	1.26
35485976--35486088	56	2.0	56	83	8	140	29	18	7	44	1.78
35486090--35486114	10	2.5	10	100	0	50	12	20	8	60	1.57
35496091--35496426	41	8.2	41	82	2	388	19	19	31	30	1.96
35496600--35496648	14	3.5	14	82	0	62	18	0	34	46	1.49
35497060--35497113	22	2.5	21	81	3	63	22	0	29	48	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199