genome.fa.s18.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  147  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48701225--48701275	20	2.5	20	75	12	52	27	0	11	60	1.31
48701338--48701876	268	2.0	268	98	0	1051	47	5	2	44	1.41
48701954--48701990	13	2.8	13	91	0	56	43	29	8	18	1.79
48702762--48702813	25	2.1	25	88	0	77	48	17	7	26	1.74
48704791--48704875	42	2.0	42	100	0	170	25	18	22	32	1.97
48705271--48705374	45	2.5	43	78	10	117	34	5	28	30	1.81
48705500--48705541	15	2.7	16	82	14	52	52	2	0	45	1.13
48705509--48705550	15	2.9	15	82	10	52	52	0	0	47	1.00
48705498--48705708	107	2.0	108	96	0	388	49	6	1	43	1.36
48705603--48705648	16	2.9	16	78	12	51	52	2	0	45	1.13
48705603--48705657	15	3.7	15	79	13	53	52	1	0	45	1.11
48705537--48705706	37	4.7	35	67	20	100	48	7	1	42	1.40
48705501--48705752	107	2.4	107	88	5	343	50	5	1	42	1.35
48717928--48717962	16	2.1	17	89	5	54	65	8	8	17	1.44
48719324--48720310	495	2.0	486	84	7	1266	31	15	22	29	1.95
48727830--48727994	79	2.1	79	91	1	269	48	3	24	23	1.65
48731145--48731225	40	2.0	40	83	7	101	24	22	24	28	1.99
48737103--48737379	88	3.2	88	89	1	439	33	15	15	35	1.89
48737484--48737530	21	2.3	20	92	7	85	34	29	4	31	1.77
48737825--48737889	19	3.3	19	65	23	53	23	16	15	44	1.86
48743334--48743378	20	2.2	20	88	0	63	26	11	31	31	1.91
48747122--48747258	49	2.7	51	77	2	152	32	22	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48751036--48751067	3	10.7	3	100	0	64	65	0	0	34	0.93
48752230--48752272	21	2.0	21	81	0	50	58	6	0	34	1.25
48752368--48752447	35	2.3	35	83	8	94	48	6	0	45	1.27
48755839--48756121	44	6.4	44	77	4	246	31	18	20	30	1.96
48755838--48756222	88	4.4	89	76	2	301	31	18	20	29	1.96
48755838--48756137	89	3.4	89	79	2	291	30	18	22	29	1.97
48755845--48756089	133	1.8	132	82	0	310	30	17	22	30	1.96
48755839--48756140	133	2.3	133	79	2	295	30	18	21	29	1.97
48756607--48756636	15	2.0	15	93	0	51	63	23	13	0	1.29
48757726--48757756	4	7.8	4	92	0	53	22	0	3	74	0.96
48759422--48760607	394	3.0	393	95	0	2102	38	13	21	25	1.91
48761817--48761845	2	14.5	2	100	0	58	51	48	0	0	1.00
48768339--48768382	22	2.0	23	86	4	63	31	0	2	65	1.05
48768323--48768378	20	2.8	20	72	17	55	33	0	1	64	1.04
48768325--48768382	14	4.4	14	72	10	59	32	0	1	65	1.03
48770263--48770298	14	2.7	13	91	8	63	55	0	0	44	0.99
48770391--48770426	8	4.2	8	89	10	54	36	2	0	61	1.11
48770412--48770451	13	3.0	13	92	3	62	30	2	2	65	1.19
48776514--48776553	21	2.0	20	85	5	53	47	20	5	27	1.70
48776689--48776730	21	2.0	20	86	4	57	66	11	0	21	1.23
48778553--48778603	23	2.2	23	82	3	57	60	9	11	17	1.57
48782633--48782677	22	2.2	20	84	15	56	15	11	2	71	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48790538--48790566	13	2.2	13	100	0	58	27	34	6	31	1.83
48791980--48792044	16	4.1	16	91	0	103	40	6	32	21	1.78
48792397--48792431	18	2.0	17	88	5	52	54	0	0	45	0.99
48792258--48792526	120	2.2	119	96	2	486	48	5	1	43	1.38
48792609--48792641	17	1.9	17	100	0	66	57	0	0	42	0.98
48804934--48804965	6	5.2	6	92	7	55	65	0	18	15	1.27
48804934--48804964	13	2.5	13	94	5	55	64	0	19	16	1.29
48806843--48806883	18	2.3	18	91	8	66	12	24	46	17	1.82
48808171--48808219	25	2.0	25	83	0	62	34	12	18	34	1.88
48814276--48814311	18	2.1	18	89	5	56	11	25	44	19	1.83
48815723--48815765	20	2.2	19	84	12	52	11	18	16	53	1.72
48823440--48823472	13	2.5	13	95	0	57	30	15	18	36	1.91
48825726--48825750	5	5.0	5	100	0	50	80	0	20	0	0.72
48826315--48827049	370	2.0	370	97	0	1398	27	17	17	37	1.92
48827034--48827078	9	5.1	9	89	2	56	60	2	4	33	1.29
48827326--48827358	15	2.1	16	88	5	50	36	0	6	57	1.23
48834007--48834105	16	6.1	17	72	15	68	73	0	23	3	0.97
48834007--48834087	17	4.9	17	74	17	53	74	0	22	3	0.98
48834016--48834116	25	4.2	23	74	18	82	74	0	21	3	0.98
48834051--48834116	16	4.3	15	83	11	80	74	0	22	3	0.96
48834062--48834102	7	5.6	7	83	11	55	73	0	26	0	0.84
48834052--48834122	30	2.3	31	87	4	108	71	0	25	2	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48839972--48840005	17	2.0	17	88	11	52	52	0	17	29	1.45
48844075--48844107	13	2.4	14	90	10	59	24	0	21	54	1.45
48849090--48849114	12	2.1	12	100	0	50	16	8	8	68	1.38
48850491--48850540	18	2.8	18	81	0	55	44	34	2	20	1.63
48864109--48864152	22	2.0	21	82	8	52	36	2	9	52	1.46
48867448--48867488	17	2.4	17	84	11	57	34	0	17	48	1.47
48872772--48872819	21	2.2	22	88	3	71	20	0	39	39	1.53
48874857--48874916	22	2.8	21	70	22	52	58	6	3	31	1.40
48877424--48877513	43	2.1	44	89	2	137	46	5	3	44	1.43
48880388--48880425	19	2.0	20	85	15	53	39	10	13	36	1.79
48891312--48893037	861	2.0	862	99	0	3427	41	21	13	23	1.89
48904519--48904657	70	2.0	70	91	0	224	30	23	12	33	1.91
48904964--48905070	40	2.6	39	76	8	99	35	21	22	20	1.96
48905110--48905260	41	3.7	41	80	5	164	19	18	31	30	1.96
48905112--48905270	82	2.0	81	83	6	205	21	18	30	29	1.97
48905613--48905662	22	2.3	21	79	3	55	26	2	36	36	1.68
48905631--48905703	35	2.1	35	84	0	92	17	1	39	41	1.58
48906252--48906663	206	2.0	206	95	0	736	49	4	8	37	1.53
48908061--48908139	39	2.0	39	87	0	113	31	10	22	35	1.88
48908688--48908727	20	2.0	20	100	0	80	25	0	10	65	1.24
48910271--48910373	43	2.4	43	88	0	143	28	16	29	26	1.97
48913837--48913903	19	3.5	19	80	15	84	37	1	4	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48921389--48921496	21	5.1	21	65	0	63	18	20	17	43	1.88
48921378--48921526	42	3.5	42	81	1	165	18	24	17	40	1.91
48921384--48921546	84	1.9	84	80	2	184	17	23	18	40	1.91
48928100--48928138	14	2.8	14	96	0	69	12	46	20	20	1.83
48929227--48929369	60	2.4	60	80	0	151	26	20	18	34	1.95
48929227--48929440	20	10.8	20	67	6	94	24	19	20	35	1.96
48931349--48931489	39	3.7	37	76	11	135	17	29	21	31	1.96
48931325--48931493	76	2.2	76	84	4	214	20	29	20	29	1.98
48937058--48937166	50	2.2	50	81	0	137	29	22	27	20	1.98
48937439--48937477	12	3.2	12	85	0	51	51	5	23	20	1.67
48940687--48940816	49	2.7	50	84	8	178	26	22	29	21	1.99
48945235--48945313	27	2.9	27	77	3	79	41	25	13	18	1.88
48949462--48949676	32	6.7	32	81	1	216	37	21	20	20	1.95
48949469--48949679	64	3.3	64	80	4	255	37	22	19	19	1.94
48949469--48949676	96	2.2	96	84	1	274	37	22	19	19	1.94
48949849--48949904	24	2.3	23	82	8	76	44	28	8	17	1.79
48949961--48950101	53	2.6	53	82	6	176	26	16	19	36	1.93
48950089--48950155	26	2.5	27	87	2	91	19	13	23	43	1.86
48949961--48950237	27	10.3	27	79	6	161	24	17	19	38	1.92
48952857--48952904	20	2.4	20	79	6	53	35	16	8	39	1.79
48952820--48952947	60	2.1	60	81	2	141	28	17	17	37	1.92
48952812--48953006	100	2.0	100	81	2	230	26	18	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48959982--48960161	80	2.3	80	83	10	210	27	27	20	23	1.99
48959979--48960161	40	4.6	40	81	8	187	28	27	20	24	1.99
48962994--48963138	37	3.8	37	79	9	132	29	29	19	21	1.97
48962972--48963139	37	4.5	36	76	12	128	29	29	19	22	1.98
48970568--48970674	40	2.7	40	84	5	119	25	27	20	27	1.99
48970574--48970794	80	2.8	80	79	7	193	27	27	20	25	1.99
48970614--48970794	80	2.3	80	83	9	219	27	27	20	23	1.99
48970611--48970794	40	4.6	40	81	7	196	28	27	20	23	1.99
49005081--49005136	29	1.9	29	96	0	103	28	23	25	23	1.99
49005109--49005293	50	3.7	50	78	3	160	28	23	27	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199