genome.fa.s18.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  191  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60705060--60705102	22	2.0	22	85	0	59	46	2	11	39	1.53
60706992--60707111	60	2.0	60	93	0	204	36	13	8	41	1.74
60710557--60710597	20	2.0	20	90	0	64	39	9	19	31	1.84
60714949--60715075	29	4.1	29	72	20	123	53	9	7	29	1.61
60717452--60717569	26	4.5	26	72	7	112	42	0	2	55	1.13
60717480--60717532	23	2.4	22	81	12	63	35	0	5	58	1.22
60717477--60717541	17	3.6	17	75	18	60	40	0	4	55	1.21
60717508--60717912	117	3.5	117	95	0	729	41	1	3	52	1.30
60717625--60717658	17	2.0	17	100	0	68	41	0	0	58	0.98
60717625--60717672	15	3.0	15	81	9	51	41	2	0	56	1.11
60717742--60717775	17	2.0	17	100	0	68	41	0	0	58	0.98
60717859--60717892	17	2.0	17	100	0	68	41	0	0	58	0.98
60717859--60717906	15	3.0	15	81	9	51	41	2	0	56	1.11
60718040--60718144	44	2.5	41	78	18	133	36	30	3	29	1.75
60718056--60718146	46	2.0	46	93	4	159	38	30	4	26	1.76
60718126--60718194	16	4.3	16	94	0	120	21	33	5	39	1.77
60718475--60718519	21	2.1	21	84	8	56	42	2	0	55	1.12
60724130--60724166	20	2.0	19	85	15	51	37	10	0	51	1.37
60727583--60727625	22	2.0	22	85	0	59	46	2	11	39	1.53
60729518--60729637	60	2.0	60	93	0	204	35	13	8	43	1.74
60732802--60732865	27	2.3	27	79	12	69	9	29	1	59	1.38
60733046--60733095	24	2.1	23	85	10	66	76	2	8	14	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60733046--60733095	23	2.1	24	85	3	66	76	2	8	14	1.10
60733602--60733674	27	2.7	27	93	0	128	20	34	24	20	1.97
60733749--60733785	10	3.6	10	88	3	56	70	0	29	0	0.88
60741821--60741874	23	2.3	24	76	20	60	64	3	1	29	1.21
60748741--60748775	15	2.4	15	90	4	54	48	0	8	42	1.33
60749924--60750034	19	5.8	19	89	0	168	40	9	12	37	1.75
60749931--60750034	38	2.7	38	96	0	190	41	8	11	38	1.72
60749924--60750060	19	6.9	21	85	4	105	39	8	13	38	1.75
60751809--60751874	29	2.3	28	77	12	71	34	0	4	60	1.17
60751867--60751925	23	2.8	20	73	16	55	33	3	10	52	1.52
60756622--60756692	6	11.8	6	81	0	70	25	50	0	23	1.49
60756623--60756702	12	6.7	12	85	5	99	25	50	1	23	1.57
60756722--60756771	15	3.3	15	74	0	55	26	26	18	30	1.98
60757249--60757288	6	6.7	6	97	0	53	7	50	25	17	1.72
60757249--60757288	12	3.3	12	92	0	62	7	50	25	17	1.72
60761520--60761579	27	2.3	27	82	8	70	61	1	3	33	1.22
60761544--60761616	9	8.0	9	79	8	76	65	1	1	31	1.09
60765265--60765541	46	6.0	46	91	2	432	35	10	25	28	1.90
60767879--60767905	13	2.1	13	100	0	54	37	22	7	33	1.82
60769519--60769561	21	2.0	22	86	13	63	69	4	0	25	1.07
60769694--60769732	9	4.2	9	84	15	53	66	0	0	33	0.92
60780262--60780295	17	2.1	17	88	5	52	67	0	2	29	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60780765--60780961	105	1.9	105	93	2	342	32	16	15	35	1.90
60782751--60782802	20	2.6	20	100	0	104	28	32	15	23	1.95
60783486--60783519	3	11.3	3	87	0	50	35	32	0	32	1.58
60786709--60786739	15	2.1	15	100	0	62	61	12	6	19	1.53
60793825--60793877	27	2.0	27	88	0	79	37	18	11	32	1.87
60803698--60803745	21	2.3	21	92	0	78	52	12	16	18	1.75
60806324--60807907	228	6.9	228	87	2	1553	29	21	26	22	1.99
60809138--60809285	39	4.0	36	80	12	117	33	2	0	64	1.08
60809172--60809203	16	2.0	16	100	0	64	31	0	0	68	0.90
60809159--60809278	39	3.0	40	84	7	154	35	2	0	61	1.09
60809140--60809204	29	2.4	28	82	10	80	29	3	0	67	1.05
60809136--60809285	67	2.2	69	85	8	198	34	2	0	63	1.09
60809219--60809285	32	2.2	30	83	5	80	37	2	0	59	1.13
60813155--60814717	228	6.9	227	83	2	1319	30	22	25	22	1.99
60813155--60814660	456	3.3	456	82	2	1601	30	22	25	22	1.99
60813249--60814750	684	2.2	684	80	2	1638	29	22	25	22	1.99
60820977--60821020	18	2.4	19	84	3	54	59	0	0	40	0.98
60821553--60821593	22	1.9	22	90	5	66	63	0	0	36	0.95
60821778--60821803	12	2.2	12	100	0	52	7	15	30	46	1.74
60821792--60821919	40	3.2	39	75	11	118	36	21	21	21	1.95
60821978--60822265	41	7.0	41	82	4	321	22	20	27	29	1.99
60823212--60823242	14	2.1	15	94	5	55	19	0	45	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60824038--60824077	17	2.4	17	91	0	62	50	15	20	15	1.79
60826087--60826673	23	25.7	23	76	11	483	30	6	23	39	1.80
60826122--60826650	137	3.9	137	87	4	579	30	6	23	39	1.81
60826078--60826485	160	2.5	160	97	0	771	30	6	23	39	1.81
60826078--60826668	160	3.7	159	87	5	766	30	6	23	39	1.80
60826278--60826647	137	2.7	135	94	1	598	29	7	23	40	1.81
60827279--60827498	43	5.1	43	90	2	325	18	18	32	30	1.95
60832068--60832106	5	7.8	5	97	0	51	0	10	61	28	1.28
60835894--60835932	2	20.0	2	94	5	71	51	0	0	48	1.00
60837973--60838013	3	13.7	3	89	0	64	31	2	2	63	1.20
60848982--60849053	9	7.9	9	79	13	58	30	11	18	40	1.85
60848987--60849053	18	3.7	18	78	7	73	31	10	17	40	1.84
60848987--60849053	27	2.5	27	79	13	75	31	10	17	40	1.84
60862676--60862707	14	2.3	14	94	0	55	21	18	6	53	1.67
60863026--60863183	54	2.9	54	88	0	253	27	15	31	25	1.96
60869842--60869909	24	2.8	23	78	12	66	26	1	11	60	1.40
60873360--60873393	17	1.9	18	88	5	52	23	0	8	67	1.18
60880228--60880254	12	2.2	12	100	0	54	77	0	7	14	0.97
60881039--60881107	30	2.3	31	84	2	86	33	7	23	36	1.82
60881876--60881928	7	7.6	7	73	0	52	43	13	3	39	1.62
60885073--60885119	21	2.2	22	92	3	78	21	19	38	21	1.94
60888282--60888328	21	2.2	22	92	3	78	21	19	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60890247--60890325	38	2.1	38	97	0	149	34	24	6	35	1.81
60890389--60890438	24	2.1	24	88	7	75	20	20	10	50	1.76
60892481--60892527	24	2.0	24	84	12	62	36	6	0	57	1.24
60894146--60894192	24	2.0	24	83	8	60	31	34	0	34	1.58
60895516--60895583	29	2.3	30	92	5	111	44	22	7	26	1.79
60895721--60895809	35	2.5	36	80	5	101	40	26	14	17	1.89
60901775--60901813	16	2.4	17	82	8	53	48	5	0	46	1.24
60903193--60903278	44	2.0	42	82	8	102	22	17	12	47	1.81
60909267--60909294	3	9.3	3	100	0	56	32	32	0	35	1.58
60918248--60918291	16	2.6	17	85	3	54	65	2	2	29	1.16
60918654--60918685	5	6.4	5	96	0	55	78	0	3	18	0.89
60918948--60919015	3	22.7	3	87	0	100	36	26	1	35	1.66
60919014--60919040	3	9.0	3	100	0	54	66	0	0	33	0.92
60931211--60931275	21	3.2	20	82	8	78	56	3	6	33	1.39
60933579--60933610	13	2.4	14	94	5	57	31	28	0	40	1.57
60934160--60934192	17	1.9	18	88	11	52	42	9	0	48	1.35
60934620--60934665	20	2.2	21	85	11	60	71	0	0	28	0.86
60936430--60936673	125	2.0	125	99	0	479	39	25	11	23	1.88
60944175--60944199	7	3.6	7	100	0	50	44	0	12	44	1.41
60944562--60944613	16	2.8	19	72	19	56	44	0	5	50	1.26
60946779--60946821	21	2.0	21	100	0	86	30	4	18	46	1.69
60961918--60961954	19	2.0	19	89	5	58	29	5	0	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60963290--60963385	27	3.5	27	77	9	86	28	20	14	36	1.92
60963405--60963468	27	2.3	27	81	7	67	20	14	15	50	1.78
60967945--60967998	26	2.1	26	82	6	65	12	16	25	44	1.84
60971521--60971694	87	2.0	87	93	0	294	48	5	24	21	1.72
60971516--60971695	41	4.3	41	86	6	243	48	5	23	22	1.71
60971672--60971729	24	2.3	26	80	16	70	55	5	24	15	1.61
60974694--60974952	29	8.9	29	80	2	241	36	12	27	23	1.91
60974694--60974951	87	3.0	86	82	5	311	36	12	27	23	1.91
60984173--60984227	28	2.0	28	82	7	67	29	0	3	67	1.08
60988620--60988672	18	2.8	17	79	20	61	22	3	1	71	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199