genome.fa.s18.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  46  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18277500--18277621	64	1.9	64	96	0	226	22	22	17	37	1.94
18279428--18279467	20	2.0	20	85	4	55	50	5	2	42	1.37
18294821--18294845	7	3.6	7	100	0	50	56	16	0	28	1.41
18295723--18295749	13	2.1	13	100	0	54	29	18	22	29	1.97
18302345--18302409	22	3.0	22	83	0	94	18	18	18	44	1.87
18302999--18303023	13	1.9	13	100	0	50	8	0	24	68	1.16
18304693--18304794	41	2.5	41	87	3	134	28	18	25	27	1.98
18308912--18308952	22	1.9	21	90	5	64	26	9	36	26	1.88
18311890--18311915	2	13.0	2	100	0	52	50	0	0	50	1.00
18326573--18326608	3	12.0	3	87	0	54	30	2	0	66	1.06
18326851--18326884	16	2.1	16	88	0	50	38	2	14	44	1.61
18329285--18329329	21	2.0	23	83	8	58	20	17	48	13	1.80
18329285--18329336	21	2.5	22	79	14	56	17	17	51	13	1.76
18329892--18329950	30	2.0	30	86	0	82	54	8	8	28	1.60
18329917--18329963	18	2.6	18	86	3	58	55	2	4	38	1.31
18337887--18338284	50	7.7	50	88	5	526	26	23	30	20	1.98
18337887--18338284	106	3.8	100	87	6	535	26	23	30	20	1.98
18337887--18338284	156	2.6	156	91	2	628	26	23	30	20	1.98
18339107--18339202	40	2.3	40	89	3	147	63	8	28	0	1.23
18343108--18343148	11	3.6	11	86	3	55	21	31	2	43	1.66
18343263--18343305	22	2.0	22	81	9	52	30	2	2	65	1.18
18344618--18344662	20	2.2	20	84	7	56	17	2	6	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18369733--18369759	12	2.2	12	100	0	54	59	11	7	22	1.56
18369845--18369884	21	1.9	21	100	0	80	55	5	25	15	1.60
18371992--18372095	49	2.1	48	85	7	138	30	8	9	50	1.65
18373333--18373473	26	5.5	26	67	24	86	43	0	3	51	1.23
18373333--18373542	102	2.1	98	94	3	366	42	1	4	50	1.32
18373517--18373633	55	2.2	52	78	15	123	42	2	1	52	1.25
18373714--18373815	44	2.4	43	78	14	113	36	30	3	29	1.76
18373727--18373819	44	2.1	46	87	4	136	36	30	4	29	1.77
18374737--18374782	21	2.2	21	84	3	67	19	2	8	69	1.25
18376883--18376975	25	3.7	25	72	7	80	32	21	23	22	1.98
18377213--18377274	24	2.7	23	78	11	56	41	1	0	56	1.09
18377411--18377460	25	2.0	25	92	0	82	28	22	34	16	1.95
18391614--18391679	13	5.1	13	74	7	71	42	24	1	31	1.64
18391614--18391687	13	5.8	13	73	7	53	41	24	1	32	1.63
18407710--18407754	23	2.0	23	95	0	81	40	20	8	31	1.83
18407711--18407760	23	2.2	23	88	0	73	42	20	10	28	1.84
18409568--18409661	46	2.0	46	93	0	161	30	27	7	34	1.84
18412998--18413049	25	2.1	25	85	3	70	34	17	28	19	1.94
18415385--18415422	17	2.2	17	90	0	58	60	2	0	36	1.11
18420663--18420734	20	4.1	18	73	23	73	34	1	0	63	1.03
18420686--18420728	9	4.6	9	77	11	50	27	0	0	72	0.85
18420665--18420728	31	2.1	29	91	5	101	29	1	0	68	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18420692--18420741	21	2.4	21	93	3	84	38	0	0	62	0.96
18420692--18420756	20	3.0	21	86	8	69	38	0	3	58	1.14
18421449--18421486	7	5.4	7	100	0	76	60	0	13	26	1.33
18423962--18424010	26	1.9	26	91	4	82	34	10	24	30	1.89
18430365--18430415	25	2.1	25	82	7	61	37	11	1	49	1.51
18446697--18446736	22	1.9	20	89	5	53	57	2	2	37	1.26
18451056--18451090	17	2.0	18	88	5	54	65	0	0	34	0.93
18454834--18454890	19	3.2	18	72	22	57	38	1	3	56	1.27
18455004--18455056	21	2.5	21	90	0	79	30	37	9	22	1.86
18466543--18466624	43	1.9	43	84	0	110	37	15	8	37	1.79
18470263--18470300	15	2.5	15	100	0	76	13	21	26	39	1.89
18471839--18472106	36	6.5	46	77	19	215	36	11	21	29	1.89
18471839--18472027	82	2.3	82	93	0	315	37	11	22	29	1.89
18474622--18474762	42	3.3	42	81	1	147	43	18	21	16	1.88
18478385--18478410	11	2.4	11	100	0	52	50	7	42	0	1.31
18479071--18479114	3	15.0	3	85	4	63	34	0	2	63	1.07
18483527--18483580	21	2.4	22	81	9	65	44	5	3	46	1.44
18483986--18484451	126	3.7	126	93	0	761	30	14	21	33	1.93
18485648--18485672	7	3.6	7	100	0	50	60	12	0	28	1.32
18486752--18486814	29	2.2	29	88	0	90	65	0	0	34	0.93
18486860--18486910	22	2.3	22	100	0	102	39	0	33	27	1.57
18489588--18489627	20	2.0	20	86	13	57	77	5	7	10	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18495939--18495963	7	3.6	7	100	0	50	44	0	16	40	1.47
18502352--18502504	45	3.5	45	87	5	213	14	6	54	24	1.64
18502370--18502504	42	3.1	42	92	3	207	13	5	54	25	1.61
18502352--18502555	87	2.3	87	83	3	232	14	7	53	24	1.66
18502608--18502642	6	5.8	6	90	10	54	14	2	68	14	1.32
18510507--18510625	57	2.1	58	93	1	204	28	5	15	50	1.67
18517066--18517090	6	4.2	6	100	0	50	32	16	0	52	1.44
18519227--18519278	27	1.9	27	96	0	95	28	32	25	13	1.93
18519195--18519458	102	2.5	104	90	5	410	30	30	20	18	1.96
18521680--18521728	20	2.4	21	83	10	57	34	0	10	55	1.34
18529258--18529324	24	2.8	24	72	20	59	17	31	19	31	1.95
18529482--18529529	25	2.0	24	84	8	62	27	25	6	41	1.79
18530111--18530205	49	2.0	47	84	14	122	20	26	15	37	1.92
18538836--18539191	177	2.0	177	100	0	712	26	11	21	41	1.86
18544294--18544421	21	6.1	21	85	3	152	17	22	15	44	1.86
18544294--18544421	42	3.0	42	90	2	195	17	22	15	44	1.86
18544294--18544421	63	2.0	63	84	3	168	17	22	15	44	1.86
18571687--18571863	46	3.8	46	88	3	284	38	9	23	28	1.85
18573584--18573684	47	2.2	47	82	8	118	24	3	8	62	1.42
18621764--18621855	21	4.5	21	74	8	73	43	16	19	20	1.88
18621854--18621970	21	5.6	21	75	11	87	44	15	18	21	1.86
18624811--18624846	17	2.2	16	90	5	54	11	5	13	69	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18634436--18634571	73	1.9	71	92	3	227	54	11	11	22	1.68
18637316--18637411	30	3.2	31	75	8	90	47	6	2	43	1.40
18650380--18650408	14	2.1	14	100	0	58	27	0	6	65	1.18
18659008--18659040	16	2.1	16	88	5	50	63	12	0	24	1.28
18662060--18662115	14	4.3	13	77	22	64	78	7	8	5	1.08
18662058--18662118	26	2.4	26	89	8	90	77	8	9	4	1.13
18662925--18663120	108	1.8	108	89	2	313	25	18	10	45	1.80
18663598--18663856	44	6.0	44	78	4	242	25	16	28	29	1.97
18663600--18663865	132	2.0	129	92	2	442	27	15	27	29	1.96
18663877--18664157	100	2.8	100	87	2	388	29	22	23	24	1.99
18663887--18664119	50	4.7	50	65	4	130	30	20	25	23	1.99
18664224--18664584	44	8.3	44	65	13	127	31	19	23	25	1.98
18664250--18664587	173	1.9	175	89	3	520	30	20	23	25	1.98
18664425--18664854	130	3.3	131	82	5	499	28	19	24	27	1.99
18664817--18664938	40	2.9	41	79	8	140	34	22	20	22	1.97
18664822--18664947	44	3.0	42	73	15	125	32	21	22	23	1.98
18664906--18665328	130	3.3	130	94	0	720	28	20	25	26	1.99
18664999--18665194	44	4.5	44	65	10	123	30	18	23	26	1.98
18667373--18667405	16	2.1	16	88	5	50	63	12	0	24	1.28
18684558--18684584	14	1.9	14	100	0	54	14	7	0	77	0.97
18684588--18684695	51	2.1	51	81	8	121	30	19	5	44	1.73
18687623--18687661	21	1.9	21	89	5	62	41	7	10	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18687623--18687669	21	2.3	21	85	3	60	40	6	8	44	1.60
18700044--18700971	231	4.0	231	99	0	1820	28	17	12	41	1.86
18704443--18704467	12	2.1	12	100	0	50	24	36	24	16	1.94
18704631--18704699	27	2.6	27	85	0	84	46	15	5	31	1.70
18704632--18704691	9	6.7	9	76	0	57	45	16	6	31	1.74
18704641--18704700	18	3.4	17	84	9	75	46	15	5	33	1.67
18704805--18704858	18	3.0	18	86	0	63	22	0	38	38	1.54
18712940--18712977	18	2.1	19	90	5	60	52	5	21	21	1.66
18720924--18721000	39	2.0	40	82	12	97	32	23	3	40	1.73
18723912--18723962	24	2.1	24	96	0	93	23	27	3	45	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199